Gm14403 (predicted gene 14403) - Rat Genome Database

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Gene: Gm14403 (predicted gene 14403) Mus musculus
Analyze
No known orthologs.
Symbol: Gm14403
Name: predicted gene 14403
RGD ID: 1618714
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392177,189,999 - 177,204,104 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2177,190,008 - 177,201,264 (+)EnsemblGRCm39 Ensembl
GRCm382177,498,226 - 177,512,311 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2177,498,215 - 177,509,763 (+)EnsemblGRCm38mm10GRCm38
MGSCv372177,282,931 - 177,297,016 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362177,477,634 - 177,491,719 (+)NCBIMGSCv36mm8
Cytogenetic Map2H4NCBI
cM Map299.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14610273   PMID:15618518   PMID:18799693   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:95
Interacting mature miRNAs:95
Transcripts:ENSMUST00000108940, ENSMUST00000108947, ENSMUST00000142549
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000108940   ⟹   ENSMUSP00000104568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2177,200,363 - 177,201,556 (+)Ensembl
GRCm38.p6 Ensembl2177,508,570 - 177,509,763 (+)Ensembl
Ensembl Acc Id: ENSMUST00000108947   ⟹   ENSMUSP00000104575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2177,190,108 - 177,201,264 (+)Ensembl
GRCm38.p6 Ensembl2177,498,315 - 177,509,471 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2177,190,008 - 177,200,662 (+)Ensembl
GRCm38.p6 Ensembl2177,498,215 - 177,508,869 (+)Ensembl
RefSeq Acc Id: NR_036450
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392177,189,999 - 177,204,104 (+)NCBI
GRCm382177,498,226 - 177,512,311 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein AAH25828 (Get FASTA)   NCBI Sequence Viewer  
  AAH98094 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000104575.3
Ensembl Acc Id: ENSMUSP00000104568   ⟸   ENSMUST00000108940
Ensembl Acc Id: ENSMUSP00000104575   ⟸   ENSMUST00000108947
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2BFU4-F1-model_v2 AlphaFold A2BFU4 1-402 view protein structure

Promoters
RGD ID:6832034
Promoter ID:MM_KWN:33453
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   ES_Cell
Transcripts:BC098094_GM14403,   ENSMUST00000108947,   OTTMUST00000040077,   UC008OHB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362177,282,796 - 177,283,296 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3649813 AgrOrtholog
Ensembl Genes ENSMUSG00000094786 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000108947.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Zinc_finger UniProtKB/TrEMBL
  ZNF781 UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
MGD MGI:3649813 ENTREZGENE
NCBI Gene 433520 ENTREZGENE
PANTHER PLURIPOTENCY-ASSOCIATED TRANSCRIPT 25-RELATED UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  PTHR14947 UniProtKB/TrEMBL
  RIKEN CDNA D130040H23 GENE UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 936 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Gm14403 PhenoGen
PRINTS ZINCFINGER UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RNAcentral URS0001BBE595 RNACentral
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A2BFU4_MOUSE UniProtKB/TrEMBL
  Q4V784_MOUSE UniProtKB/TrEMBL
  Q8R118_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm14403  predicted gene 14403  OTTMUSG00000016571  predicted gene, OTTMUSG00000016571  Symbol and/or name change 5135510 APPROVED