Zfp709 (zinc finger protein 709) - Rat Genome Database
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Gene: Zfp709 (zinc finger protein 709) Mus musculus
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Symbol: Zfp709
Name: zinc finger protein 709
RGD ID: 1332472
MGI Page MGI
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in cellular response to heat; cellular response to lipopolysaccharide; and negative regulation of transcription by RNA polymerase II. Predicted to localize to nuclear chromatin and plasma membrane. Is expressed in bladder; ureter; and urethra of female; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BC021921; GIOT; GIOT-4; HIT-40; MGC28841
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18209  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,635,912 - 72,646,409 (+)NCBIGRCm39mm39
GRCm38871,882,068 - 71,892,565 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,882,019 - 71,895,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,405,967 - 74,416,464 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,811,057 - 74,821,553 (+)NCBImm8
Celera876,238,516 - 76,249,013 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15618518   PMID:16141072   PMID:16141073   PMID:17015433   PMID:18287559  
PMID:20059953   PMID:21873635  


Genomics

Comparative Map Data
Zfp709
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,635,912 - 72,646,409 (+)NCBIGRCm39mm39
GRCm38871,882,068 - 71,892,565 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,882,019 - 71,895,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,405,967 - 74,416,464 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,811,057 - 74,821,553 (+)NCBImm8
Celera876,238,516 - 76,249,013 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
ZNF443
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1912,429,706 - 12,441,021 (-)EnsemblGRCh38hg38GRCh38
GRCh381912,429,706 - 12,441,021 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371912,537,710 - 12,551,926 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,401,520 - 12,412,823 (-)NCBINCBI36hg18NCBI36
Build 341912,401,520 - 12,412,819NCBI
Celera1912,434,353 - 12,445,750 (-)NCBI
Cytogenetic Map19p13.2NCBI
HuRef1912,114,067 - 12,125,478 (-)NCBIHuRef
CHM1_11912,540,734 - 12,552,129 (-)NCBICHM1_1
Zfp709
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01619,632,954 - 19,643,956 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,634,134 - 19,643,236 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,490,577 - 19,501,296 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,397,910 - 18,407,047 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,397,907 - 18,407,045 (-)NCBI
Celera1618,117,897 - 18,127,032 (-)NCBICelera
Cytogenetic Map16p14NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:115
Interacting mature miRNAs:119
Transcripts:ENSMUST00000034259
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000034259   ⟹   ENSMUSP00000034259
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,887,264 - 71,890,912 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188374   ⟹   ENSMUSP00000141000
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,882,081 - 71,888,062 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188685   ⟹   ENSMUSP00000140285
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,882,019 - 71,895,727 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203585
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,882,367 - 71,887,352 (+)Ensembl
RefSeq Acc Id: NM_145624   ⟹   NP_663599
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,635,912 - 72,646,409 (+)NCBI
GRCm38871,882,068 - 71,892,565 (+)ENTREZGENE
MGSCv37874,405,967 - 74,416,464 (+)RGD
Celera876,238,516 - 76,249,013 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_663599 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH21921 (Get FASTA)   NCBI Sequence Viewer  
  BAC27336 (Get FASTA)   NCBI Sequence Viewer  
  BAE40245 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_663599   ⟸   NM_145624
- UniProtKB: Q8C0I0 (UniProtKB/TrEMBL),   Q8VC29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034259   ⟸   ENSMUST00000034259
RefSeq Acc Id: ENSMUSP00000141000   ⟸   ENSMUST00000188374
RefSeq Acc Id: ENSMUSP00000140285   ⟸   ENSMUST00000188685
Protein Domains
C2H2-type   KRAB

Promoters
RGD ID:8667441
Promoter ID:EPDNEW_M11751
Type:initiation region
Name:Zfp709_1
Description:Mus musculus zinc finger protein 709 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,882,068 - 71,882,128EPDNEW
RGD ID:6843916
Promoter ID:MM_KWN:54833
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_145624
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,405,631 - 74,406,131 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384299 AgrOrtholog
Ensembl Genes ENSMUSG00000056019 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034259 UniProtKB/TrEMBL
  ENSMUSP00000140285 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000141000 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034259 UniProtKB/TrEMBL
  ENSMUST00000188374 UniProtKB/TrEMBL
  ENSMUST00000188685 ENTREZGENE, UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  PRDM1 UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:236193 UniProtKB/TrEMBL
MGD MGI:2384299 ENTREZGENE
NCBI Gene 236193 ENTREZGENE
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp709 PhenoGen
PIRSF PRDM1 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniGene Mm.290790 ENTREZGENE
UniProt F6R4Z5_MOUSE UniProtKB/TrEMBL
  Q3THF1_MOUSE UniProtKB/TrEMBL
  Q8C0I0 ENTREZGENE, UniProtKB/TrEMBL
  Q8VC29 ENTREZGENE, UniProtKB/TrEMBL