ZNF221 (zinc finger protein 221) - Rat Genome Database

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Pathways
Gene: ZNF221 (zinc finger protein 221) Homo sapiens
Analyze
Symbol: ZNF221
Name: zinc finger protein 221
RGD ID: 1347890
HGNC Page HGNC:13014
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC138186; MGC141986
RGD Orthologs
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381943,951,228 - 43,981,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1943,951,204 - 43,972,739 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371944,455,380 - 44,471,861 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,147,237 - 49,163,592 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341949,147,236 - 49,163,701NCBI
Celera1941,258,930 - 41,275,263 (+)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1940,887,651 - 40,903,984 (+)NCBIHuRef
CHM1_11944,457,327 - 44,473,678 (+)NCBICHM1_1
T2T-CHM13v2.01946,774,167 - 46,793,142 (+)NCBIT2T-CHM13v2.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
acrylamide  (EXP)
butanal  (EXP)
CGP 52608  (EXP)
leflunomide  (EXP)
silicon dioxide  (EXP)
urethane  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10449920   PMID:12477932   PMID:12743021   PMID:15057824   PMID:15342556   PMID:15489334   PMID:16344560   PMID:21873635   PMID:28514442   PMID:29507755   PMID:30804502   PMID:32296183  
PMID:32393512   PMID:33961781   PMID:40593736  


Genomics

Comparative Map Data
ZNF221
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381943,951,228 - 43,981,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1943,951,204 - 43,972,739 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371944,455,380 - 44,471,861 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,147,237 - 49,163,592 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341949,147,236 - 49,163,701NCBI
Celera1941,258,930 - 41,275,263 (+)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1940,887,651 - 40,903,984 (+)NCBIHuRef
CHM1_11944,457,327 - 44,473,678 (+)NCBICHM1_1
T2T-CHM13v2.01946,774,167 - 46,793,142 (+)NCBIT2T-CHM13v2.0
ZNF221
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,113,340 - 50,141,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11951,985,726 - 52,014,280 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01940,900,192 - 40,916,949 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11949,511,048 - 49,526,958 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1949,522,225 - 49,526,848 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
ZNF221
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1613,900,831 - 13,920,220 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366607316,996,300 - 17,009,001 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1637,451,374 - 37,459,679 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl637,455,895 - 37,458,991 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM

Variants

.
Variants in ZNF221
63 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_013359.2(ZNF221):c.1318C>T (p.His440Tyr) single nucleotide variant Malignant melanoma [RCV000072195] Chr19:43966820 [GRCh38]
Chr19:44470972 [GRCh37]
Chr19:49162812 [NCBI36]
Chr19:19q13.31
not provided
NM_013359.2(ZNF221):c.1498C>T (p.His500Tyr) single nucleotide variant Malignant melanoma [RCV000063563] Chr19:43967000 [GRCh38]
Chr19:44471152 [GRCh37]
Chr19:49162992 [NCBI36]
Chr19:19q13.31
not provided
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3 copy number gain Developmental delay AND/OR other significant developmental or morphological phenotypes [RCV000133888] Chr19:19p13.2-q13.31 pathogenic
GRCh37/hg19 19q13.31(chr19:44466919-45029206)x1 copy number loss Breast ductal adenocarcinoma [RCV000207290] Chr19:44466919..45029206 [GRCh37]
Chr19:19q13.31
uncertain significance
GRCh37/hg19 19q13.31-13.32(chr19:44300416-45639540)x1 copy number loss See cases [RCV000512107] Chr19:19q13.31-13.32 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain Ventricular septal defect [RCV000511289] Chr19:19p13.3-q13.43 pathogenic|uncertain significance
NM_001297588.2(ZNF221):c.358T>C (p.Trp120Arg) single nucleotide variant not specified [RCV004294698] Chr19:43965860 [GRCh38]
Chr19:44470012 [GRCh37]
Chr19:19q13.31
uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain Abnormality of the ear [RCV000512296] Chr19:19p13.3-q13.43 pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
Single allele duplication Schizophrenia [RCV000754211] Chr19:19q13.2-13.31 likely pathogenic
GRCh37/hg19 19q13.31(chr19:44470177-44513250)x3 copy number gain not provided [RCV000740181] Chr19:44470177..44513250 [GRCh37]
Chr19:19q13.31
benign
GRCh37/hg19 19q13.31(chr19:44470331-44513250)x3 copy number gain not provided [RCV000740182] Chr19:44470331..44513250 [GRCh37]
Chr19:19q13.31
benign
GRCh37/hg19 19q11-13.33(chr19:28271106-49213832)x3 copy number gain not provided [RCV000845733] Chr19:19q11-13.33 pathogenic
NM_001297588.2(ZNF221):c.-2-150G>A single nucleotide variant Ovarian serous cystadenocarcinoma [RCV006141037] Chr19:43962575 [GRCh38]
Chr19:44466727 [GRCh37]
Chr19:19q13.31
evidence_only
NM_001297588.2(ZNF221):c.1105G>A (p.Glu369Lys) single nucleotide variant not specified [RCV005512665] Chr19:43966607 [GRCh38]
Chr19:44470759 [GRCh37]
Chr19:19q13.31
uncertain significance
GRCh37/hg19 19q13.2-13.32(chr19:43013365-47241534)x1 copy number loss Delayed gross motor development [RCV000240182] Chr19:19q13.2-13.32 pathogenic
NM_001297588.2(ZNF221):c.710A>G (p.Gln237Arg) single nucleotide variant not specified [RCV005306792] Chr19:43966212 [GRCh38]
Chr19:44470364 [GRCh37]
Chr19:19q13.31
uncertain significance
NC_000019.9:g.(?_44011002)_(45213778_?)dup duplication Ethylmalonic encephalopathy [RCV003116731] Chr19:19q13.31-13.32 uncertain significance
NM_001297588.2(ZNF221):c.182A>G (p.Glu61Gly) single nucleotide variant not specified [RCV004204103] Chr19:43965050 [GRCh38]
Chr19:44469202 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1418C>T (p.Thr473Met) single nucleotide variant not specified [RCV004194312] Chr19:43966920 [GRCh38]
Chr19:44471072 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.958C>T (p.Arg320Cys) single nucleotide variant not specified [RCV004205212] Chr19:43966460 [GRCh38]
Chr19:44470612 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1429C>A (p.Pro477Thr) single nucleotide variant not specified [RCV004108604] Chr19:43966931 [GRCh38]
Chr19:44471083 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1643A>G (p.Asn548Ser) single nucleotide variant not specified [RCV004192765] Chr19:43967145 [GRCh38]
Chr19:44471297 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.722T>G (p.Leu241Arg) single nucleotide variant not specified [RCV004207972] Chr19:43966224 [GRCh38]
Chr19:44470376 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.159G>T (p.Lys53Asn) single nucleotide variant not specified [RCV004139407] Chr19:43965027 [GRCh38]
Chr19:44469179 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.623G>C (p.Cys208Ser) single nucleotide variant not specified [RCV004211847] Chr19:43966125 [GRCh38]
Chr19:44470277 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1310G>A (p.Arg437Gln) single nucleotide variant not specified [RCV004233964] Chr19:43966812 [GRCh38]
Chr19:44470964 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.641A>G (p.His214Arg) single nucleotide variant not specified [RCV004080035] Chr19:43966143 [GRCh38]
Chr19:44470295 [GRCh37]
Chr19:19q13.31
likely benign
NM_001297588.2(ZNF221):c.743A>C (p.His248Pro) single nucleotide variant not specified [RCV004180781] Chr19:43966245 [GRCh38]
Chr19:44470397 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1504G>A (p.Gly502Arg) single nucleotide variant not provided [RCV004235573] Chr19:43967006 [GRCh38]
Chr19:44471158 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.446A>G (p.Glu149Gly) single nucleotide variant not specified [RCV004197863] Chr19:43965948 [GRCh38]
Chr19:44470100 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1507G>C (p.Glu503Gln) single nucleotide variant not specified [RCV005523435] Chr19:43967009 [GRCh38]
Chr19:44471161 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.898C>T (p.His300Tyr) single nucleotide variant not specified [RCV005512664] Chr19:43966400 [GRCh38]
Chr19:44470552 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1571A>G (p.His524Arg) single nucleotide variant not specified [RCV006349701] Chr19:43967073 [GRCh38]
