Rbak (RB-associated KRAB zinc finger)

Gene: Rbak (RB-associated KRAB zinc finger) Mus musculus

Analyze

Symbol:

Rbak

Name:

RB-associated KRAB zinc finger

RGD ID:

1558489

MGI Page

MGI

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in central nervous system; early conceptus; and genitourinary system. Orthologous to human RBAK (RB associated KRAB zinc finger).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

RB-associated KRAB repressor; RB-associated KRAB zinc finger protein; zinc finger protein 769

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	143,157,941 - 143,166,530 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	143,157,941 - 143,166,530 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	143,172,186 - 143,180,775 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	143,172,186 - 143,180,775 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	143,933,867 - 143,942,422 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	143,437,326 - 143,445,915 (-)	NCBI		MGSCv36	mm8
Celera	5	140,216,911 - 140,225,466 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	81.98	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

megacolon (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

bisphenol A (ISO)

butanal (ISO)

carbon nanotube (EXP)

chlorpyrifos (EXP)

copper(II) sulfate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ferric oxide (EXP)

folic acid (EXP)

formaldehyde (ISO)

geldanamycin (ISO)

gentamycin (ISO)

mercury dichloride (ISO)

methotrexate (EXP)

methylmercury chloride (ISO)

p-chloromercuribenzoic acid (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP)

quercitrin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sunitinib (ISO)

thimerosal (ISO)

titanium dioxide (EXP)

trichostatin A (ISO)

triptonide (EXP)

trovafloxacin (EXP)

valproic acid (ISO)

vinclozolin (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (ISO)

nucleus (IBA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse brain organization revealed through direct genome-scale TF expression analysis.	Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10702291	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:14691545	PMID:16141072	PMID:16141073	PMID:18287559
PMID:20059953	PMID:20412781	PMID:21267068	PMID:21677750	PMID:21873635	PMID:30973865	PMID:32325033

Genomics

Comparative Map Data

Rbak
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	143,157,941 - 143,166,530 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	143,157,941 - 143,166,530 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	143,172,186 - 143,180,775 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	143,172,186 - 143,180,775 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	143,933,867 - 143,942,422 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	143,437,326 - 143,445,915 (-)	NCBI		MGSCv36	mm8
Celera	5	140,216,911 - 140,225,466 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	81.98	NCBI

RBAK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	5,045,860 - 5,069,487 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	5,045,821 - 5,069,487 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	5,085,491 - 5,109,118 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	5,052,079 - 5,075,645 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	5,044,901 - 5,068,467 (+)	NCBI		Celera
Cytogenetic Map	7	p22.1	NCBI
HuRef	7	5,000,481 - 5,024,148 (+)	NCBI		HuRef
CHM1_1	7	5,085,039 - 5,108,706 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	5,163,659 - 5,187,282 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	5,131,807 - 5,155,474 (+)	NCBI

Rbak
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	16,488,895 - 16,502,523 (+)	NCBI		GRCr8
mRatBN7.2	12	11,375,314 - 11,388,937 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	11,375,318 - 11,388,934 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	12,184,277 - 12,196,488 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	12,807,555 - 12,819,766 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	11,833,653 - 11,845,864 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	13,428,648 - 13,442,279 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	13,428,685 - 13,442,286 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	15,468,852 - 15,482,466 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	11,748,333 - 11,760,544 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	13,168,595 - 13,180,802 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

RBAK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	10,013,378 - 10,037,654 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	58,338,781 - 58,358,815 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	5,304,827 - 5,328,372 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	5,332,884 - 5,356,307 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	5,344,120 - 5,356,307 (+)	Ensembl	panpan1.1		panPan2

RBAK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	12,072,465 - 12,097,422 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	12,073,368 - 12,093,811 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	18,326,735 - 18,342,501 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	12,166,066 - 12,194,774 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	6	12,033,522 - 12,049,283 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	11,954,564 - 11,982,773 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	12,207,419 - 12,259,386 (+)	NCBI		UU_Cfam_GSD_1.0

