ZNF229 (zinc finger protein 229) - Rat Genome Database

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Gene: ZNF229 (zinc finger protein 229) Homo sapiens
Analyze
Symbol: ZNF229
Name: zinc finger protein 229
RGD ID: 1348111
HGNC Page HGNC:13022
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ34222
RGD Orthologs
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,426,254 - 44,448,578 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,417,519 - 44,448,578 (-)EnsemblGRCh38hg38GRCh38
GRCh371944,930,426 - 44,952,766 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,622,266 - 49,644,505 (-)NCBINCBI36Build 36hg18NCBI36
Build 341949,625,534 - 49,644,505NCBI
Celera1941,734,424 - 41,756,654 (-)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1941,362,659 - 41,384,994 (-)NCBIHuRef
CHM1_11944,932,204 - 44,954,528 (-)NCBICHM1_1
T2T-CHM13v2.01947,249,029 - 47,271,368 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12743021   PMID:14702039   PMID:15057824   PMID:16344560   PMID:20694014   PMID:21873635   PMID:29987050   PMID:32296183   PMID:35563538  


Genomics

Comparative Map Data
ZNF229
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,426,254 - 44,448,578 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,417,519 - 44,448,578 (-)EnsemblGRCh38hg38GRCh38
GRCh371944,930,426 - 44,952,766 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,622,266 - 49,644,505 (-)NCBINCBI36Build 36hg18NCBI36
Build 341949,625,534 - 49,644,505NCBI
Celera1941,734,424 - 41,756,654 (-)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1941,362,659 - 41,384,994 (-)NCBIHuRef
CHM1_11944,932,204 - 44,954,528 (-)NCBICHM1_1
T2T-CHM13v2.01947,249,029 - 47,271,368 (-)NCBIT2T-CHM13v2.0
ZNF229
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,585,472 - 50,612,814 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,462,602 - 52,484,875 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,379,100 - 41,401,448 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11949,984,158 - 50,006,482 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1949,984,158 - 50,006,462 (-)Ensemblpanpan1.1panPan2
ZNF229
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,868,369 - 110,888,458 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,868,009 - 110,886,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,348,994 - 110,369,079 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01111,430,969 - 111,451,065 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,438,164 - 111,450,676 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11111,072,415 - 111,092,504 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,704,886 - 110,724,950 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,574,407 - 111,594,483 (+)NCBIUU_Cfam_GSD_1.0
ZNF229
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1637,876,143 - 37,899,795 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl637,876,877 - 37,893,327 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607317,424,692 - 17,472,507 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in ZNF229
51 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_014518.3(ZNF229):c.2132C>T (p.Pro711Leu) single nucleotide variant Malignant melanoma [RCV000072204] Chr19:44428649 [GRCh38]
Chr19:44932824 [GRCh37]
Chr19:49624664 [NCBI36]
Chr19:19q13.31		 not provided
NM_014518.3(ZNF229):c.1947C>T (p.Val649=) single nucleotide variant Malignant melanoma [RCV000063570] Chr19:44428834 [GRCh38]
Chr19:44933009 [GRCh37]
Chr19:49624849 [NCBI36]
Chr19:19q13.31		 not provided
NM_014518.3(ZNF229):c.277G>A (p.Glu93Lys) single nucleotide variant Malignant melanoma [RCV000063571] Chr19:44430504 [GRCh38]
Chr19:44934679 [GRCh37]
Chr19:49626519 [NCBI36]
Chr19:19q13.31		 not provided
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3 copy number gain See cases [RCV000133888] Chr19:11227942..44626354 [GRCh38]
Chr19:11338618..45129651 [GRCh37]
Chr19:11199618..49821491 [NCBI36]
Chr19:19p13.2-q13.31		 pathogenic
GRCh37/hg19 19q13.2-13.32(chr19:43013365-47241534)x1 copy number loss See cases [RCV000240182] Chr19:43013365..47241534 [GRCh37]
Chr19:19q13.2-13.32		 pathogenic
GRCh37/hg19 19q13.31(chr19:44466919-45029206)x1 copy number loss Breast ductal adenocarcinoma [RCV000207290] Chr19:44466919..45029206 [GRCh37]
Chr19:19q13.31		 uncertain significance