Chr19:44471225 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.407C>T (p.Ser136Phe) single nucleotide variant not specified [RCV006349704] Chr19:43965909 [GRCh38]
Chr19:44470061 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1687A>T (p.Asn563Tyr) single nucleotide variant not specified [RCV006349706] Chr19:43967189 [GRCh38]
Chr19:44471341 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.224A>T (p.His75Leu) single nucleotide variant not specified [RCV006349708] Chr19:43965248 [GRCh38]
Chr19:44469400 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.592C>G (p.His198Asp) single nucleotide variant not specified [RCV006349711] Chr19:43966094 [GRCh38]
Chr19:44470246 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1834T>C (p.Cys612Arg) single nucleotide variant not specified [RCV004323229] Chr19:43967336 [GRCh38]
Chr19:44471488 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1042C>G (p.Arg348Gly) single nucleotide variant not specified [RCV004268727] Chr19:43966544 [GRCh38]
Chr19:44470696 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1623G>C (p.Lys541Asn) single nucleotide variant not specified [RCV004281029] Chr19:43967125 [GRCh38]
Chr19:44471277 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.701A>G (p.Glu234Gly) single nucleotide variant not specified [RCV005512663] Chr19:43966203 [GRCh38]
Chr19:44470355 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.623G>A (p.Cys208Tyr) single nucleotide variant not specified [RCV004274992] Chr19:43966125 [GRCh38]
Chr19:44470277 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1180T>C (p.Tyr394His) single nucleotide variant not specified [RCV004253367] Chr19:43966682 [GRCh38]
Chr19:44470834 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.787T>C (p.Phe263Leu) single nucleotide variant not specified [RCV004302715] Chr19:43966289 [GRCh38]
Chr19:44470441 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.130C>G (p.Leu44Val) single nucleotide variant not specified [RCV005512661] Chr19:43964998 [GRCh38]
Chr19:44469150 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.821A>G (p.Lys274Arg) single nucleotide variant Adrenocortical carcinoma, hereditary [RCV006141042] Chr19:43966323 [GRCh38]
Chr19:44470475 [GRCh37]
Chr19:19q13.31
evidence_only
NM_001297588.2(ZNF221):c.491A>G (p.His164Arg) single nucleotide variant not specified [RCV005523433] Chr19:43965993 [GRCh38]
Chr19:44470145 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1195T>G (p.Cys399Gly) single nucleotide variant not specified [RCV006349709] Chr19:43966697 [GRCh38]
Chr19:44470849 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1631A>T (p.Asn544Ile) single nucleotide variant not specified [RCV006349712] Chr19:43967133 [GRCh38]
Chr19:44471285 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.757C>T (p.Pro253Ser) single nucleotide variant not specified [RCV006349703] Chr19:43966259 [GRCh38]
Chr19:44470411 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.965G>A (p.Arg322Lys) single nucleotide variant not specified [RCV006349702] Chr19:43966467 [GRCh38]
Chr19:44470619 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1484A>G (p.Lys495Arg) single nucleotide variant not specified [RCV006349705] Chr19:43966986 [GRCh38]
Chr19:44471138 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.699G>T (p.Lys233Asn) single nucleotide variant not specified [RCV006349710] Chr19:43966201 [GRCh38]
Chr19:44470353 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.971G>A (p.Arg324Lys) single nucleotide variant not specified [RCV006349713] Chr19:43966473 [GRCh38]
Chr19:44470625 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.820A>G (p.Lys274Glu) single nucleotide variant not specified [RCV004344427] Chr19:43966322 [GRCh38]
Chr19:44470474 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.878A>G (p.His293Arg) single nucleotide variant not specified [RCV006349707] Chr19:43966380 [GRCh38]
Chr19:44470532 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.467T>C (p.Ile156Thr) single nucleotide variant not specified [RCV005512659] Chr19:43965969 [GRCh38]
Chr19:44470121 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1102T>C (p.Cys368Arg) single nucleotide variant not specified [RCV005523434] Chr19:43966604 [GRCh38]
