Zfp1007 (zinc finger protein 1007) - Rat Genome Database

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Gene: Zfp1007 (zinc finger protein 1007) Mus musculus
Analyze
No known orthologs.
Symbol: Zfp1007
Name: zinc finger protein 1007
RGD ID: 1611242
MGI Page MGI
Description: Predicted to enable DNA binding activity; DNA-binding transcription repressor activity, RNA polymerase II-specific; and protein-macromolecule adaptor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human ZNF611 (zinc finger protein 611).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5430403G16Rik; ENSMUSG00000072763; RIKEN cDNA 5430403G16; uncharacterized protein LOC77200
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395109,822,409 - 109,838,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5109,822,411 - 109,838,907 (-)EnsemblGRCm39 Ensembl
GRCm385109,674,543 - 109,690,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5109,674,545 - 109,691,041 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5FNCBI
cM Map553.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp1007Mouseregulation of transcription by RNA polymerase II involved_inIBAPANTHER:PTN001225435 more ...2290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp1007Mousenucleoplasm located_inISOUniProtKB:O948922290270 GO_CentralGO_REF:0000119
Zfp1007Mousenucleus is_active_inIBAPANTHER:PTN001225435 more ...2290270 GO_CentralGO_REF:0000033
Zfp1007Mousenucleus located_inISOUniProtKB:O948922290270 GO_CentralGO_REF:0000119

Molecular Function

  


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21873635  



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Variants in Zfp1007
1260 total Variants

Predicted Target Of
Summary Value
Count of predictions:241
Count of miRNA genes:190
Interacting mature miRNAs:205
Transcripts:ENSMUST00000092720
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 66 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse

1 to 10 of 66 rows





RefSeq Transcripts NM_001378588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000092720   ⟹   ENSMUSP00000090395
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5109,822,411 - 109,838,907 (-)Ensembl
GRCm38.p6 Ensembl5109,674,545 - 109,691,041 (-)Ensembl
RefSeq Acc Id: NM_001378588   ⟹   NP_001365517
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395109,822,409 - 109,838,700 (-)NCBI
GRCm385109,674,543 - 109,690,834 (-)NCBI
Sequence:
Protein RefSeqs NP_001365517 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000090395
  ENSMUSP00000090395.4
RefSeq Acc Id: NP_001365517   ⟸   NM_001378588
- UniProtKB: D3Z5L4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000090395   ⟸   ENSMUST00000092720
C2H2-type   KRAB

Name Modeler Protein Id AA Range Protein Structure
AF-D3Z5L4-F1-model_v2 AlphaFold D3Z5L4 1-667 view protein structure



1 to 25 of 25 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000072763 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000092720 ENTREZGENE
  ENSMUST00000092720.4 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
MGD MGI:1924450 ENTREZGENE
NCBI Gene 77200 ENTREZGENE
PANTHER NOVEL KRAB BOX AND ZINC FINGER, C2H2 TYPE DOMAIN CONTAINING PROTEIN-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Zfp1007 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt D3Z5L4 ENTREZGENE, UniProtKB/TrEMBL
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-08 Zfp1007  zinc finger protein 1007  5430403G16Rik  RIKEN cDNA 5430403G16 gene  Symbol and/or name updated 27372883 PROVISIONAL