Gm2004 (predicted gene 2004) - Rat Genome Database

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Gene: Gm2004 (predicted gene 2004) Mus musculus
Analyze
No known orthologs.
Symbol: Gm2004
Name: predicted gene 2004
RGD ID: 2302481
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 100039000; ENSMUSG00000078893; uncharacterized protein LOC628147; zinc finger protein 709-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392175,873,883 - 175,895,229 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2175,883,080 - 175,895,248 (-)EnsemblGRCm39 Ensembl
GRCm382176,138,720 - 176,153,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2176,141,591 - 176,149,825 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2177,000,956 - 177,012,787 (+)EnsemblGRCm38mm10GRCm38
MGSCv372175,541,345 - 175,553,266 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362176,408,430 - 176,432,402 (-)NCBIMGSCv36mm8
Cytogenetic Map2H4NCBI
cM Map298.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:83
Interacting mature miRNAs:84
Transcripts:ENSMUST00000109049, ENSMUST00000178872, ENSMUST00000179349
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000109049   ⟹   ENSMUSP00000104677
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,883,080 - 175,895,248 (-)Ensembl
GRCm38.p6 Ensembl2176,141,591 - 176,149,825 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118012   ⟹   ENSMUSP00000113133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,490,405 - 176,500,411 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132883   ⟹   ENSMUSP00000119262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,494,026 - 176,503,016 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178872   ⟹   ENSMUSP00000135992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,885,149 - 175,895,215 (-)Ensembl
GRCm38.p6 Ensembl2176,144,300 - 176,144,697 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179349   ⟹   ENSMUSP00000136346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,885,053 - 175,895,236 (-)Ensembl
GRCm38.p6 Ensembl2176,144,300 - 176,149,825 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179435   ⟹   ENSMUSP00000136320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,499,155 - 176,499,552 (+)Ensembl
RefSeq Acc Id: ENSMUST00000249361   ⟹   ENSMUSP00000159719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,885,631 - 175,892,095 (-)Ensembl
RefSeq Acc Id: NM_001362250   ⟹   NP_001349179
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,885,147 - 175,895,222 (-)NCBI
GRCm382176,143,356 - 176,153,422 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001408189   ⟹   NP_001395118
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,885,147 - 175,895,222 (-)NCBI
RefSeq Acc Id: NM_001408190   ⟹   NP_001395119
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,880,597 - 175,895,222 (-)NCBI
RefSeq Acc Id: NM_001408191   ⟹   NP_001395120
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,880,597 - 175,895,222 (-)NCBI
RefSeq Acc Id: NM_001408192   ⟹   NP_001395121
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,873,883 - 175,895,222 (-)NCBI
RefSeq Acc Id: NM_001408193   ⟹   NP_001395122
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,873,883 - 175,895,222 (-)NCBI
RefSeq Acc Id: NM_001408194   ⟹   NP_001395123
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,880,597 - 175,895,222 (-)NCBI
RefSeq Acc Id: NM_001408195   ⟹   NP_001395124
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,880,597 - 175,895,222 (-)NCBI
RefSeq Acc Id: NM_001408196   ⟹   NP_001395125
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,873,883 - 175,895,222 (-)NCBI
RefSeq Acc Id: NM_001408197   ⟹   NP_001395126
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,873,883 - 175,895,222 (-)NCBI
RefSeq Acc Id: NM_001408198   ⟹   NP_001395127
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,885,147 - 175,895,229 (-)NCBI
RefSeq Acc Id: NM_001408199   ⟹   NP_001395128
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,885,147 - 175,895,222 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001349179   ⟸   NM_001362250
- Peptide Label: isoform 1
- UniProtKB: E9Q9K2 (UniProtKB/TrEMBL),   J3KMS2 (UniProtKB/TrEMBL),   Q8C1K5 (UniProtKB/TrEMBL),   Q8CFP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000135992   ⟸   ENSMUST00000178872
RefSeq Acc Id: ENSMUSP00000136346   ⟸   ENSMUST00000179349
RefSeq Acc Id: ENSMUSP00000104677   ⟸   ENSMUST00000109049
RefSeq Acc Id: ENSMUSP00000136320   ⟸   ENSMUST00000179435
RefSeq Acc Id: ENSMUSP00000119262   ⟸   ENSMUST00000132883
RefSeq Acc Id: ENSMUSP00000113133   ⟸   ENSMUST00000118012
RefSeq Acc Id: NP_001395122   ⟸   NM_001408193
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001395125   ⟸   NM_001408196
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001395126   ⟸   NM_001408197
- Peptide Label: isoform 9
- UniProtKB: A2BE16 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395121   ⟸   NM_001408192
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001395120   ⟸   NM_001408191
- Peptide Label: isoform 2
- UniProtKB: A2ARL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395124   ⟸   NM_001408195
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001395123   ⟸   NM_001408194
- Peptide Label: isoform 6
- UniProtKB: G3UZB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395119   ⟸   NM_001408190
- Peptide Label: isoform 2
- UniProtKB: A2ARL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395127   ⟸   NM_001408198
- Peptide Label: isoform 10
- UniProtKB: A2BG90 (UniProtKB/TrEMBL),   J3KMS2 (UniProtKB/TrEMBL),   Q8C1K5 (UniProtKB/TrEMBL),   Q8CFP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395118   ⟸   NM_001408189
- Peptide Label: isoform 1
- UniProtKB: E9Q9K2 (UniProtKB/TrEMBL),   J3KMS2 (UniProtKB/TrEMBL),   Q8C1K5 (UniProtKB/TrEMBL),   Q8CFP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395128   ⟸   NM_001408199
- Peptide Label: isoform 10
- UniProtKB: A2BG90 (UniProtKB/TrEMBL),   J3KMS2 (UniProtKB/TrEMBL),   Q8C1K5 (UniProtKB/TrEMBL),   Q8CFP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000159719   ⟸   ENSMUST00000249361
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000078875 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000078877 Ensembl
  ENSMUSG00000095648 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000108975.9 UniProtKB/TrEMBL
  ENSMUST00000109049 ENTREZGENE
  ENSMUST00000109049.11 UniProtKB/TrEMBL
  ENSMUST00000126358.9 UniProtKB/TrEMBL
  ENSMUST00000178872 ENTREZGENE
  ENSMUST00000178872.4 UniProtKB/TrEMBL
  ENSMUST00000179349 ENTREZGENE
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
MGD MGI:3780174 ENTREZGENE
NCBI Gene 628147 ENTREZGENE
PANTHER IP01015P-RELATED UniProtKB/TrEMBL
  OTTMUSG00000016588 PROTEIN-RELATED UniProtKB/TrEMBL
  RIKEN CDNA 3300002I08 GENE-RELATED UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Gm2004 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A2ARL5 ENTREZGENE, UniProtKB/TrEMBL
  A2BE16 ENTREZGENE, UniProtKB/TrEMBL
  A2BG90 ENTREZGENE
  E9Q9K2 ENTREZGENE
  G3UZB7 ENTREZGENE
  J3KMS2 ENTREZGENE, UniProtKB/TrEMBL
  Q8C1K5 ENTREZGENE
  Q8CFP2 ENTREZGENE
UniProt Secondary E9Q9K2 UniProtKB/TrEMBL