Rbak
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	140,321,392 - 140,339,751 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936765	315,255 - 326,409 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936765	312,474 - 327,089 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBAK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	4,422,784 - 4,439,945 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	4,422,481 - 4,439,943 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	144,137,154 - 144,154,400 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBAK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	16,594,449 - 16,648,577 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666090	5,279,291 - 5,326,056 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbak
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	27,682,835 - 27,701,904 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	27,681,328 - 27,700,055 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rbak
340 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	816
Count of miRNA genes:	262
Interacting mature miRNAs:	290
Transcripts:	ENSMUST00000049861, ENSMUST00000164068, ENSMUST00000165318, ENSMUST00000166382
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301362	Prnr1_m	prion resistance 1 (mouse)			Not determined		5	89418876	146787935	Mouse
10412197	Bbaa25_m	B.burgdorferi-associated arthritis 25 (mouse)			Not determined		5	109167240	143167381	Mouse
13464251	Ahl21_m	age related hearing loss, early onset 21 (mouse)					5	109167240	143167381	Mouse
1300913	Bwefm_m	body weight females and males day 10 (mouse)			Not determined		5	109439348	143439459	Mouse
1301226	Bbaa2_m	B.burgdorferi-associated arthritis 2 (mouse)			Not determined		5	115156883	149157015	Mouse
1300827	Cora1_m	correlation in cytokine production 1 (mouse)			Not determined		5	115156883	149157015	Mouse
1301857	Bglq14_m	body growth late QTL 14 (mouse)			Not determined		5	118948964	151758149	Mouse
4141081	Nidd7k_m	Nidd7 on KK-A (mouse)			Not determined			119945037	149347326	Mouse
11528552	Scram1_m	spinal cord resistance to astrocytoma modifier 1 (mouse)					5	121455402	151758149	Mouse
1301986	Bpq4_m	blood pressure QTL 4 (mouse)			Not determined		5	121555236	151758149	Mouse
1302079	Lbw3_m	lupus NZB x NZW 3 (mouse)			Not determined		5	124700335	151758149	Mouse
1301363	Pbwg13_m	postnatal body weight growth 13 (mouse)			Not determined		5	125133457	151758149	Mouse
4141218	Ath24_m	atherosclerosis 24 (mouse)			Not determined			129520084	151758149	Mouse
12880406	Jcdq2_m	joint cartilage degeneration QTL 2 (mouse)					5	129787831	151758149	Mouse
11049557	Lmr26_m	leishmaniasis resistance 26 (mouse)					5	133925558	151758149	Mouse
13504735	Ifvrq7_m	influenza virus resistance QTL 7 (mouse)					5	139509801	151658149	Mouse
13504737	Ifvrq5_m	influenza virus resistance QTL 5 (mouse)					5	139509801	151658149	Mouse
13504734	Ifvrq4_m	influenza virus resistance QTL 4 (mouse)					5	139985755	151658149	Mouse

Markers in Region

UniSTS:235361

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	143,172,259 - 143,172,479	UniSTS	GRCm38
MGSCv37	5	143,933,938 - 143,934,158	UniSTS	GRCm37
Celera	5	140,216,982 - 140,217,202	UniSTS
Cytogenetic Map	5	G2	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001045482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001359235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_021326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF226870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK051009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC059913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN699599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000049861 ⟹ ENSMUSP00000059273

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	143,157,941 - 143,166,485 (-)	Ensembl
GRCm38.p6 Ensembl	5	143,172,186 - 143,180,730 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000165318 ⟹ ENSMUSP00000128731

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	143,157,941 - 143,166,530 (-)	Ensembl
GRCm38.p6 Ensembl	5	143,172,186 - 143,180,775 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000166382

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	143,157,942 - 143,162,489 (-)	Ensembl
GRCm38.p6 Ensembl	5	143,172,187 - 143,176,734 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000199880

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	143,164,721 - 143,166,487 (-)	Ensembl
GRCm38.p6 Ensembl	5	143,178,966 - 143,180,732 (-)	Ensembl

RefSeq Acc Id:

NM_001045482 ⟹ NP_001038947

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	143,157,941 - 143,166,530 (-)	NCBI
GRCm38	5	143,172,186 - 143,180,775 (-)	NCBI
MGSCv37	5	143,933,867 - 143,942,422 (-)	RGD
Celera	5	140,216,909 - 140,225,498 (-)	NCBI
cM Map	5		ENTREZGENE

Sequence:

show sequence

CGCGCTTGCGCTGGGCCACTGCGCCGTGGTGACTTCCTGCAGGTCTGGTGTGTCGAGGCTACCT
TCCCTCCCGCAGCCTTTGCGTTCGCTAAGCTGGAGTTGCCGAGCCTGCAGGGCCGAGGCCGGAG
CTTCCGGGGCGGCAGCGAACAGACTCGGCTGTGCGGGCTAGGGAGGCCTAGCGAGAGCTCGGCG
CGGAGGCTGACAGGGGCAGCGGAGACGCCTGCTCGGTCAGTCAGCAGTGTCTACAGTTCCCCCA
AGAGGAGCAGAACATGAGCAGATCAAAGGGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTC
TCCCAGGAGGAGTGGCAGCAGCTGGACCCTGAGGAGAGGACCACATACAGGGATGTGATGCTGG
AGACCTACAGCAACCTCGTCTCCGTGGGGTATGACGTTACCAAGCCAAACATGATTATTAAGTT
GGAGCAGGGAGAAGAGCCCTGGACAGTGGAAGGTGACCGCCATGCTCAGAGGCATTTGGAAATC
AGTAAAGTTTATGACCCCAGAGAAGGAATTGAGGAAATTGGCGAGAAACATCTGCAGTGCGATG
ATGATCCCTACTGCTGGAGAGCTGAGAAGGGGGCTGCTTTTGATGAAGCCTACACCCTCGAAAC
AGCCCTCATTTCCCCCAGCTCAGGTGCTCACAGCTGTGTCTCCTGTGGGGAGACCCTGGAGTCT
GTTTCAGAACTGATTAGCAGTGACGGAAGCTATGCACTGGAGAAGCCCAGCATGTGTTTTGAGT
GTGGGAAAGCATACGGAGAAAGCCTTGAAGACTTCAACCAAGATGAGGGTAACTCCTCTCAACA
CGATGAAAATATTTTGCAGAAAGTCACCATTTTGGAGAAACCCTTTGCTTATGAGTGCATGGAA
GCCTTAGACAGTGAAAGTGTTTTCATGGCTCGTGAGAGAGCTTACATGGGGGAGAAGCCCTATG
ACTGGGGAGACTCTGGACCAGACTTCATCCAGATGTCGGACTTCAGTACATATCCGAGATCACA
AATGGAACTGAAGCCCTTCGAATGTACACAGTGTGGGAAGTCCTTCTGTAAGAAGTCCAAATTC
ATCATCCACCAGAGAGCTCACACAGGAGAGAAGCCGTACGCTTGTAGTGTGTGTGGAAAGTCCT
TCAGTCAAAAGGGAACCCTCACTGTACATCGGAGATCGCACTTAGAGGAGAAGCCCTATAAGTG
TAATGAGTGTGGGAAGACCTTTTGTCAGAAGTTACACCTCACACAGCACCAGAGGACTCACTCA
GGAGAGAAGCCCTATGAATGTAGCGAGTGCGGGAAGTCCTTCTGCCAGAAGACACACCTCACTC
TCCACCAGAGGAATCACTCAGGCGAGAGGCCCTACCCGTGTAATGAATGTGGGAAATCCTTCTC
CCGGAAGTCTGCCCTCAATGACCATCAGAGGACACACACAGGAGAGAAGCTCTATAAGTGTAAT
GAGTGTGGGAAATCCTACTACCGGAAGTCCACCCTCATTACACACCAGAGGACACACACAGGGG
AGAAGCCCTATCAGTGTAGTGAGTGTGGGAAATTCTTCTCTCGGGTGTCGTACCTCACCATACA
CTATCGGAGCCATTTAGAAGAGAAACCTTACGAGTGTACAGAATGTGGGAAAACCTTCAATCTA
AACTCTGCTTTCATTAGGCACTGGAAGGTCCATGCAGAAGAGAGAGTCCAGGAGTGTGGCGAGT
GTGGGAAGCCATCCCCGCTGCAGTGTGCCCCTGATCACACAGGCGACCTAGGAGAGAAGCGCTA
TGAGTGTAATGAGTGTGGAAAGACCTTCCTTGACAGCTCGGCCTTCCATAGGCACCAGTCCGTC
CCTGAAGGGGAGAAAACTTACGAGTGTAATATATGCGGAAAGTCCTTCTCGGATTCGTCATGCT
ACACTGTGCACTACAGAGGTCATTCCGAAGAGAAGCCCTTCGGGTGCAGTGAATGTGGGAAGAC
CTTCTCTCATAACTCATCCCTCTTCAGACATCAAAGGGTCCACACCGGCGAGAAGCCGTACGAG
TGTTACGAATGTGGGAAGTTCTTCTCTCAGAAGTCGTATCTCACTATCCATCACCGGATCCATT
CGGGAGAGAAGCCCTACGAGTGCAGCAAGTGTGGGAAAGTGTTCTCGCGGATGTCGAACCTCAC
CGTACACTACCGAAGCCATTCAGGAGAGAAGCCGTATGAGTGCAACGAGTGTGGGAAAGTCTTT
TCTCAGAAGTCGTACCTCACCGTGCATTACCGGACTCATTCAGGAGAGAAACCTTATGAATGTA
ACGAATGTGGGAAAAAATTCCACCACAGATCAGCCTTCAATAGCCATCAGAGAATTCATAAAAG
AGGCACTGTAAATGTACTCACTGTAGAAAAGCTCTGACATGCCAAGGTTTTTAAATTTTTTTTT
GGTTTTGGTTTTGGTTTTTTTGAAACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA
TTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGA
TTAAAGGTGTGTGCACCACCACTGCCCAGTGACATCTCAGTTCTTAAGAAAAGCATTTGGTTAT
AGTGAACATTGGAAGTCCAACAGGTAGTCAAGGGTGGACCCCCCTCAACCCCCCCCCCCAATTT
TCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATAGACATTCTGCAAGATTCACG
AGCTGAGCATCCACGCTCTTGAGTGTGGAGTCCTAAAACAAAGTCCATTTTAACTTGAGCTTTC
AGAGAGGAATCTGTGAAGCAACCCATGACCGTATGACTTATGGGACACTAGGTCATCTTTACAG
GAGTGAACCTTTGAAAGTATTTAATATTTATTTTTATTTAAATCGTATTTACATATCAGGGAGT
TCTGCTGTGAGCTGTCAGCTCCTGAGTATAACTCGCCTTGGAAACGCACACTAAAAGCCATATT
TCTGACCGACGTTACCACGGGTGTTCATGGAAAAGATGCAAGAAGCTATGAGTTCCGAATAAAC
TTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGC
TGTTCTAGACACGCAATTGAACAGTCTCTATGCAATGTTTCGCAATCTCGGCTTTGAATCATTT
GTGAGAACATGTCAGCAAGGATTAAAATGACTGTTACAGTGGGTACATGGGTGGGATGTGCTAG
CTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGTTTTTGTAAAAATA
TTTTCAACTGGAATTGAGCAAAAAAATTTTTTAAATACTATTTTGATAAACC

