Zfp788 (zinc finger protein 788) - Rat Genome Database

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Gene: Zfp788 (zinc finger protein 788) Mus musculus
Analyze
No known orthologs.
Symbol: Zfp788
Name: zinc finger protein 788
RGD ID: 1558390
MGI Page MGI
Description: Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; genitourinary system; heart; nervous system; and sensory organ.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810426N06Rik; AI256342; AI605193
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Pseudogenes: Gm18236  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39741,282,955 - 41,300,305 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl741,282,627 - 41,300,954 (+)EnsemblGRCm39 Ensembl
GRCm38741,633,531 - 41,650,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl741,633,203 - 41,651,530 (+)EnsemblGRCm38mm10GRCm38
MGSCv37748,888,901 - 48,906,904 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera738,004,410 - 38,022,252 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp788Mouse1,2-dichloroethane decreases expressionEXP 6480464ethylene dichloride results in decreased expression of ZFP788 mRNACTDPMID:28960355
Zfp788Mouse1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of ZFP788 mRNACTDPMID:22206623
Zfp788Mouse17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of ZFP788 mRNACTDPMID:39298647
Zfp788Mouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression of ZFP788 mRNACTDPMID:25975270
Zfp788Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of ZFP788 mRNACTDPMID:28922406
Zfp788Mouse4,4'-sulfonyldiphenol decreases expressionEXP 6480464bisphenol S results in decreased expression of ZFP788 mRNACTDPMID:33297965 and PMID:39298647
Zfp788Mouseaflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of ZFP788 mRNACTDPMID:19770486
Zfp788Mousebisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of ZFP788 mRNACTDPMID:33221593
Zfp788Mousebisphenol F decreases expressionEXP 6480464bisphenol F results in decreased expression of ZFP788 mRNACTDPMID:38685157
Zfp788Mousecopper(II) sulfate decreases expressionEXP 6480464Copper Sulfate results in decreased expression of ZFP788 mRNACTDPMID:18579281
Zfp788Mousefolic acid decreases expressionEXP 6480464Folic Acid results in decreased expression of ZFP788 mRNACTDPMID:25629700
Zfp788Mousesulforaphane decreases expressionEXP 6480464sulforaphane results in decreased expression of ZFP788 mRNACTDPMID:30529165

1 to 12 of 12 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp788Mouseregulation of transcription by RNA polymerase II involved_inIBAPANTHER:PTN002393781 more ...2290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp788Mousenucleus is_active_inIBAPANTHER:PTN002393781 more ...2290270 GO_CentralGO_REF:0000033


#
Reference Title
Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:9630514   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15188402   PMID:15618518   PMID:16141072  
PMID:16141073   PMID:20059953   PMID:20412781   PMID:21677750   PMID:21873635   PMID:34321999  



.

.
Variants in Zfp788
865 total Variants

Predicted Target Of
Summary Value
Count of predictions:517
Count of miRNA genes:310
Interacting mature miRNAs:335
Transcripts:ENSMUST00000045720, ENSMUST00000098508, ENSMUST00000100275, ENSMUST00000131180, ENSMUST00000140964, ENSMUST00000154942, ENSMUST00000170770
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse

1 to 10 of 46 rows
BB230629  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38741,651,345 - 41,651,485UniSTSGRCm38
MGSCv37748,906,715 - 48,906,855UniSTSGRCm37
Celera738,004,459 - 38,004,599UniSTS
Cytogenetic Map7B3UniSTS
Whitehead/MRC_RH7538.44UniSTS
RH136037  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38741,650,547 - 41,650,760UniSTSGRCm38
MGSCv37748,905,917 - 48,906,130UniSTSGRCm37
Celera738,005,184 - 38,005,397UniSTS
Cytogenetic Map7B3UniSTS
2810426N06Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38741,647,587 - 41,648,878UniSTSGRCm38
MGSCv37748,902,957 - 48,904,248UniSTSGRCm37
Celera738,007,066 - 38,008,357UniSTS
Cytogenetic Map7B3UniSTS
cM Map7 UniSTS
AI605193  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38741,650,636 - 41,650,761UniSTSGRCm38
MGSCv37748,906,006 - 48,906,131UniSTSGRCm37
Celera738,005,183 - 38,005,308UniSTS
Cytogenetic Map7B3UniSTS
Whitehead/MRC_RH7538.75UniSTS






1 to 22 of 22 rows
RefSeq Transcripts NM_001360674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB010346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB010347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC108827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02146637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI605193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD544822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 22 of 22 rows