Chr19:44470756 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.737G>T (p.Arg246Ile) single nucleotide variant not specified [RCV004353424] Chr19:43966239 [GRCh38]
Chr19:44470391 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.106G>T (p.Ala36Ser) single nucleotide variant not specified [RCV004337310] Chr19:43964974 [GRCh38]
Chr19:44469126 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1072A>G (p.Met358Val) single nucleotide variant not specified [RCV004491820] Chr19:43966574 [GRCh38]
Chr19:44470726 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1181A>G (p.Tyr394Cys) single nucleotide variant not specified [RCV004491821] Chr19:43966683 [GRCh38]
Chr19:44470835 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.240C>A (p.His80Gln) single nucleotide variant not specified [RCV004491824] Chr19:43965264 [GRCh38]
Chr19:44469416 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.586A>G (p.Lys196Glu) single nucleotide variant not specified [RCV004491827] Chr19:43966088 [GRCh38]
Chr19:44470240 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.914C>A (p.Thr305Asn) single nucleotide variant not specified [RCV004491828] Chr19:43966416 [GRCh38]
Chr19:44470568 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.959G>A (p.Arg320His) single nucleotide variant not specified [RCV004491830] Chr19:43966461 [GRCh38]
Chr19:44470613 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.278C>A (p.Thr93Lys) single nucleotide variant not specified [RCV004491825] Chr19:43965302 [GRCh38]
Chr19:44469454 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1469C>T (p.Ala490Val) single nucleotide variant not specified [RCV004491822] Chr19:43966971 [GRCh38]
Chr19:44471123 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1625G>T (p.Gly542Val) single nucleotide variant not specified [RCV004491823] Chr19:43967127 [GRCh38]
Chr19:44471279 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.454G>A (p.Val152Ile) single nucleotide variant not specified [RCV004491826] Chr19:43965956 [GRCh38]
Chr19:44470108 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.940A>C (p.Ile314Leu) single nucleotide variant not specified [RCV004491829] Chr19:43966442 [GRCh38]
Chr19:44470594 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.822A>T (p.Lys274Asn) single nucleotide variant not specified [RCV004688176] Chr19:43966324 [GRCh38]
Chr19:44470476 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.628A>G (p.Ser210Gly) single nucleotide variant not specified [RCV004688175] Chr19:43966130 [GRCh38]
Chr19:44470282 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.79A>C (p.Lys27Gln) single nucleotide variant not specified [RCV004688181] Chr19:43962805 [GRCh38]
Chr19:44466957 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.343G>A (p.Gly115Arg) single nucleotide variant not specified [RCV004688177] Chr19:43965845 [GRCh38]
Chr19:44469997 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1079A>G (p.His360Arg) single nucleotide variant not specified [RCV004688179] Chr19:43966581 [GRCh38]
Chr19:44470733 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1690T>C (p.Cys564Arg) single nucleotide variant not specified [RCV004688180] Chr19:43967192 [GRCh38]
Chr19:44471344 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.663G>A (p.Met221Ile) single nucleotide variant not specified [RCV004688178] Chr19:43966165 [GRCh38]
Chr19:44470317 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.877C>T (p.His293Tyr) single nucleotide variant not specified [RCV004890896] Chr19:43966379 [GRCh38]
Chr19:44470531 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.418A>G (p.Ile140Val) single nucleotide variant not specified [RCV004890897] Chr19:43965920 [GRCh38]
Chr19:44470072 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1433A>G (p.Tyr478Cys) single nucleotide variant not specified [RCV004890898] Chr19:43966935 [GRCh38]
Chr19:44471087 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1019G>A (p.Cys340Tyr) single nucleotide variant not specified [RCV004890899] Chr19:43966521 [GRCh38]
Chr19:44470673 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1463G>T (p.Gly488Val) single nucleotide variant not specified [RCV004890900] Chr19:43966965 [GRCh38]
