RBAK (RB associated KRAB zinc finger) - Rat Genome Database

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Gene: RBAK (RB associated KRAB zinc finger) Homo sapiens
Analyze
Symbol: RBAK
Name: RB associated KRAB zinc finger
RGD ID: 1602691
HGNC Page HGNC:17680
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: hRBaK; RB-associated KRAB repressor; RB-associated KRAB zinc finger protein; zinc finger protein 769; ZNF769
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3875,045,860 - 5,069,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl75,045,821 - 5,069,487 (+)EnsemblGRCh38hg38GRCh38
GRCh3775,085,491 - 5,109,118 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,052,079 - 5,075,645 (+)NCBINCBI36Build 36hg18NCBI36
Celera75,044,901 - 5,068,467 (+)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef75,000,481 - 5,024,148 (+)NCBIHuRef
CHM1_175,085,039 - 5,108,706 (+)NCBICHM1_1
T2T-CHM13v2.075,163,659 - 5,187,282 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v275,131,807 - 5,155,474 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBAKHumanBaraitser-Winter syndrome 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Baraitser-Winter syndrome 1ClinVarPMID:27633570 more ...
RBAKHumanmegacolon  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
RBAKHumanprostate cancer  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant tumor of prostateClinVarPMID:23265383

1 to 20 of 53 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBAKHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISORbak (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of RBAK mRNACTDPMID:21570461
RBAKHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISORbak (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of RBAK mRNACTDPMID:33387578
RBAKHuman4,4'-diaminodiphenylmethane increases expressionISORbak (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of RBAK mRNACTDPMID:18648102
RBAKHuman4-hydroxyphenyl retinamide increases expressionEXP 6480464Fenretinide results in increased expression of RBAK mRNACTDPMID:16570282
RBAKHumanacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of RBAK mRNACTDPMID:32763439
RBAKHumanaflatoxin B1 decreases expressionISORbak (Rattus norvegicus)6480464Aflatoxin B1 results in decreased expression of RBAK mRNACTDPMID:33354967
RBAKHumanaflatoxin M1 decreases expressionEXP 6480464Aflatoxin M1 results in decreased expression of RBAK mRNACTDPMID:30928695
RBAKHumanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of RBAK mRNACTDPMID:33212167
RBAKHumanAroclor 1254 decreases expressionEXP 6480464Chlorodiphenyl (54% Chlorine) results in decreased expression of RBAK mRNACTDPMID:16934159
RBAKHumanbisphenol A affects expressionISORbak (Rattus norvegicus)6480464bisphenol A affects the expression of RBAK mRNACTDPMID:25181051
RBAKHumanbisphenol A decreases expressionISORbak (Rattus norvegicus)6480464bisphenol A results in decreased expression of RBAK mRNACTDPMID:34947998
RBAKHumanbisphenol A decreases methylationISORbak (Rattus norvegicus)6480464bisphenol A results in decreased methylation of RBAK geneCTDPMID:28505145
RBAKHumanbisphenol F decreases expressionISORbak (Mus musculus)6480464bisphenol F results in decreased expression of RBAK mRNACTDPMID:38685157
RBAKHumanbutanal decreases expressionEXP 6480464butyraldehyde results in decreased expression of RBAK mRNACTDPMID:26079696
RBAKHumancarbon nanotube decreases expressionISORbak (Mus musculus)6480464Nanotubes more ...CTDPMID:25554681
RBAKHumanchlorpyrifos decreases expressionISORbak (Mus musculus)6480464Chlorpyrifos results in decreased expression of RBAK mRNACTDPMID:37019170
RBAKHumancopper(II) sulfate increases expressionEXP 6480464Copper Sulfate results in increased expression of RBAK mRNACTDPMID:19549813
RBAKHumanDibutyl phosphate affects expressionEXP 6480464di-n-butylphosphoric acid affects the expression of RBAK mRNACTDPMID:37042841
RBAKHumandicrotophos decreases expressionEXP 6480464dicrotophos results in decreased expression of RBAK mRNACTDPMID:28302478
RBAKHumandorsomorphin multiple interactionsEXP 6480464[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...CTDPMID:27188386

1 to 20 of 53 rows

Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBAKHumannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
RBAKHumannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
RBAKHumannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
RBAKHumannucleus located_inTAS 150520179 PMID:10702291UniProtPMID:10702291

Molecular Function

  

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RBAKHumanMegacolon  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
RBAKHumanProstate cancer  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Prostatic cancerClinVarPMID:23265383

