Zfp1004 (zinc finger protein 1004) - Rat Genome Database

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Gene: Zfp1004 (zinc finger protein 1004) Mus musculus
Analyze
No known orthologs.
Symbol: Zfp1004
Name: zinc finger protein 1004
RGD ID: 2306254
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to several human genes including ZNF320 (zinc finger protein 320); ZNF415 (zinc finger protein 415); and ZNF528 (zinc finger protein 528).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gm14139; zinc finger protein RP23-11F9.3-001
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392150,023,675 - 150,035,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2150,023,675 - 150,035,199 (+)EnsemblGRCm39 Ensembl
GRCm382150,181,755 - 150,193,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2150,181,755 - 150,193,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv372150,007,491 - 150,019,015 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera2151,425,970 - 151,437,494 (+)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp1004Mouseregulation of transcription by RNA polymerase II involved_inIBAPANTHER:PTN001225435 more ...2290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp1004Mousenucleus is_active_inIBAPANTHER:PTN001225435 more ...2290270 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfp1004MouseDNA-binding transcription factor activity, RNA polymerase II-specific enablesIBAPANTHER:PTN001225435 more ...2290270 GO_CentralGO_REF:0000033
Zfp1004MouseRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIBAPANTHER:PTN001225435 and MGI:19167542290270 GO_CentralGO_REF:0000033


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:14610273   PMID:16141072   PMID:18799693   PMID:21873635  



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Variants in Zfp1004
495 total Variants

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:30
Interacting mature miRNAs:30
Transcripts:ENSMUST00000109926, ENSMUST00000109929
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse

1 to 10 of 44 rows





RefSeq Transcripts NM_001145863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL831742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000109926   ⟹   ENSMUSP00000105552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2150,023,675 - 150,035,199 (+)Ensembl
GRCm38.p6 Ensembl2150,181,755 - 150,193,279 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109929   ⟹   ENSMUSP00000105555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2150,032,313 - 150,035,072 (+)Ensembl
GRCm38.p6 Ensembl2150,190,393 - 150,193,152 (+)Ensembl
RefSeq Acc Id: NM_001145863   ⟹   NP_001139335
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392150,023,675 - 150,035,199 (+)NCBI
GRCm382150,181,755 - 150,193,279 (+)ENTREZGENE
MGSCv372150,007,491 - 150,019,015 (+)RGD
Celera2151,425,970 - 151,437,494 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Protein RefSeqs NP_001139335 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000105552
  ENSMUSP00000105552.2
  ENSMUSP00000105555.3
RefSeq Acc Id: NP_001139335   ⟸   NM_001145863
- Sequence:
Ensembl Acc Id: ENSMUSP00000105555   ⟸   ENSMUST00000109929
Ensembl Acc Id: ENSMUSP00000105552   ⟸   ENSMUST00000109926
C2H2-type   KRAB

Name Modeler Protein Id AA Range Protein Structure
AF-F6ZS36-F1-model_v2 AlphaFold F6ZS36 1-494 view protein structure

RGD ID:6879090
Promoter ID:EPDNEW_M2996
Type:initiation region
Name:Gm14139_1
Description:Mus musculus predicted gene 14139 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382150,181,759 - 150,181,819EPDNEW


1 to 29 of 29 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000079009 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000109926 ENTREZGENE
  ENSMUST00000109926.8 UniProtKB/TrEMBL
  ENSMUST00000109929.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
MGD MGI:3836251 ENTREZGENE
NCBI Gene 100271882 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 544-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PhenoGen Zfp1004 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A2ANU6_MOUSE UniProtKB/TrEMBL
  F6ZS36_MOUSE UniProtKB/TrEMBL
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-08 Zfp1004  zinc finger protein 1004  Gm14139  predicted gene 14139  Symbol and/or name updated 27372883 PROVISIONAL