Chr19:44471117 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.976A>C (p.Asn326His) single nucleotide variant not specified [RCV004890901] Chr19:43966478 [GRCh38]
Chr19:44470630 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1421G>A (p.Gly474Asp) single nucleotide variant not specified [RCV004890902] Chr19:43966923 [GRCh38]
Chr19:44471075 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.739G>C (p.Val247Leu) single nucleotide variant not specified [RCV004890903] Chr19:43966241 [GRCh38]
Chr19:44470393 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.544G>T (p.Val182Phe) single nucleotide variant not specified [RCV004890904] Chr19:43966046 [GRCh38]
Chr19:44470198 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1807A>G (p.Thr603Ala) single nucleotide variant not specified [RCV004890891] Chr19:43967309 [GRCh38]
Chr19:44471461 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.190A>G (p.Arg64Gly) single nucleotide variant not specified [RCV004890892] Chr19:43965058 [GRCh38]
Chr19:44469210 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.226C>A (p.Gln76Lys) single nucleotide variant not specified [RCV004890893] Chr19:43965250 [GRCh38]
Chr19:44469402 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.539G>A (p.Ser180Asn) single nucleotide variant not specified [RCV004890895] Chr19:43966041 [GRCh38]
Chr19:44470193 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1043G>A (p.Arg348His) single nucleotide variant not specified [RCV005306791] Chr19:43966545 [GRCh38]
Chr19:44470697 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1553G>A (p.Ser518Asn) single nucleotide variant not specified [RCV005306790] Chr19:43967055 [GRCh38]
Chr19:44471207 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.40T>C (p.Cys14Arg) single nucleotide variant not specified [RCV005306793] Chr19:43962766 [GRCh38]
Chr19:44466918 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1710C>G (p.Ser570Arg) single nucleotide variant not specified [RCV005302800] Chr19:43967212 [GRCh38]
Chr19:44471364 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.405G>C (p.Arg135Ser) single nucleotide variant not specified [RCV005302801] Chr19:43965907 [GRCh38]
Chr19:44470059 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.268A>G (p.Met90Val) single nucleotide variant not specified [RCV005302802] Chr19:43965292 [GRCh38]
Chr19:44469444 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.419T>C (p.Ile140Thr) single nucleotide variant not specified [RCV005512660] Chr19:43965921 [GRCh38]
Chr19:44470073 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.382C>A (p.Gln128Lys) single nucleotide variant not specified [RCV005523432] Chr19:43965884 [GRCh38]
Chr19:44470036 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1673G>A (p.Gly558Glu) single nucleotide variant not specified [RCV005785242] Chr19:43967175 [GRCh38]
Chr19:44471327 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.765A>T (p.Lys255Asn) single nucleotide variant not specified [RCV005785244] Chr19:43966267 [GRCh38]
Chr19:44470419 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.244T>G (p.Leu82Val) single nucleotide variant not specified [RCV005785245] Chr19:43965268 [GRCh38]
Chr19:44469420 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.688G>A (p.Val230Met) single nucleotide variant not specified [RCV005785248] Chr19:43966190 [GRCh38]
Chr19:44470342 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1283G>C (p.Gly428Ala) single nucleotide variant not specified [RCV005785250] Chr19:43966785 [GRCh38]
Chr19:44470937 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.995A>G (p.His332Arg) single nucleotide variant not specified [RCV005785243] Chr19:43966497 [GRCh38]
Chr19:44470649 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.144C>A (p.Asp48Glu) single nucleotide variant not specified [RCV005785253] Chr19:43965012 [GRCh38]
Chr19:44469164 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1289G>A (p.Gly430Glu) single nucleotide variant not specified [RCV005785247] Chr19:43966791 [GRCh38]
Chr19:44470943 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1662G>T (p.Arg554Ser) single nucleotide variant not specified [RCV005785241] Chr19:43967164 [GRCh38]
