RBAK (RB associated KRAB zinc finger) - Rat Genome Database

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Gene: RBAK (RB associated KRAB zinc finger) Canis lupus familiaris
Analyze
Symbol: RBAK
Name: RB associated KRAB zinc finger
RGD ID: 12416472
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Baraitser-Winter syndrome 1 (ortholog); megacolon (ortholog); prostate cancer (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC489877; uncharacterized protein LOC489877; uncharacterized protein RBAK; zinc finger protein 316
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,072,465 - 12,097,422 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,073,368 - 12,093,811 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,326,735 - 18,342,501 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,166,066 - 12,194,774 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1612,033,522 - 12,049,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,954,564 - 11,982,773 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,207,419 - 12,259,386 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
RBAK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,072,465 - 12,097,422 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,073,368 - 12,093,811 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,326,735 - 18,342,501 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,166,066 - 12,194,774 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1612,033,522 - 12,049,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,954,564 - 11,982,773 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,207,419 - 12,259,386 (+)NCBIUU_Cfam_GSD_1.0
RBAK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3875,045,860 - 5,069,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl75,045,821 - 5,069,487 (+)EnsemblGRCh38hg38GRCh38
GRCh3775,085,491 - 5,109,118 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,052,079 - 5,075,645 (+)NCBINCBI36Build 36hg18NCBI36
Celera75,044,901 - 5,068,467 (+)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef75,000,481 - 5,024,148 (+)NCBIHuRef
CHM1_175,085,039 - 5,108,706 (+)NCBICHM1_1
T2T-CHM13v2.075,163,659 - 5,187,282 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v275,131,807 - 5,155,474 (+)NCBI
Rbak
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,157,941 - 143,166,530 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,157,941 - 143,166,530 (-)EnsemblGRCm39 Ensembl
GRCm385143,172,186 - 143,180,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,172,186 - 143,180,775 (-)EnsemblGRCm38mm10GRCm38
MGSCv375143,933,867 - 143,942,422 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,437,326 - 143,445,915 (-)NCBIMGSCv36mm8
Celera5140,216,911 - 140,225,466 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.98NCBI
Rbak
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,488,895 - 16,502,523 (+)NCBIGRCr8
mRatBN7.21211,375,314 - 11,388,937 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,375,318 - 11,388,934 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,184,277 - 12,196,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,807,555 - 12,819,766 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,833,653 - 11,845,864 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,428,648 - 13,442,279 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,428,685 - 13,442,286 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,468,852 - 15,482,466 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,748,333 - 11,760,544 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,168,595 - 13,180,802 (+)NCBICelera
Cytogenetic Map12p11NCBI
RBAK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2610,013,378 - 10,037,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1758,338,781 - 58,358,815 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v075,304,827 - 5,328,372 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.175,332,884 - 5,356,307 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl75,344,120 - 5,356,307 (+)Ensemblpanpan1.1panPan2
Rbak
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,321,392 - 140,339,751 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936765315,255 - 326,409 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936765312,474 - 327,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBAK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,422,784 - 4,439,945 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,422,481 - 4,439,943 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23144,137,154 - 144,154,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBAK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,594,449 - 16,648,577 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660905,279,291 - 5,326,056 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbak
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474027,682,835 - 27,701,904 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474027,681,328 - 27,700,055 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RBAK