#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10702291   PMID:12070015   PMID:12477932   PMID:14664718   PMID:14702039   PMID:16344560   PMID:17121540   PMID:18307725   PMID:19240061   PMID:19274049   PMID:19284880   PMID:20360068  
PMID:20466629   PMID:21549307   PMID:21873635   PMID:26186194   PMID:28514442   PMID:28625976   PMID:29180619   PMID:29987050   PMID:32296183   PMID:33321125   PMID:33961781   PMID:34079125  
PMID:34189442   PMID:35256949   PMID:35271311   PMID:35563538   PMID:36089195   PMID:36339263  



RBAK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3875,045,860 - 5,069,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl75,045,821 - 5,069,487 (+)EnsemblGRCh38hg38GRCh38
GRCh3775,085,491 - 5,109,118 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,052,079 - 5,075,645 (+)NCBINCBI36Build 36hg18NCBI36
Celera75,044,901 - 5,068,467 (+)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef75,000,481 - 5,024,148 (+)NCBIHuRef
CHM1_175,085,039 - 5,108,706 (+)NCBICHM1_1
T2T-CHM13v2.075,163,659 - 5,187,282 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v275,131,807 - 5,155,474 (+)NCBI
Rbak
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,157,941 - 143,166,530 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,157,941 - 143,166,530 (-)EnsemblGRCm39 Ensembl
GRCm385143,172,186 - 143,180,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,172,186 - 143,180,775 (-)EnsemblGRCm38mm10GRCm38
MGSCv375143,933,867 - 143,942,422 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,437,326 - 143,445,915 (-)NCBIMGSCv36mm8
Celera5140,216,911 - 140,225,466 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.98NCBI
Rbak
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,488,895 - 16,502,523 (+)NCBIGRCr8
mRatBN7.21211,375,314 - 11,388,937 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,375,318 - 11,388,934 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,184,277 - 12,196,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,807,555 - 12,819,766 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,833,653 - 11,845,864 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,428,648 - 13,442,279 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,428,685 - 13,442,286 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,468,852 - 15,482,466 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,748,333 - 11,760,544 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,168,595 - 13,180,802 (+)NCBICelera
Cytogenetic Map12p11NCBI
RBAK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2610,013,378 - 10,037,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1758,338,781 - 58,358,815 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v075,304,827 - 5,328,372 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.175,332,884 - 5,356,307 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl75,344,120 - 5,356,307 (+)Ensemblpanpan1.1panPan2
RBAK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,072,465 - 12,097,422 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,073,368 - 12,093,811 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,326,735 - 18,342,501 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,166,066 - 12,194,774 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1612,033,522 - 12,049,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,954,564 - 11,982,773 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,207,419 - 12,259,386 (+)NCBIUU_Cfam_GSD_1.0
Rbak
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,321,392 - 140,339,751 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936765315,255 - 326,409 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936765312,474 - 327,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBAK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,422,784 - 4,439,945 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,422,481 - 4,439,943 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23144,137,154 - 144,154,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBAK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,594,449 - 16,648,577 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660905,279,291 - 5,326,056 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbak
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474027,682,835 - 27,701,904 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474027,681,328 - 27,700,055 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in RBAK
50 total Variants