Chr19:44471316 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1661G>A (p.Arg554Lys) single nucleotide variant not specified [RCV005785246] Chr19:43967163 [GRCh38]
Chr19:44471315 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.905G>T (p.Arg302Ile) single nucleotide variant not specified [RCV005785240] Chr19:43966407 [GRCh38]
Chr19:44470559 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1420G>A (p.Gly474Ser) single nucleotide variant not specified [RCV005779098] Chr19:43966922 [GRCh38]
Chr19:44471074 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.193A>G (p.Asn65Asp) single nucleotide variant not specified [RCV005785251] Chr19:43965061 [GRCh38]
Chr19:44469213 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.481T>C (p.Ser161Pro) single nucleotide variant not specified [RCV005779099] Chr19:43965983 [GRCh38]
Chr19:44470135 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.662T>C (p.Met221Thr) single nucleotide variant not specified [RCV005785254] Chr19:43966164 [GRCh38]
Chr19:44470316 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001297588.2(ZNF221):c.1679G>A (p.Arg560Gln) single nucleotide variant not specified [RCV005785249] Chr19:43967181 [GRCh38]
Chr19:44471333 [GRCh37]
Chr19:19q13.31
uncertain significance
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:708
Count of miRNA genes:374
Interacting mature miRNAs:396
Transcripts:ENST00000251269, ENST00000587682, ENST00000591168, ENST00000592350
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
645190754GWAS3089234_Hcerebral atherosclerosis QTL GWAS3089234 (human)0.000009cerebral atherosclerosis194395252043952521Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2435 2785 2252 4972 1720 2344 6 618 1828 459 2269 7164 6346 53 3733 1 848 1742 1616 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001297588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001297589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047439352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007066976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC035150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF187987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC143659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP337374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA493401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000251269   ⟹   ENSP00000251269
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1943,951,204 - 43,967,709 (+)Ensembl
Ensembl Acc Id: ENST00000587682   ⟹   ENSP00000467367
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1943,951,228 - 43,967,709 (+)Ensembl
Ensembl Acc Id: ENST00000591168   ⟹   ENSP00000464885
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1943,951,223 - 43,965,893 (+)Ensembl
Ensembl Acc Id: ENST00000592350   ⟹   ENSP00000467446
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1943,960,276 - 43,967,600 (+)Ensembl
Ensembl Acc Id: ENST00000622072   ⟹   ENSP00000477876
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1943,962,723 - 43,967,600 (+)Ensembl
Ensembl Acc Id: ENST00000886290   ⟹   ENSP00000556349
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1943,951,204 - 43,967,386 (+)Ensembl
Ensembl Acc Id: ENST00001121653   ⟹   ENSP00000791458
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1943,951,204 - 43,972,739 (+)Ensembl
Ensembl Acc Id: ENST00001143350   ⟹   ENSP00000814373
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1943,951,204 - 43,967,709 (+)Ensembl
RefSeq Acc Id: NM_001297588   ⟹   NP_001284517
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381943,951,228 - 43,967,709 (+)NCBI
CHM1_11944,457,305 - 44,473,678 (+)NCBI
T2T-CHM13v2.01946,774,167 - 46,790,633 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001297589   ⟹   NP_001284518
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381943,951,228 - 43,967,709 (+)NCBI
CHM1_11944,457,305 - 44,473,678 (+)NCBI
T2T-CHM13v2.01946,774,167 - 46,790,633 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013359   ⟹   NP_037491
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381943,951,228 - 43,967,709 (+)NCBI
GRCh371944,455,375 - 44,471,752 (+)NCBI
Build 361949,147,237 - 49,163,592 (+)NCBI Archive
Celera1941,258,930 - 41,275,263 (+)RGD
HuRef1940,887,651 - 40,903,984 (+)RGD
CHM1_11944,457,327 - 44,473,678 (+)NCBI