375 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005621128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038539545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038542211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038542221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038668329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005326736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005360624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005361988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005395153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005428289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000048422   ⟹   ENSCAFP00000040690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl612,085,556 - 12,093,811 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000049871   ⟹   ENSCAFP00000042457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl612,073,368 - 12,093,811 (+)Ensembl
RefSeq Acc Id: XM_038478287   ⟹   XP_038334215
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1612,033,522 - 12,049,283 (+)NCBI
RefSeq Acc Id: XM_038478288   ⟹   XP_038334216
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1612,047,568 - 12,049,283 (+)NCBI
RefSeq Acc Id: XM_038539540   ⟹   XP_038395468
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0612,243,623 - 12,259,386 (+)NCBI
RefSeq Acc Id: XM_038539541   ⟹   XP_038395469
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0612,230,840 - 12,259,386 (+)NCBI
RefSeq Acc Id: XM_038539542   ⟹   XP_038395470
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0612,231,395 - 12,259,386 (+)NCBI
RefSeq Acc Id: XM_038539543   ⟹   XP_038395471
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0612,207,419 - 12,259,386 (+)NCBI
RefSeq Acc Id: XM_038539545   ⟹   XP_038395473
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0612,257,671 - 12,259,386 (+)NCBI
RefSeq Acc Id: XM_038542211   ⟹   XP_038398139
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha618,326,735 - 18,342,501 (-)NCBI
RefSeq Acc Id: XM_038542221   ⟹   XP_038398149
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha618,326,735 - 18,328,450 (-)NCBI
RefSeq Acc Id: XM_038603624   ⟹   XP_038459552
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0611,967,467 - 11,982,773 (+)NCBI
RefSeq Acc Id: XM_038603625   ⟹   XP_038459553
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0611,954,564 - 11,982,773 (+)NCBI
RefSeq Acc Id: XM_038603626   ⟹   XP_038459554
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0611,954,968 - 11,982,773 (+)NCBI
RefSeq Acc Id: XM_038603627   ⟹   XP_038459555
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0611,981,059 - 11,982,773 (+)NCBI
RefSeq Acc Id: XM_038668326   ⟹   XP_038524254
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0612,179,007 - 12,194,774 (+)NCBI
RefSeq Acc Id: XM_038668327   ⟹   XP_038524255
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0612,166,066 - 12,194,774 (+)NCBI
RefSeq Acc Id: XM_038668328   ⟹   XP_038524256
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0612,166,477 - 12,194,774 (+)NCBI
RefSeq Acc Id: XM_038668329   ⟹   XP_038524257
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0612,193,059 - 12,194,774 (+)NCBI
RefSeq Acc Id: XR_005326736
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1612,048,004 - 12,049,283 (+)NCBI
RefSeq Acc Id: XR_005360624
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0612,258,107 - 12,259,386 (+)NCBI
RefSeq Acc Id: XR_005361988
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha618,326,735 - 18,328,014 (-)NCBI
RefSeq Acc Id: XR_005395153
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0611,981,494 - 11,982,773 (+)NCBI
RefSeq Acc Id: XR_005428289
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0612,193,495 - 12,194,774 (+)NCBI
Ensembl Acc Id: ENSCAFP00000042457   ⟸   ENSCAFT00000049871
Ensembl Acc Id: ENSCAFP00000040690   ⟸   ENSCAFT00000048422
RefSeq Acc Id: XP_038334215   ⟸   XM_038478287
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038334216   ⟸   XM_038478288
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038459553   ⟸   XM_038603625
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038459554   ⟸   XM_038603626
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038459552   ⟸   XM_038603624
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038459555   ⟸   XM_038603627
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038524255   ⟸   XM_038668327
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038524256   ⟸   XM_038668328
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038524254   ⟸   XM_038668326
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038524257   ⟸   XM_038668329
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038398139   ⟸   XM_038542211
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038398149   ⟸   XM_038542221
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038395471   ⟸   XM_038539543
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038395469   ⟸   XM_038539541
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038395470   ⟸   XM_038539542
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038395468   ⟸   XM_038539540
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038395473   ⟸   XM_038539545
- Peptide Label: isoform X3
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029211 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000049871.4 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC489877 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
  KRAB domain (Kruppel-associated box) UniProtKB/TrEMBL
UniProt A0A8P0SVV9_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:59397 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 RBAK  RB associated KRAB zinc finger  LOC489877  RB-associated KRAB zinc finger protein  Symbol and/or name change 5135510 APPROVED