hide sequence

RefSeq Acc Id:

NM_001359235 ⟹ NP_001346164

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	143,157,941 - 143,166,530 (-)	NCBI
GRCm38	5	143,172,186 - 143,180,775 (-)	NCBI

Sequence:

show sequence

CGCGCTTGCGCTGGGCCACTGCGCCGTGGTGACTTCCTGCAGGTCTGGTGTGTCGAGGCTACCT
TCCCTCCCGCAGCCTTTGCGTTCGCTAAGCTGGAGTTGCCGAGCCTGCAGGGCCGAGGCCGGAG
CTTCCGGGGCGGCAGCGAACAGACTCGGCTGTGCGGGCTAGGGAGGCCTAGCGAGAGCTCGGCG
CGGAGGCTGACAGGGGCAGCGGAGACGCCTGCTCGCAGGTCAGTCAGCAGTGTCTACAGTTCCC
CCAAGAGGAGCAGAACATGAGCAGATCAAAGGGCCCACTGTCATTCAAGGATGTGGCTGTGGCC
TTCTCCCAGGAGGAGTGGCAGCAGCTGGACCCTGAGGAGAGGACCACATACAGGGATGTGATGC
TGGAGACCTACAGCAACCTCGTCTCCGTGGGGTATGACGTTACCAAGCCAAACATGATTATTAA
GTTGGAGCAGGGAGAAGAGCCCTGGACAGTGGAAGGTGACCGCCATGCTCAGAGGCATTTGGAA
ATCAGTAAAGTTTATGACCCCAGAGAAGGAATTGAGGAAATTGGCGAGAAACATCTGCAGTGCG
ATGATGATCCCTACTGCTGGAGAGCTGAGAAGGGGGCTGCTTTTGATGAAGCCTACACCCTCGA
AACAGCCCTCATTTCCCCCAGCTCAGGTGCTCACAGCTGTGTCTCCTGTGGGGAGACCCTGGAG
TCTGTTTCAGAACTGATTAGCAGTGACGGAAGCTATGCACTGGAGAAGCCCAGCATGTGTTTTG
AGTGTGGGAAAGCATACGGAGAAAGCCTTGAAGACTTCAACCAAGATGAGGGTAACTCCTCTCA
ACACGATGAAAATATTTTGCAGAAAGTCACCATTTTGGAGAAACCCTTTGCTTATGAGTGCATG
GAAGCCTTAGACAGTGAAAGTGTTTTCATGGCTCGTGAGAGAGCTTACATGGGGGAGAAGCCCT
ATGACTGGGGAGACTCTGGACCAGACTTCATCCAGATGTCGGACTTCAGTACATATCCGAGATC
ACAAATGGAACTGAAGCCCTTCGAATGTACACAGTGTGGGAAGTCCTTCTGTAAGAAGTCCAAA
TTCATCATCCACCAGAGAGCTCACACAGGAGAGAAGCCGTACGCTTGTAGTGTGTGTGGAAAGT
CCTTCAGTCAAAAGGGAACCCTCACTGTACATCGGAGATCGCACTTAGAGGAGAAGCCCTATAA
GTGTAATGAGTGTGGGAAGACCTTTTGTCAGAAGTTACACCTCACACAGCACCAGAGGACTCAC
TCAGGAGAGAAGCCCTATGAATGTAGCGAGTGCGGGAAGTCCTTCTGCCAGAAGACACACCTCA
CTCTCCACCAGAGGAATCACTCAGGCGAGAGGCCCTACCCGTGTAATGAATGTGGGAAATCCTT
CTCCCGGAAGTCTGCCCTCAATGACCATCAGAGGACACACACAGGAGAGAAGCTCTATAAGTGT
AATGAGTGTGGGAAATCCTACTACCGGAAGTCCACCCTCATTACACACCAGAGGACACACACAG
GGGAGAAGCCCTATCAGTGTAGTGAGTGTGGGAAATTCTTCTCTCGGGTGTCGTACCTCACCAT
ACACTATCGGAGCCATTTAGAAGAGAAACCTTACGAGTGTACAGAATGTGGGAAAACCTTCAAT
CTAAACTCTGCTTTCATTAGGCACTGGAAGGTCCATGCAGAAGAGAGAGTCCAGGAGTGTGGCG
AGTGTGGGAAGCCATCCCCGCTGCAGTGTGCCCCTGATCACACAGGCGACCTAGGAGAGAAGCG
CTATGAGTGTAATGAGTGTGGAAAGACCTTCCTTGACAGCTCGGCCTTCCATAGGCACCAGTCC
GTCCCTGAAGGGGAGAAAACTTACGAGTGTAATATATGCGGAAAGTCCTTCTCGGATTCGTCAT
GCTACACTGTGCACTACAGAGGTCATTCCGAAGAGAAGCCCTTCGGGTGCAGTGAATGTGGGAA
GACCTTCTCTCATAACTCATCCCTCTTCAGACATCAAAGGGTCCACACCGGCGAGAAGCCGTAC
GAGTGTTACGAATGTGGGAAGTTCTTCTCTCAGAAGTCGTATCTCACTATCCATCACCGGATCC
ATTCGGGAGAGAAGCCCTACGAGTGCAGCAAGTGTGGGAAAGTGTTCTCGCGGATGTCGAACCT
CACCGTACACTACCGAAGCCATTCAGGAGAGAAGCCGTATGAGTGCAACGAGTGTGGGAAAGTC
TTTTCTCAGAAGTCGTACCTCACCGTGCATTACCGGACTCATTCAGGAGAGAAACCTTATGAAT
GTAACGAATGTGGGAAAAAATTCCACCACAGATCAGCCTTCAATAGCCATCAGAGAATTCATAA
AAGAGGCACTGTAAATGTACTCACTGTAGAAAAGCTCTGACATGCCAAGGTTTTTAAATTTTTT
TTTGGTTTTGGTTTTGGTTTTTTTGAAACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAC
TCATTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTG
GGATTAAAGGTGTGTGCACCACCACTGCCCAGTGACATCTCAGTTCTTAAGAAAAGCATTTGGT
TATAGTGAACATTGGAAGTCCAACAGGTAGTCAAGGGTGGACCCCCCTCAACCCCCCCCCCCAA
TTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATAGACATTCTGCAAGATTC
ACGAGCTGAGCATCCACGCTCTTGAGTGTGGAGTCCTAAAACAAAGTCCATTTTAACTTGAGCT
TTCAGAGAGGAATCTGTGAAGCAACCCATGACCGTATGACTTATGGGACACTAGGTCATCTTTA
CAGGAGTGAACCTTTGAAAGTATTTAATATTTATTTTTATTTAAATCGTATTTACATATCAGGG
AGTTCTGCTGTGAGCTGTCAGCTCCTGAGTATAACTCGCCTTGGAAACGCACACTAAAAGCCAT
ATTTCTGACCGACGTTACCACGGGTGTTCATGGAAAAGATGCAAGAAGCTATGAGTTCCGAATA
AACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTC
TGCTGTTCTAGACACGCAATTGAACAGTCTCTATGCAATGTTTCGCAATCTCGGCTTTGAATCA
TTTGTGAGAACATGTCAGCAAGGATTAAAATGACTGTTACAGTGGGTACATGGGTGGGATGTGC
TAGCTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGTTTTTGTAAAA
ATATTTTCAACTGGAATTGAGCAAAAAAATTTTTTAAATACTATTTTGATAAACC

hide sequence

RefSeq Acc Id:

NM_021326 ⟹ NP_067301

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	143,157,941 - 143,166,530 (-)	NCBI
GRCm38	5	143,172,186 - 143,180,775 (-)	NCBI
MGSCv37	5	143,933,867 - 143,942,422 (-)	RGD
Celera	5	140,216,909 - 140,225,498 (-)	NCBI
cM Map	5		ENTREZGENE