Ensembl Acc Id: ENSMUST00000045720   ⟹   ENSMUSP00000035499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl741,282,988 - 41,300,355 (+)Ensembl
GRCm38.p6 Ensembl741,633,564 - 41,650,931 (+)Ensembl
Ensembl Acc Id: ENSMUST00000098508   ⟹   ENSMUSP00000096108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl741,283,001 - 41,300,954 (+)Ensembl
GRCm38.p6 Ensembl741,633,577 - 41,651,530 (+)Ensembl
Ensembl Acc Id: ENSMUST00000100275   ⟹   ENSMUSP00000097847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl741,282,955 - 41,300,302 (+)Ensembl
GRCm38.p6 Ensembl741,633,531 - 41,650,878 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131180   ⟹   ENSMUSP00000114542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl741,282,980 - 41,297,782 (+)Ensembl
GRCm38.p6 Ensembl741,633,556 - 41,648,358 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140964   ⟹   ENSMUSP00000116050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl741,282,982 - 41,298,421 (+)Ensembl
GRCm38.p6 Ensembl741,633,558 - 41,648,997 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154942   ⟹   ENSMUSP00000119819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl741,282,627 - 41,296,972 (+)Ensembl
GRCm38.p6 Ensembl741,633,203 - 41,647,548 (+)Ensembl
Ensembl Acc Id: ENSMUST00000170770   ⟹   ENSMUSP00000132848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl741,297,008 - 41,300,020 (+)Ensembl
GRCm38.p6 Ensembl741,647,584 - 41,650,596 (+)Ensembl
RefSeq Acc Id: NM_001360674   ⟹   NP_001347603
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39741,282,955 - 41,300,305 (+)NCBI
GRCm38741,633,531 - 41,650,881 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360675   ⟹   NP_001347604
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39741,282,955 - 41,300,305 (+)NCBI
GRCm38741,633,531 - 41,650,881 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360677   ⟹   NP_001347606
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39741,282,955 - 41,300,305 (+)NCBI
GRCm38741,633,531 - 41,650,881 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360678   ⟹   NP_001347607
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39741,282,955 - 41,300,305 (+)NCBI
GRCm38741,633,531 - 41,650,881 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360680   ⟹   NP_001347609
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39741,282,955 - 41,300,305 (+)NCBI
GRCm38741,633,531 - 41,650,881 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360681   ⟹   NP_001347610
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39741,282,955 - 41,300,305 (+)NCBI
GRCm38741,633,531 - 41,650,881 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360683   ⟹   NP_001347612
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39741,282,955 - 41,300,305 (+)NCBI
GRCm38741,633,531 - 41,650,881 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360684   ⟹   NP_001347613
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39741,284,214 - 41,300,305 (+)NCBI
GRCm38741,634,790 - 41,650,881 (+)NCBI
Sequence:
RefSeq Acc Id: NM_023363   ⟹   NP_075852
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39741,282,955 - 41,300,305 (+)NCBI
GRCm38741,633,531 - 41,650,881 (+)NCBI
MGSCv37748,888,901 - 48,906,904 (+)RGD
Celera738,004,410 - 38,022,252 (-)RGD
cM Map7 ENTREZGENE
Sequence:
1 to 5 of 16 rows
1 to 5 of 16 rows
RefSeq Acc Id: NP_075852   ⟸   NM_023363
- Peptide Label: isoform d
- UniProtKB: Q8BUQ3 (UniProtKB/TrEMBL),   Q6PIW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347604   ⟸   NM_001360675
- Peptide Label: isoform a
- UniProtKB: E9Q980 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347612   ⟸   NM_001360683
- Peptide Label: isoform d
- UniProtKB: Q6PIW5 (UniProtKB/TrEMBL),   Q8BUQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347606   ⟸   NM_001360677
- Peptide Label: isoform b
RefSeq Acc Id: NP_001347609   ⟸   NM_001360680
- Peptide Label: isoform d
- UniProtKB: Q6PIW5 (UniProtKB/TrEMBL),   Q8BUQ3 (UniProtKB/TrEMBL)
C2H2-type   KRAB

Name Modeler Protein Id AA Range Protein Structure
AF-E9Q980-F1-model_v2 AlphaFold E9Q980 1-884 view protein structure

RGD ID:8663731
Promoter ID:EPDNEW_M9897
Type:initiation region
Name:Zfp788_1
Description:Mus musculus zinc finger protein 788 , transcript variant 6,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38741,633,565 - 41,633,625EPDNEW
RGD ID:6840379
Promoter ID:MM_KWN:50126
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_023363,   OTTMUST00000053677,   OTTMUST00000053678,   UC009GLU.1,   UC009GLV.1,   UC009GLW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36748,888,341 - 48,888,987 (+)MPROMDB


1 to 40 of 63 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000030457
  ENSMUSG00000074165 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000045720 ENTREZGENE
  ENSMUST00000045720.14 UniProtKB/TrEMBL
  ENSMUST00000098508 ENTREZGENE
  ENSMUST00000098508.9 UniProtKB/TrEMBL
  ENSMUST00000100275 ENTREZGENE
  ENSMUST00000100275.10 UniProtKB/TrEMBL
  ENSMUST00000131180.8 UniProtKB/TrEMBL
  ENSMUST00000140964.8 UniProtKB/TrEMBL
  ENSMUST00000154942.2 UniProtKB/TrEMBL
  ENSMUST00000170770 ENTREZGENE
  ENSMUST00000170770.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro C2H2-ZF_domain-containing UniProtKB/TrEMBL
  Ikaros_C2H2-ZF UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Snail/Krueppel_Znf UniProtKB/TrEMBL
  Zinc_finger UniProtKB/TrEMBL
  Znf_C2H2-type UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
MGD MGI:1914857 ENTREZGENE
NCBI Gene 67607 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  PROTEIN ESCARGOT UniProtKB/TrEMBL
  RB-ASSOCIATED KRAB ZINC FINGER-RELATED UniProtKB/TrEMBL
  RIKEN CDNA 6720489N17 GENE-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 154-LIKE UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 200 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 564 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 589 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 936 UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
1 to 40 of 63 rows