T2T-CHM13v2.01946,774,167 - 46,790,633 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047439352   ⟹   XP_047295308
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381943,960,376 - 43,967,709 (+)NCBI
RefSeq Acc Id: XM_054321986   ⟹   XP_054177961
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01946,783,304 - 46,790,633 (+)NCBI
RefSeq Acc Id: XR_007066976
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381943,951,228 - 43,981,613 (+)NCBI
RefSeq Acc Id: XR_008485179
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01946,774,167 - 46,793,142 (+)NCBI
RefSeq Acc Id: NP_037491   ⟸   NM_013359
- UniProtKB: Q2M2H2 (UniProtKB/Swiss-Prot),   K7EIT6 (UniProtKB/Swiss-Prot),   B2RAI6 (UniProtKB/Swiss-Prot),   Q9P1U8 (UniProtKB/Swiss-Prot),   Q9UK13 (UniProtKB/Swiss-Prot),   A0A087WT08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001284518   ⟸   NM_001297589
- UniProtKB: Q9UK13 (UniProtKB/Swiss-Prot),   Q2M2H2 (UniProtKB/Swiss-Prot),   K7EIT6 (UniProtKB/Swiss-Prot),   B2RAI6 (UniProtKB/Swiss-Prot),   Q9P1U8 (UniProtKB/Swiss-Prot),   A0A087WT08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001284517   ⟸   NM_001297588
- UniProtKB: Q2M2H2 (UniProtKB/Swiss-Prot),   K7EIT6 (UniProtKB/Swiss-Prot),   B2RAI6 (UniProtKB/Swiss-Prot),   Q9P1U8 (UniProtKB/Swiss-Prot),   Q9UK13 (UniProtKB/Swiss-Prot),   A0A087WT08 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000477876   ⟸   ENST00000622072
Ensembl Acc Id: ENSP00000467367   ⟸   ENST00000587682
Ensembl Acc Id: ENSP00000464885   ⟸   ENST00000591168
Ensembl Acc Id: ENSP00000467446   ⟸   ENST00000592350
Ensembl Acc Id: ENSP00000251269   ⟸   ENST00000251269
RefSeq Acc Id: XP_047295308   ⟸   XM_047439352
- Peptide Label: isoform X1
- UniProtKB: Q9UK13 (UniProtKB/Swiss-Prot),   Q2M2H2 (UniProtKB/Swiss-Prot),   K7EIT6 (UniProtKB/Swiss-Prot),   B2RAI6 (UniProtKB/Swiss-Prot),   A0A087WT08 (UniProtKB/Swiss-Prot),   Q9P1U8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054177961   ⟸   XM_054321986
- Peptide Label: isoform X1
Ensembl Acc Id: ENSP00000556349   ⟸   ENST00000886290
Ensembl Acc Id: ENSP00000814373   ⟸   ENST00001143350
Ensembl Acc Id: ENSP00000791458   ⟸   ENST00001121653
Protein Domains
KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9UK13-F1-model_v2 AlphaFold Q9UK13 1-617 view protein structure

Promoters
RGD ID:7240283
Promoter ID:EPDNEW_H25887
Type:initiation region
Name:ZNF221_1
Description:zinc finger protein 221
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H25886  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381943,951,228 - 43,951,288EPDNEW
RGD ID:6796271
Promoter ID:HG_KWN:30178
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000251269,   UC010EJB.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361949,146,889 - 49,147,389 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:13014 AgrOrtholog
COSMIC ZNF221 COSMIC
Ensembl Genes ENSG00000159905 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000251269 ENTREZGENE
  ENST00000251269.9 UniProtKB/Swiss-Prot
  ENST00000587682 ENTREZGENE
  ENST00000587682.6 UniProtKB/Swiss-Prot
  ENST00000592350.5 UniProtKB/Swiss-Prot
  ENST00000622072.1 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot
GTEx ENSG00000159905 GTEx
HGNC ID HGNC:13014 ENTREZGENE
Human Proteome Map ZNF221 Human Proteome Map
InterPro KRAB UniProtKB/Swiss-Prot
  KRAB_dom_sf UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report hsa:7638 UniProtKB/Swiss-Prot
NCBI Gene 7638 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN 358-RELATED UniProtKB/Swiss-Prot
Pfam KRAB UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
PharmGKB PA37593 PharmGKB
PROSITE KRAB UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART KRAB UniProtKB/Swiss-Prot
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot
  SSF57667 UniProtKB/Swiss-Prot
UniProt A0A087WT08 ENTREZGENE
  A0A5H1ZRS7_HUMAN UniProtKB/TrEMBL
  A0ACI8Q6L6_HUMAN UniProtKB/TrEMBL
  B2RAI6 ENTREZGENE
  K7EIT6 ENTREZGENE
  Q2M2H2 ENTREZGENE
  Q9P1U8 ENTREZGENE
  Q9UK13 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A087WT08 UniProtKB/Swiss-Prot
  B2RAI6 UniProtKB/Swiss-Prot
  K7EIT6 UniProtKB/Swiss-Prot
  Q2M2H2 UniProtKB/Swiss-Prot
  Q9P1U8 UniProtKB/Swiss-Prot