Sequence:

show sequence

CGCGCTTGCGCTGGGCCACTGCGCCGTGGTGACTTCCTGCAGGTCTGGTGTGTCGAGGCTACCT
TCCCTCCCGCAGCCTTTGCGTTCGCTAAGCTGGAGTTGCCGAGCCTGCAGGGCCGAGGCCGGAG
CTTCCGGGGCGGCAGCGAACAGACTCGGCTGTGCGGGCTAGGGAGGCCTAGCGAGAGCTCGGCG
CGGAGGCTGACAGGGGCAGCGGAGACGCCTGCTCGTGTGTATAAGCTGCGATTTCACTTGGTGG
TTCCCAGGCGAGAGACATGTCCCTGTGTAGACCAGTTAATCTCCGATTTCAGCGAGCTTTTCCT
CCAGCAGGTCAGTCAGCAGTGTCTACAGTTCCCCCAAGAGGAGCAGAACATGAGCAGATCAAAG
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACC
CTGAGGAGAGGACCACATACAGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGGG
GTATGACGTTACCAAGCCAAACATGATTATTAAGTTGGAGCAGGGAGAAGAGCCCTGGACAGTG
GAAGGTGACCGCCATGCTCAGAGGCATTTGGAAATCAGTAAAGTTTATGACCCCAGAGAAGGAA
TTGAGGAAATTGGCGAGAAACATCTGCAGTGCGATGATGATCCCTACTGCTGGAGAGCTGAGAA
GGGGGCTGCTTTTGATGAAGCCTACACCCTCGAAACAGCCCTCATTTCCCCCAGCTCAGGTGCT
CACAGCTGTGTCTCCTGTGGGGAGACCCTGGAGTCTGTTTCAGAACTGATTAGCAGTGACGGAA
GCTATGCACTGGAGAAGCCCAGCATGTGTTTTGAGTGTGGGAAAGCATACGGAGAAAGCCTTGA
AGACTTCAACCAAGATGAGGGTAACTCCTCTCAACACGATGAAAATATTTTGCAGAAAGTCACC
ATTTTGGAGAAACCCTTTGCTTATGAGTGCATGGAAGCCTTAGACAGTGAAAGTGTTTTCATGG
CTCGTGAGAGAGCTTACATGGGGGAGAAGCCCTATGACTGGGGAGACTCTGGACCAGACTTCAT
CCAGATGTCGGACTTCAGTACATATCCGAGATCACAAATGGAACTGAAGCCCTTCGAATGTACA
CAGTGTGGGAAGTCCTTCTGTAAGAAGTCCAAATTCATCATCCACCAGAGAGCTCACACAGGAG
AGAAGCCGTACGCTTGTAGTGTGTGTGGAAAGTCCTTCAGTCAAAAGGGAACCCTCACTGTACA
TCGGAGATCGCACTTAGAGGAGAAGCCCTATAAGTGTAATGAGTGTGGGAAGACCTTTTGTCAG
AAGTTACACCTCACACAGCACCAGAGGACTCACTCAGGAGAGAAGCCCTATGAATGTAGCGAGT
GCGGGAAGTCCTTCTGCCAGAAGACACACCTCACTCTCCACCAGAGGAATCACTCAGGCGAGAG
GCCCTACCCGTGTAATGAATGTGGGAAATCCTTCTCCCGGAAGTCTGCCCTCAATGACCATCAG
AGGACACACACAGGAGAGAAGCTCTATAAGTGTAATGAGTGTGGGAAATCCTACTACCGGAAGT
CCACCCTCATTACACACCAGAGGACACACACAGGGGAGAAGCCCTATCAGTGTAGTGAGTGTGG
GAAATTCTTCTCTCGGGTGTCGTACCTCACCATACACTATCGGAGCCATTTAGAAGAGAAACCT
TACGAGTGTACAGAATGTGGGAAAACCTTCAATCTAAACTCTGCTTTCATTAGGCACTGGAAGG
TCCATGCAGAAGAGAGAGTCCAGGAGTGTGGCGAGTGTGGGAAGCCATCCCCGCTGCAGTGTGC
CCCTGATCACACAGGCGACCTAGGAGAGAAGCGCTATGAGTGTAATGAGTGTGGAAAGACCTTC
CTTGACAGCTCGGCCTTCCATAGGCACCAGTCCGTCCCTGAAGGGGAGAAAACTTACGAGTGTA