1 to 10 of 113 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 7p22.2-22.1(chr7:4469558-5111872)x3 copy number gain See cases [RCV000050969] Chr7:4469558..5111872 [GRCh38]
Chr7:4509189..5151503 [GRCh37]
Chr7:4475715..5118029 [NCBI36]
Chr7:7p22.2-22.1
uncertain significance
GRCh38/hg38 7p22.3-14.1(chr7:54185-41875885)x3 copy number gain See cases [RCV000051159] Chr7:54185..41875885 [GRCh38]
Chr7:54185..41915483 [GRCh37]
Chr7:149268..41882008 [NCBI36]
Chr7:7p22.3-14.1
pathogenic
GRCh38/hg38 7p22.1(chr7:4532619-5378373)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052255]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052255]|See cases [RCV000052255] Chr7:4532619..5378373 [GRCh38]
Chr7:4572250..5418004 [GRCh37]
Chr7:4538776..5384530 [NCBI36]
Chr7:7p22.1
pathogenic
GRCh38/hg38 7p22.1(chr7:5062000-6692258)x1 copy number loss See cases [RCV000052256] Chr7:5062000..6692258 [GRCh38]
Chr7:5101631..6731889 [GRCh37]
Chr7:5068157..6698414 [NCBI36]
Chr7:7p22.1
pathogenic
GRCh38/hg38 7p22.1(chr7:5062000-5825183)x1 copy number loss See cases [RCV000052263] Chr7:5062000..5825183 [GRCh38]
Chr7:5101631..5864814 [GRCh37]
Chr7:5068157..5831340 [NCBI36]
Chr7:7p22.1
pathogenic
GRCh38/hg38 7p22.3-22.1(chr7:45130-5880375)x1 copy number loss See cases [RCV000052249] Chr7:45130..5880375 [GRCh38]
Chr7:45130..5920006 [GRCh37]
Chr7:140213..5886532 [NCBI36]
Chr7:7p22.3-22.1
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7p22.1(chr7:4876621-6492003)x3 copy number gain See cases [RCV000053408] Chr7:4876621..6492003 [GRCh38]
Chr7:4916252..6531634 [GRCh37]
Chr7:4882778..6498159 [NCBI36]
Chr7:7p22.1
uncertain significance
GRCh38/hg38 7p22.3-22.1(chr7:45130-6270185)x3 copy number gain See cases [RCV000053527] Chr7:45130..6270185 [GRCh38]
Chr7:45130..6309816 [GRCh37]
Chr7:140213..6276341 [NCBI36]
Chr7:7p22.3-22.1
pathogenic
GRCh38/hg38 7p22.3-15.3(chr7:53985-24361531)x3 copy number gain See cases [RCV000053528] Chr7:53985..24361531 [GRCh38]
Chr7:53985..24401150 [GRCh37]
Chr7:149068..24367675 [NCBI36]
Chr7:7p22.3-15.3
pathogenic
1 to 10 of 113 rows

Predicted Target Of
Summary Value
Count of predictions:2889
Count of miRNA genes:1067
Interacting mature miRNAs:1278
Transcripts:ENST00000353796, ENST00000396904, ENST00000396912, ENST00000407184, ENST00000476992, ENST00000498308
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643402BMD2_HBone mineral density QTL 2 (human)2.690.0002Bone mineral density7122435431Human
1643247BW130_HBody Weight QTL 130 (human)1.280.008Body weightbody mass index7117453493Human
1643391BW322_HBody weight QTL 322 (human)2.690.0002Body fat amount7122435431Human

RH12523  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3775,108,949 - 5,109,079UniSTSGRCh37
Build 3675,075,475 - 5,075,605RGDNCBI36
Celera75,068,297 - 5,068,427RGD
Cytogenetic Map7p22.1UniSTS
HuRef75,023,978 - 5,024,108UniSTS
CRA_TCAGchr7v275,155,304 - 5,155,434UniSTS
GeneMap99-GB4 RH Map731.6UniSTS
NCBI RH Map788.2UniSTS
RBAK_3666  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3775,106,105 - 5,106,870UniSTSGRCh37
Build 3675,072,631 - 5,073,396RGDNCBI36
Celera75,065,453 - 5,066,218RGD
HuRef75,021,134 - 5,021,899UniSTS
CRA_TCAGchr7v275,152,460 - 5,153,225UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1