chr19:44501518-45322744 complex variant complex Breast ductal adenocarcinoma [RCV000207162] Chr19:44501518..45322744 [GRCh37]
Chr19:19q13.31-13.32		 uncertain significance
GRCh37/hg19 19q13.31-13.32(chr19:44300416-45639540)x1 copy number loss See cases [RCV000512107] Chr19:44300416..45639540 [GRCh37]
Chr19:19q13.31-13.32		 uncertain significance
NM_014518.4(ZNF229):c.1849A>G (p.Ile617Val) single nucleotide variant Inborn genetic diseases [RCV003300830] Chr19:44428932 [GRCh38]
Chr19:44933107 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.446C>T (p.Pro149Leu) single nucleotide variant Inborn genetic diseases [RCV003289858] Chr19:44430335 [GRCh38]
Chr19:44934510 [GRCh37]
Chr19:19q13.31		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain See cases [RCV000512296] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain See cases [RCV000511289] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic|uncertain significance
NM_014518.4(ZNF229):c.1895A>C (p.Glu632Ala) single nucleotide variant not provided [RCV000658842] Chr19:44428886 [GRCh38]
Chr19:44933061 [GRCh37]
Chr19:19q13.31		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19q13.31(chr19:44858873-44934653)x1 copy number loss not provided [RCV000740183] Chr19:44858873..44934653 [GRCh37]
Chr19:19q13.31		 benign
GRCh37/hg19 19q13.31(chr19:44896740-44938688)x1 copy number loss not provided [RCV000740184] Chr19:44896740..44938688 [GRCh37]
Chr19:19q13.31		 benign
GRCh37/hg19 19q13.31(chr19:44901526-44935485)x1 copy number loss not provided [RCV000740185] Chr19:44901526..44935485 [GRCh37]
Chr19:19q13.31		 benign
GRCh37/hg19 19q13.31-13.42(chr19:44738088-53621561)x3 copy number gain not provided [RCV001007050] Chr19:44738088..53621561 [GRCh37]
Chr19:19q13.31-13.42		 pathogenic
NM_014518.4(ZNF229):c.457A>C (p.Ile153Leu) single nucleotide variant Inborn genetic diseases [RCV003269745] Chr19:44430324 [GRCh38]
Chr19:44934499 [GRCh37]
Chr19:19q13.31		 uncertain significance
GRCh37/hg19 19q11-13.33(chr19:28271106-49213832)x3 copy number gain not provided [RCV000845733] Chr19:28271106..49213832 [GRCh37]
Chr19:19q11-13.33		 pathogenic
NM_014518.4(ZNF229):c.2179C>T (p.Leu727Phe) single nucleotide variant Inborn genetic diseases [RCV003249372] Chr19:44428602 [GRCh38]
Chr19:44932777 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.454C>A (p.Pro152Thr) single nucleotide variant Inborn genetic diseases [RCV003274731] Chr19:44430327 [GRCh38]
Chr19:44934502 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2098C>A (p.Arg700Ser) single nucleotide variant Inborn genetic diseases [RCV003276517] Chr19:44428683 [GRCh38]
Chr19:44932858 [GRCh37]
Chr19:19q13.31		 uncertain significance
NC_000019.9:g.(?_44011002)_(45213778_?)dup duplication Ethylmalonic encephalopathy [RCV003116731] Chr19:44011002..45213778 [GRCh37]
Chr19:19q13.31-13.32		 uncertain significance
NM_014518.4(ZNF229):c.1838C>T (p.Ser613Phe) single nucleotide variant Inborn genetic diseases [RCV003257516] Chr19:44428943 [GRCh38]
Chr19:44933118 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2098C>T (p.Arg700Cys) single nucleotide variant Inborn genetic diseases [RCV002969788] Chr19:44428683 [GRCh38]
Chr19:44932858 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2390C>T (p.Thr797Met) single nucleotide variant Inborn genetic diseases [RCV002753821] Chr19:44428391 [GRCh38]
Chr19:44932566 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2461G>A (p.Glu821Lys) single nucleotide variant Inborn genetic diseases [RCV002734688] Chr19:44428320 [GRCh38]
Chr19:44932495 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2393G>A (p.Cys798Tyr) single nucleotide variant Inborn genetic diseases [RCV002864986] Chr19:44428388 [GRCh38]
Chr19:44932563 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1774A>G (p.Arg592Gly) single nucleotide variant Inborn genetic diseases [RCV002688007] Chr19:44429007 [GRCh38]
Chr19:44933182 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2252A>G (p.Gln751Arg) single nucleotide variant Inborn genetic diseases [RCV002951999] Chr19:44428529 [GRCh38]
Chr19:44932704 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2458G>T (p.Gly820Cys) single nucleotide variant Inborn genetic diseases [RCV002708383] Chr19:44428323 [GRCh38]
Chr19:44932498 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1963C>T (p.Pro655Ser) single nucleotide variant Inborn genetic diseases [RCV002949773] Chr19:44428818 [GRCh38]
Chr19:44932993 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1390G>T (p.Gly464Cys) single nucleotide variant Inborn genetic diseases [RCV002704092] Chr19:44429391 [GRCh38]
Chr19:44933566 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1050A>T (p.Arg350Ser) single nucleotide variant Inborn genetic diseases [RCV002804693] Chr19:44429731 [GRCh38]
Chr19:44933906 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1801G>A (p.Val601Met) single nucleotide variant Inborn genetic diseases [RCV002767853] Chr19:44428980 [GRCh38]
Chr19:44933155 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1489G>A (p.Gly497Ser) single nucleotide variant Inborn genetic diseases [RCV002764478] Chr19:44429292 [GRCh38]
Chr19:44933467 [GRCh37]
Chr19:19q13.31		 likely benign
NM_014518.4(ZNF229):c.1747C>T (p.Arg583Trp) single nucleotide variant Inborn genetic diseases [RCV002874466] Chr19:44429034 [GRCh38]
Chr19:44933209 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1055A>T (p.Asp352Val) single nucleotide variant Inborn genetic diseases [RCV002987007] Chr19:44429726 [GRCh38]
Chr19:44933901 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2372C>A (p.Thr791Asn) single nucleotide variant Inborn genetic diseases [RCV002984095] Chr19:44428409 [GRCh38]
Chr19:44932584 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1561G>A (p.Val521Met) single nucleotide variant Inborn genetic diseases [RCV003006660] Chr19:44429220 [GRCh38]
Chr19:44933395 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1043C>T (p.Pro348Leu) single nucleotide variant Inborn genetic diseases [RCV002743213] Chr19:44429738 [GRCh38]
Chr19:44933913 [GRCh37]
Chr19:19q13.31		 likely benign
NM_014518.4(ZNF229):c.204G>C (p.Arg68Ser) single nucleotide variant Inborn genetic diseases [RCV002873228] Chr19:44432256 [GRCh38]
Chr19:44936431 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1601T>C (p.Met534Thr) single nucleotide variant Inborn genetic diseases [RCV002664938] Chr19:44429180 [GRCh38]
Chr19:44933355 [GRCh37]
Chr19:19q13.31		 likely benign
NM_014518.4(ZNF229):c.344A>T (p.Glu115Val) single nucleotide variant Inborn genetic diseases [RCV002813406] Chr19:44430437 [GRCh38]
Chr19:44934612 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2057G>T (p.Cys686Phe) single nucleotide variant Inborn genetic diseases [RCV002831658] Chr19:44428724 [GRCh38]
Chr19:44932899 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2396G>A (p.Gly799Asp) single nucleotide variant Inborn genetic diseases [RCV002897632] Chr19:44428385 [GRCh38]
Chr19:44932560 [GRCh37]
Chr19:19q13.31		 likely benign
NM_014518.4(ZNF229):c.966G>C (p.Lys322Asn) single nucleotide variant Inborn genetic diseases [RCV002714147] Chr19:44429815 [GRCh38]
Chr19:44933990 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1672G>A (p.Asp558Asn) single nucleotide variant Inborn genetic diseases [RCV002722498] Chr19:44429109 [GRCh38]
Chr19:44933284 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1085C>T (p.Ser362Leu) single nucleotide variant Inborn genetic diseases [RCV003173465] Chr19:44429696 [GRCh38]
Chr19:44933871 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.830A>T (p.Asp277Val) single nucleotide variant Inborn genetic diseases [RCV003201598] Chr19:44429951 [GRCh38]
Chr19:44934126 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.115G>A (p.Val39Met) single nucleotide variant Inborn genetic diseases [RCV003174321] Chr19:44432345 [GRCh38]
Chr19:44936520 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.644G>A (p.Cys215Tyr) single nucleotide variant Inborn genetic diseases [RCV003208704] Chr19:44430137 [GRCh38]
Chr19:44934312 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2383C>T (p.Pro795Ser) single nucleotide variant Inborn genetic diseases [RCV003186307] Chr19:44428398 [GRCh38]
Chr19:44932573 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1153G>T (p.Ala385Ser) single nucleotide variant Inborn genetic diseases [RCV003386706] Chr19:44429628 [GRCh38]
Chr19:44933803 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.2036C>T (p.Thr679Met) single nucleotide variant Inborn genetic diseases [RCV003351495] Chr19:44428745 [GRCh38]
Chr19:44932920 [GRCh37]
Chr19:19q13.31		 uncertain significance
NM_014518.4(ZNF229):c.1443G>T (p.Lys481Asn) single nucleotide variant not provided [RCV003457036] Chr19:44429338 [GRCh38]
Chr19:44933513 [GRCh37]
Chr19:19q13.31		 likely benign
NM_014518.4(ZNF229):c.1744C>T (p.Arg582Trp) single nucleotide variant not provided [RCV003407028] Chr19:44429037 [GRCh38]
Chr19:44933212 [GRCh37]
Chr19:19q13.31		 likely benign
NM_014518.4(ZNF229):c.2T>C (p.Met1Thr) single nucleotide variant not provided [RCV003425251] Chr19:44442846 [GRCh38]
Chr19:44947030 [GRCh37]
Chr19:19q13.31		 likely benign
NM_014518.4(ZNF229):c.2347C>T (p.Leu783Phe) single nucleotide variant Inborn genetic diseases [RCV003253987] Chr19:44428434 [GRCh38]
Chr19:44932609 [GRCh37]
Chr19:19q13.31		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3302
Count of miRNA genes:1030
Interacting mature miRNAs:1215
Transcripts:ENST00000291187, ENST00000588931, ENST00000591289, ENST00000591604, ENST00000592308
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-36805  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371944,930,457 - 44,930,584UniSTSGRCh37
Build 361949,622,297 - 49,622,424RGDNCBI36
Celera1941,734,455 - 41,734,582RGD
Cytogenetic Map19q13.31UniSTS
HuRef1941,362,690 - 41,362,817UniSTS
Stanford-G3 RH Map192263.0UniSTS
NCBI RH Map19445.7UniSTS
GeneMap99-G3 RH Map192274.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 8 7 16 7 15 8 13 20 47 26 54 99
Low 2113 2133 1308 264 701 109 3514 1680 3528 142 1171 1308 159 1137 2191 3
Below cutoff 146 763 157 160 837 155 752 484 78 6 9 27 5 67 597 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001278510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_014518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_103551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006723372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011527292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047439385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054322050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054322051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054322052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC084239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC138473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC245748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF192979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY166791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM663713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA856295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT585105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000591289
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,417,519 - 44,448,472 (-)Ensembl
RefSeq Acc Id: ENST00000592308   ⟹   ENSP00000464902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,432,339 - 44,448,461 (-)Ensembl
RefSeq Acc Id: ENST00000613197   ⟹   ENSP00000479807
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,426,251 - 44,448,578 (-)Ensembl
RefSeq Acc Id: ENST00000614049   ⟹   ENSP00000479884
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,426,254 - 44,448,472 (-)Ensembl
RefSeq Acc Id: ENST00000620012   ⟹   ENSP00000483138
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,426,255 - 44,448,446 (-)Ensembl
RefSeq Acc Id: NM_001278510   ⟹   NP_001265439
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,426,254 - 44,448,578 (-)NCBI
GRCh371944,930,423 - 44,952,766 (-)NCBI
HuRef1941,362,659 - 41,384,994 (-)NCBI
CHM1_11944,932,201 - 44,954,528 (-)NCBI
T2T-CHM13v2.01947,249,029 - 47,271,368 (-)NCBI
Sequence:
RefSeq Acc Id: NM_014518   ⟹   NP_055333
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,426,254 - 44,448,472 (-)NCBI
GRCh371944,930,423 - 44,952,766 (-)NCBI
Build 361949,622,266 - 49,644,505 (-)NCBI Archive
Celera1941,734,424 - 41,756,654 (-)RGD
HuRef1941,362,659 - 41,384,994 (-)NCBI
CHM1_11944,932,201 - 44,954,427 (-)NCBI
T2T-CHM13v2.01947,249,029 - 47,271,262 (-)NCBI
Sequence:
RefSeq Acc Id: NR_103551
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,426,254 - 44,448,472 (-)NCBI
GRCh371944,930,423 - 44,952,766 (-)NCBI
HuRef1941,362,659 - 41,384,994 (-)NCBI
CHM1_11944,932,201 - 44,954,427 (-)NCBI
T2T-CHM13v2.01947,249,029 - 47,271,262 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006723372   ⟹   XP_006723435
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,426,254 - 44,442,846 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011527292   ⟹   XP_011525594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,426,254 - 44,448,472 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047439385   ⟹   XP_047295341
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,426,254 - 44,448,472 (-)NCBI
RefSeq Acc Id: XM_054322050   ⟹   XP_054178025
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01947,249,029 - 47,271,262 (-)NCBI
RefSeq Acc Id: XM_054322051   ⟹   XP_054178026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01947,249,029 - 47,271,262 (-)NCBI
RefSeq Acc Id: XM_054322052   ⟹   XP_054178027
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01947,249,029 - 47,265,632 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_055333   ⟸   NM_014518
- Peptide Label: isoform 1
- UniProtKB: Q59FV2 (UniProtKB/Swiss-Prot),   B2RWN3 (UniProtKB/Swiss-Prot),   Q86WL9 (UniProtKB/Swiss-Prot),   Q9UJW7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001265439   ⟸   NM_001278510
- Peptide Label: isoform 2
- UniProtKB: A0A087WVZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006723435   ⟸   XM_006723372
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011525594   ⟸   XM_011527292
- Peptide Label: isoform X2
- UniProtKB: A0A087WVZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000483138   ⟸   ENST00000620012
RefSeq Acc Id: ENSP00000479807   ⟸   ENST00000613197
RefSeq Acc Id: ENSP00000479884   ⟸   ENST00000614049
RefSeq Acc Id: ENSP00000464902   ⟸   ENST00000592308
RefSeq Acc Id: XP_047295341   ⟸   XM_047439385
- Peptide Label: isoform X1
- UniProtKB: Q9UJW7 (UniProtKB/Swiss-Prot),   Q59FV2 (UniProtKB/Swiss-Prot),   B2RWN3 (UniProtKB/Swiss-Prot),   Q86WL9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054178026   ⟸   XM_054322051
- Peptide Label: isoform X2
- UniProtKB: A0A087WVZ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054178025   ⟸   XM_054322050
- Peptide Label: isoform X1
- UniProtKB: Q9UJW7 (UniProtKB/Swiss-Prot),   Q59FV2 (UniProtKB/Swiss-Prot),   B2RWN3 (UniProtKB/Swiss-Prot),   Q86WL9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054178027   ⟸   XM_054322052
- Peptide Label: isoform X3
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9UJW7-F1-model_v2 AlphaFold Q9UJW7 1-825 view protein structure

Promoters
RGD ID:7240317
Promoter ID:EPDNEW_H25904
Type:initiation region
Name:ZNF229_1
Description:zinc finger protein 229
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H25905  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,448,467 - 44,448,527EPDNEW
RGD ID:7240319
Promoter ID:EPDNEW_H25905
Type:initiation region
Name:ZNF229_2
Description:zinc finger protein 229
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H25904  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,448,472 - 44,448,532EPDNEW
RGD ID:6796278
Promoter ID:HG_KWN:30216
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   Lymphoblastoid
Transcripts:NM_014518,   UC010EJK.1,   UC010EJL.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361949,644,251 - 49,644,751 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:13022 AgrOrtholog
COSMIC ZNF229 COSMIC
Ensembl Genes ENSG00000278318 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000592308.1 UniProtKB/TrEMBL
  ENST00000613197 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000613197.4 UniProtKB/Swiss-Prot
  ENST00000614049 ENTREZGENE
  ENST00000614049.5 UniProtKB/Swiss-Prot
  ENST00000620012 ENTREZGENE
  ENST00000620012.4 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000278318 GTEx
HGNC ID HGNC:13022 ENTREZGENE
Human Proteome Map ZNF229 Human Proteome Map
InterPro KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7772 UniProtKB/Swiss-Prot
NCBI Gene 7772 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 235-LIKE UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN 879 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37601 PharmGKB
PROSITE KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WVZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A087X068_HUMAN UniProtKB/TrEMBL
  B2RWN3 ENTREZGENE
  K7EIU9_HUMAN UniProtKB/TrEMBL
  L8ECE8_HUMAN UniProtKB/TrEMBL
  Q59FV2 ENTREZGENE
  Q86WL9 ENTREZGENE
  Q9UJW7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B2RWN3 UniProtKB/Swiss-Prot
  Q59FV2 UniProtKB/Swiss-Prot
  Q86WL9 UniProtKB/Swiss-Prot