ATATATGCGGAAAGTCCTTCTCGGATTCGTCATGCTACACTGTGCACTACAGAGGTCATTCCGA
AGAGAAGCCCTTCGGGTGCAGTGAATGTGGGAAGACCTTCTCTCATAACTCATCCCTCTTCAGA
CATCAAAGGGTCCACACCGGCGAGAAGCCGTACGAGTGTTACGAATGTGGGAAGTTCTTCTCTC
AGAAGTCGTATCTCACTATCCATCACCGGATCCATTCGGGAGAGAAGCCCTACGAGTGCAGCAA
GTGTGGGAAAGTGTTCTCGCGGATGTCGAACCTCACCGTACACTACCGAAGCCATTCAGGAGAG
AAGCCGTATGAGTGCAACGAGTGTGGGAAAGTCTTTTCTCAGAAGTCGTACCTCACCGTGCATT
ACCGGACTCATTCAGGAGAGAAACCTTATGAATGTAACGAATGTGGGAAAAAATTCCACCACAG
ATCAGCCTTCAATAGCCATCAGAGAATTCATAAAAGAGGCACTGTAAATGTACTCACTGTAGAA
AAGCTCTGACATGCCAAGGTTTTTAAATTTTTTTTTGGTTTTGGTTTTGGTTTTTTTGAAACAG
GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCATTCTGTAGACCAGGCTGGCCTCGAACTC
AGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCA
GTGACATCTCAGTTCTTAAGAAAAGCATTTGGTTATAGTGAACATTGGAAGTCCAACAGGTAGT
CAAGGGTGGACCCCCCTCAACCCCCCCCCCCAATTTTCAATATATGTGGTGCTGGGATTCTGGG
CCTTTTGCATGCTATAGACATTCTGCAAGATTCACGAGCTGAGCATCCACGCTCTTGAGTGTGG
AGTCCTAAAACAAAGTCCATTTTAACTTGAGCTTTCAGAGAGGAATCTGTGAAGCAACCCATGA
CCGTATGACTTATGGGACACTAGGTCATCTTTACAGGAGTGAACCTTTGAAAGTATTTAATATT
TATTTTTATTTAAATCGTATTTACATATCAGGGAGTTCTGCTGTGAGCTGTCAGCTCCTGAGTA
TAACTCGCCTTGGAAACGCACACTAAAAGCCATATTTCTGACCGACGTTACCACGGGTGTTCAT
GGAAAAGATGCAAGAAGCTATGAGTTCCGAATAAACTTATAAAATGAAGTCATGAAGCCAGCAG
TTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGACACGCAATTGAACAGTCTC
TATGCAATGTTTCGCAATCTCGGCTTTGAATCATTTGTGAGAACATGTCAGCAAGGATTAAAAT
GACTGTTACAGTGGGTACATGGGTGGGATGTGCTAGCTGATAGGGAAGTACATAGCTTTCTATG
TCGGTGCTTACCCGTAGAGTGGTTTTTGTAAAAATATTTTCAACTGGAATTGAGCAAAAAAATT
TTTTAAATACTATTTTGATAAACC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001038947	(Get FASTA)	NCBI Sequence Viewer
	NP_001346164	(Get FASTA)	NCBI Sequence Viewer
	NP_067301	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF43390	(Get FASTA)	NCBI Sequence Viewer
	BAC34495	(Get FASTA)	NCBI Sequence Viewer
	EDL19069	(Get FASTA)	NCBI Sequence Viewer
	EDL19070	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000059273
	ENSMUSP00000059273.5
	ENSMUSP00000128731
	ENSMUSP00000128731.2
GenBank Protein	Q8BQC8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_067301 ⟸ NM_021326