Ensembl Acc Id: ENST00000353796   ⟹   ENSP00000275423
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl75,045,821 - 5,067,257 (+)Ensembl
Ensembl Acc Id: ENST00000396912   ⟹   ENSP00000380120
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl75,045,860 - 5,069,487 (+)Ensembl
Ensembl Acc Id: ENST00000476992
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl75,056,987 - 5,063,875 (+)Ensembl
RefSeq Acc Id: NM_001204456   ⟹   NP_001191385
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3875,045,860 - 5,069,487 (+)NCBI
GRCh3775,085,452 - 5,109,119 (+)ENTREZGENE
HuRef75,000,481 - 5,024,148 (+)ENTREZGENE
CHM1_175,085,039 - 5,108,706 (+)NCBI
T2T-CHM13v2.075,163,659 - 5,187,282 (+)NCBI
CRA_TCAGchr7v275,131,807 - 5,155,474 (+)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_021163   ⟹   NP_066986
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3875,045,860 - 5,069,487 (+)NCBI
GRCh3775,085,452 - 5,109,119 (+)ENTREZGENE
Build 3675,052,079 - 5,075,645 (+)NCBI Archive
Celera75,044,901 - 5,068,467 (+)RGD
HuRef75,000,481 - 5,024,148 (+)ENTREZGENE
CHM1_175,085,140 - 5,108,706 (+)NCBI
T2T-CHM13v2.075,163,659 - 5,187,282 (+)NCBI
CRA_TCAGchr7v275,131,807 - 5,155,474 (+)ENTREZGENE
Sequence:
1 to 13 of 13 rows
Protein RefSeqs NP_001191385 (Get FASTA)   NCBI Sequence Viewer  
  NP_066986 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI36676 (Get FASTA)   NCBI Sequence Viewer  
  AAI36677 (Get FASTA)   NCBI Sequence Viewer  
  AAQ93364 (Get FASTA)   NCBI Sequence Viewer  
  BAF85758 (Get FASTA)   NCBI Sequence Viewer  
  CCQ43665 (Get FASTA)   NCBI Sequence Viewer  
  EAW87321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000275423
  ENSP00000275423.4
  ENSP00000380120
  ENSP00000380120.1
GenBank Protein Q9NYW8 (Get FASTA)   NCBI Sequence Viewer  
1 to 13 of 13 rows
RefSeq Acc Id: NP_066986   ⟸   NM_021163
- UniProtKB: B9EGS1 (UniProtKB/Swiss-Prot),   B2RN44 (UniProtKB/Swiss-Prot),   A8KAK4 (UniProtKB/Swiss-Prot),   A6NDF2 (UniProtKB/Swiss-Prot),   F8W6M7 (UniProtKB/Swiss-Prot),   Q9NYW8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001191385   ⟸   NM_001204456
- UniProtKB: B9EGS1 (UniProtKB/Swiss-Prot),   B2RN44 (UniProtKB/Swiss-Prot),   A8KAK4 (UniProtKB/Swiss-Prot),   A6NDF2 (UniProtKB/Swiss-Prot),   F8W6M7 (UniProtKB/Swiss-Prot),   Q9NYW8 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000275423   ⟸   ENST00000353796
Ensembl Acc Id: ENSP00000380120   ⟸   ENST00000396912
KRAB

Name Modeler Protein Id AA Range Protein Structure
AF-Q9NYW8-F1-model_v2 AlphaFold Q9NYW8 1-714 view protein structure

RGD ID:7209851
Promoter ID:EPDNEW_H10672
Type:initiation region
Name:RBAK_1
Description:RB associated KRAB zinc finger
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10670  EPDNEW_H10671  EPDNEW_H10673  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3875,045,860 - 5,045,920EPDNEW
RGD ID:6805547
Promoter ID:HG_KWN:56127
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000396904,   NM_021163,   UC010KSS.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3675,051,786 - 5,052,286 (+)MPROMDB
RGD ID:7209855
Promoter ID:EPDNEW_H10673
Type:multiple initiation site
Name:RBAK_3
Description:RB associated KRAB zinc finger
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10670  EPDNEW_H10672  EPDNEW_H10671  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3875,067,829 - 5,067,889EPDNEW


1 to 40 of 42 rows
Database
Acc Id
Source(s)
COSMIC RBAK COSMIC
Ensembl Genes ENSG00000146587 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000353796 ENTREZGENE
  ENST00000353796.7 UniProtKB/Swiss-Prot
  ENST00000396912 ENTREZGENE
  ENST00000396912.2 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot
GTEx ENSG00000146587 GTEx
HGNC ID HGNC:17680 ENTREZGENE
Human Proteome Map RBAK Human Proteome Map
InterPro KRAB UniProtKB/Swiss-Prot
  KRAB_dom_sf UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report hsa:57786 UniProtKB/Swiss-Prot
NCBI Gene 57786 ENTREZGENE
OMIM 608191 OMIM
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/Swiss-Prot
Pfam KRAB UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
PharmGKB PA162400745 PharmGKB
PROSITE KRAB UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART KRAB UniProtKB/Swiss-Prot
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot
  SSF57667 UniProtKB/Swiss-Prot
UniProt A6NDF2 ENTREZGENE
  A8KAK4 ENTREZGENE
  B2RN44 ENTREZGENE
  B9EGS1 ENTREZGENE
  F8W6M7 ENTREZGENE
  L8E8N4_HUMAN UniProtKB/TrEMBL
  Q9NYW8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A6NDF2 UniProtKB/Swiss-Prot
  A8KAK4 UniProtKB/Swiss-Prot
  B2RN44 UniProtKB/Swiss-Prot
1 to 40 of 42 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-16 RBAK  RB associated KRAB zinc finger    RB-associated KRAB zinc finger  Symbol and/or name change 5135510 APPROVED