Zfp934 (zinc finger protein 934) - Rat Genome Database

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Gene: Zfp934 (zinc finger protein 934) Mus musculus
Analyze
No known orthologs.
Symbol: Zfp934
Name: zinc finger protein 934
RGD ID: 1620721
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in limb mesenchyme.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6720457D02Rik; hypothetical protein LOC77117; zinc finger protein 782
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391362,664,609 - 62,727,170 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1362,627,641 - 62,719,013 (-)EnsemblGRCm39 Ensembl
GRCm381362,516,795 - 62,579,321 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1362,479,827 - 62,571,199 (-)EnsemblGRCm38mm10GRCm38
MGSCv371362,618,157 - 62,659,959 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361362,526,420 - 62,568,222 (-)NCBIMGSCv36mm8
Celera1364,187,740 - 64,204,902 (-)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1332.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:12477932   PMID:15618518   PMID:16141072   PMID:16141073   PMID:17967808   PMID:20059953  
PMID:21267068   PMID:21873635  


Genomics

Variants

.
Variants in Zfp934
2058 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:52
Interacting mature miRNAs:53
Transcripts:ENSMUST00000082203, ENSMUST00000101547
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001162911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY719365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT030240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000082203   ⟹   ENSMUSP00000080837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,665,314 - 62,668,265 (-)Ensembl
GRCm38.p6 Ensembl1362,517,500 - 62,520,451 (-)Ensembl
RefSeq Acc Id: ENSMUST00000101547   ⟹   ENSMUSP00000099083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,664,611 - 62,706,325 (-)Ensembl
GRCm38.p6 Ensembl1362,516,797 - 62,558,511 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220648   ⟹   ENSMUSP00000152492
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,664,611 - 62,706,413 (-)Ensembl
GRCm38.p6 Ensembl1362,516,797 - 62,558,599 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221250   ⟹   ENSMUSP00000152631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,627,641 - 62,706,449 (-)Ensembl
GRCm38.p6 Ensembl1362,479,827 - 62,558,635 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,700,057 - 62,719,013 (-)Ensembl
GRCm38.p6 Ensembl1362,552,243 - 62,571,199 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,700,057 - 62,706,443 (-)Ensembl
GRCm38.p6 Ensembl1362,552,243 - 62,558,629 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221494
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,634,460 - 62,706,426 (-)Ensembl
GRCm38.p6 Ensembl1362,486,646 - 62,558,612 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222429   ⟹   ENSMUSP00000152461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,634,460 - 62,706,421 (-)Ensembl
GRCm38.p6 Ensembl1362,486,646 - 62,558,607 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222746   ⟹   ENSMUSP00000152804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,664,609 - 62,706,443 (-)Ensembl
GRCm38.p6 Ensembl1362,516,795 - 62,558,629 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222852   ⟹   ENSMUSP00000152181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1362,666,376 - 62,706,409 (-)Ensembl
GRCm38.p6 Ensembl1362,518,562 - 62,558,595 (-)Ensembl
RefSeq Acc Id: NM_001162911   ⟹   NP_001156383
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391362,664,609 - 62,706,443 (-)NCBI
GRCm381362,516,795 - 62,558,629 (-)NCBI
MGSCv371362,618,157 - 62,659,959 (-)RGD
Celera1364,187,740 - 64,205,713 (-)NCBI
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001360915   ⟹   NP_001347844
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391362,664,609 - 62,706,443 (-)NCBI
GRCm381362,516,795 - 62,558,629 (-)NCBI
Sequence:
RefSeq Acc Id: NM_175252   ⟹   NP_780461
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391362,664,609 - 62,706,443 (-)NCBI
GRCm381362,516,795 - 62,558,629 (-)NCBI
MGSCv371362,618,157 - 62,659,959 (-)RGD
Celera1364,187,740 - 64,205,713 (-)NCBI
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017315637   ⟹   XP_017171126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391362,664,609 - 62,727,170 (-)NCBI
GRCm381362,516,795 - 62,579,321 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247463   ⟹   XP_030103323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391362,664,609 - 62,670,384 (-)NCBI
GRCm381362,516,795 - 62,522,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247464   ⟹   XP_030103324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391362,664,609 - 62,711,325 (-)NCBI
GRCm381362,516,795 - 62,563,511 (-)NCBI
Sequence:
RefSeq Acc Id: NP_780461   ⟸   NM_175252
- Peptide Label: isoform 2
- UniProtKB: A0A1Y7VJM8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001156383   ⟸   NM_001162911
- Peptide Label: isoform 1
- UniProtKB: K7N6H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017171126   ⟸   XM_017315637
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030103324   ⟸   XM_030247464
- Peptide Label: isoform X3
- UniProtKB: A0A1Y7VJM8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347844   ⟸   NM_001360915
- Peptide Label: isoform 3
- UniProtKB: A0A1Y7VKB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030103323   ⟸   XM_030247463
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000152181   ⟸   ENSMUST00000222852
RefSeq Acc Id: ENSMUSP00000152804   ⟸   ENSMUST00000222746
RefSeq Acc Id: ENSMUSP00000152461   ⟸   ENSMUST00000222429
RefSeq Acc Id: ENSMUSP00000099083   ⟸   ENSMUST00000101547
RefSeq Acc Id: ENSMUSP00000152631   ⟸   ENSMUST00000221250
RefSeq Acc Id: ENSMUSP00000152492   ⟸   ENSMUST00000220648
RefSeq Acc Id: ENSMUSP00000080837   ⟸   ENSMUST00000082203
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-K7N6H3-F1-model_v2 AlphaFold K7N6H3 1-473 view protein structure

Promoters
RGD ID:6823901
Promoter ID:MM_KWN:14416
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000082203,   NM_001162911,   NM_175252,   UC007QWX.1,   UC007QWY.1,   UC007QXA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361362,659,836 - 62,660,336 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924367 AgrOrtholog
Ensembl Genes ENSMUSG00000074865 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000101547 ENTREZGENE
  ENSMUST00000101547.12 UniProtKB/TrEMBL
  ENSMUST00000220648 ENTREZGENE
  ENSMUST00000220648.2 UniProtKB/TrEMBL
  ENSMUST00000221250.2 UniProtKB/TrEMBL
  ENSMUST00000222429.2 UniProtKB/TrEMBL
  ENSMUST00000222746 ENTREZGENE
  ENSMUST00000222746.2 UniProtKB/TrEMBL
  ENSMUST00000222852.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  ZNF781 UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:77117 UniProtKB/TrEMBL
MGD MGI:1924367 ENTREZGENE
NCBI Gene 77117 ENTREZGENE
PANTHER GENE 3055-RELATED UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  NOVEL KRAB BOX AND ZINC FINGER, C2H2 TYPE DOMAIN CONTAINING PROTEIN-RELATED UniProtKB/TrEMBL
  PTHR14947 UniProtKB/TrEMBL
  RIKEN CDNA 6720489N17 GENE-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 281-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 747 UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Zfp934 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A1Y7VJM8 ENTREZGENE, UniProtKB/TrEMBL
  A0A1Y7VKB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A1Y7VM11_MOUSE UniProtKB/TrEMBL
  A0A1Y7VMB8_MOUSE UniProtKB/TrEMBL
  A0A1Y7VN06_MOUSE UniProtKB/TrEMBL
  A4QPE7_MOUSE UniProtKB/TrEMBL
  K7N6H3 ENTREZGENE, UniProtKB/TrEMBL
  Q8BSR1_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Zfp934  zinc finger protein 934  6720457D02Rik  RIKEN cDNA 6720457D02 gene  Symbol and/or name change 5135510 APPROVED