- UniProtKB:

Q6PB38 (UniProtKB/Swiss-Prot), Q9JKU4 (UniProtKB/Swiss-Prot), Q8BQC8 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSRSKGPLSFKDVAVAFSQEEWQQLDPEERTTYRDVMLETYSNLVSVGYDVTKPNMIIKLEQGE
EPWTVEGDRHAQRHLEISKVYDPREGIEEIGEKHLQCDDDPYCWRAEKGAAFDEAYTLETALIS
PSSGAHSCVSCGETLESVSELISSDGSYALEKPSMCFECGKAYGESLEDFNQDEGNSSQHDENI
LQKVTILEKPFAYECMEALDSESVFMARERAYMGEKPYDWGDSGPDFIQMSDFSTYPRSQMELK
PFECTQCGKSFCKKSKFIIHQRAHTGEKPYACSVCGKSFSQKGTLTVHRRSHLEEKPYKCNECG
KTFCQKLHLTQHQRTHSGEKPYECSECGKSFCQKTHLTLHQRNHSGERPYPCNECGKSFSRKSA
LNDHQRTHTGEKLYKCNECGKSYYRKSTLITHQRTHTGEKPYQCSECGKFFSRVSYLTIHYRSH
LEEKPYECTECGKTFNLNSAFIRHWKVHAEERVQECGECGKPSPLQCAPDHTGDLGEKRYECNE
CGKTFLDSSAFHRHQSVPEGEKTYECNICGKSFSDSSCYTVHYRGHSEEKPFGCSECGKTFSHN
SSLFRHQRVHTGEKPYECYECGKFFSQKSYLTIHHRIHSGEKPYECSKCGKVFSRMSNLTVHYR
SHSGEKPYECNECGKVFSQKSYLTVHYRTHSGEKPYECNECGKKFHHRSAFNSHQRIHKRGTVN
VLTVEKL

hide sequence

RefSeq Acc Id:

NP_001038947 ⟸ NM_001045482

- UniProtKB:

Q6PB38 (UniProtKB/Swiss-Prot), Q9JKU4 (UniProtKB/Swiss-Prot), Q8BQC8 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSRSKGPLSFKDVAVAFSQEEWQQLDPEERTTYRDVMLETYSNLVSVGYDVTKPNMIIKLEQGE
EPWTVEGDRHAQRHLEISKVYDPREGIEEIGEKHLQCDDDPYCWRAEKGAAFDEAYTLETALIS
PSSGAHSCVSCGETLESVSELISSDGSYALEKPSMCFECGKAYGESLEDFNQDEGNSSQHDENI
LQKVTILEKPFAYECMEALDSESVFMARERAYMGEKPYDWGDSGPDFIQMSDFSTYPRSQMELK
PFECTQCGKSFCKKSKFIIHQRAHTGEKPYACSVCGKSFSQKGTLTVHRRSHLEEKPYKCNECG
KTFCQKLHLTQHQRTHSGEKPYECSECGKSFCQKTHLTLHQRNHSGERPYPCNECGKSFSRKSA
LNDHQRTHTGEKLYKCNECGKSYYRKSTLITHQRTHTGEKPYQCSECGKFFSRVSYLTIHYRSH
LEEKPYECTECGKTFNLNSAFIRHWKVHAEERVQECGECGKPSPLQCAPDHTGDLGEKRYECNE
CGKTFLDSSAFHRHQSVPEGEKTYECNICGKSFSDSSCYTVHYRGHSEEKPFGCSECGKTFSHN
SSLFRHQRVHTGEKPYECYECGKFFSQKSYLTIHHRIHSGEKPYECSKCGKVFSRMSNLTVHYR
SHSGEKPYECNECGKVFSQKSYLTVHYRTHSGEKPYECNECGKKFHHRSAFNSHQRIHKRGTVN
VLTVEKL

hide sequence

RefSeq Acc Id:	NP_001346164 ⟸ NM_001359235
- UniProtKB:	Q8BQC8 (UniProtKB/Swiss-Prot), Q6PB38 (UniProtKB/Swiss-Prot), Q9JKU4 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:

ENSMUSP00000128731 ⟸ ENSMUST00000165318

RefSeq Acc Id:

ENSMUSP00000059273 ⟸ ENSMUST00000049861

Protein Domains

KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8BQC8-F1-model_v2	AlphaFold	Q8BQC8	1-711	view protein structure

Promoters

RGD ID:

6888654

Promoter ID:

EPDNEW_M7778

Type:

initiation region

Name:

Rbak_1

Description:

Mus musculus RB-associated KRAB zinc finger , transcript variant2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	143,180,758 - 143,180,818	EPDNEW

RGD ID:

6836915

Promoter ID:

MM_KWN:44725

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000049861, NM_021326, OTTMUST00000075344, OTTMUST00000075345

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	5	143,942,326 - 143,942,826 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1927369	AgrOrtholog
Ensembl Genes	ENSMUSG00000061898	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000049861	ENTREZGENE
	ENSMUST00000049861.11	UniProtKB/Swiss-Prot
	ENSMUST00000165318	ENTREZGENE
	ENSMUST00000165318.4	UniProtKB/Swiss-Prot
Gene3D-CATH	6.10.140.140	UniProtKB/Swiss-Prot
	Classic Zinc Finger	UniProtKB/Swiss-Prot
InterPro	KRAB	UniProtKB/Swiss-Prot
	KRAB_dom_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
KEGG Report	mmu:57782	UniProtKB/Swiss-Prot
MGD	MGI:1927369	ENTREZGENE
NCBI Gene	57782	ENTREZGENE
PANTHER	KRAB DOMAIN C2H2 ZINC FINGER	UniProtKB/Swiss-Prot
	KRAB DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
Pfam	KRAB	UniProtKB/Swiss-Prot
	zf-C2H2	UniProtKB/Swiss-Prot
PhenoGen	Rbak	PhenoGen
PROSITE	KRAB	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot
SMART	KRAB	UniProtKB/Swiss-Prot
	ZnF_C2H2	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF109640	UniProtKB/Swiss-Prot
	SSF57667	UniProtKB/Swiss-Prot
UniProt	Q6PB38	ENTREZGENE
	Q8BQC8	ENTREZGENE
	Q9JKU4	ENTREZGENE
	RBAK_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q6PB38	UniProtKB/Swiss-Prot
	Q9JKU4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-05-12	Rbak	RB-associated KRAB zinc finger		RB-associated KRAB repressor	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar