Zfp616 (zinc finger protein 616) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Zfp616 (zinc finger protein 616) Mus musculus
Analyze
No known orthologs.
Symbol: Zfp616
Name: zinc finger protein 616
RGD ID: 1621230
MGI Page MGI
Description: ENCODES a protein that exhibits transcription regulatory region sequence-specific DNA binding (ortholog); INTERACTS WITH troglitazone
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Gm12330; KRAB box containing protein; novel KRAB box containing protein; RP23-221M24.3
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,951,723 - 73,978,127 (+)NCBIGRCm39mm39
GRCm39 Ensembl1173,960,781 - 73,978,118 (+)Ensembl
GRCm381174,060,897 - 74,087,301 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,069,955 - 74,087,292 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,874,399 - 73,900,803 (+)NCBIGRCm37mm9NCBIm37
MGSCv361174,660,381 - 74,686,992 (+)NCBImm8
MGSCv361173,877,092 - 73,903,492 (+)NCBImm8
Celera1181,603,734 - 81,620,687 (+)NCBICelera
Cytogenetic Map11B4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
troglitazone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21267068   PMID:21677750   PMID:21873635   PMID:27626380  


Genomics

Position Markers
Olfr399  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,053,976 - 74,054,524UniSTSGRCm38
Celera1181,587,364 - 81,587,912UniSTS
Cytogenetic Map11B4UniSTS
cM Map1145.73UniSTS
UniSTS:485204  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,906,552 - 73,907,490UniSTSGRCm38
MGSCv371173,720,054 - 73,720,992UniSTSGRCm37
Celera1181,438,296 - 81,439,234UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:485205  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,776,387 - 73,777,325UniSTSGRCm38
MGSCv371173,589,889 - 73,590,827UniSTSGRCm37
Celera1181,307,776 - 81,308,714UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:489326  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,786,940 - 73,787,875UniSTSGRCm38
MGSCv371173,600,442 - 73,601,377UniSTSGRCm37
Celera1181,315,435 - 81,316,370UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:489490  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,044,325 - 74,045,272UniSTSGRCm38
MGSCv371173,857,827 - 73,858,774UniSTSGRCm37
Celera1181,577,694 - 81,578,641UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:489491  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,887,438 - 73,888,370UniSTSGRCm38
MGSCv371173,700,940 - 73,701,872UniSTSGRCm37
Celera1181,419,003 - 81,419,935UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:491694  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,983,572 - 73,984,626UniSTSGRCm38
MGSCv371173,797,074 - 73,798,128UniSTSGRCm37
Celera1181,517,025 - 81,518,079UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:491761  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,053,776 - 74,054,778UniSTSGRCm38
MGSCv371173,867,278 - 73,868,280UniSTSGRCm37
Celera1181,587,164 - 81,588,166UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:492725  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,847,085 - 73,848,151UniSTSGRCm38
MGSCv371173,660,587 - 73,661,653UniSTSGRCm37
Celera1181,379,737 - 81,380,803UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:494373  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,887,340 - 73,888,405UniSTSGRCm38
MGSCv371173,700,842 - 73,701,907UniSTSGRCm37
Celera1181,418,905 - 81,419,970UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:494973  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,814,047 - 73,815,139UniSTSGRCm38
MGSCv371173,627,549 - 73,628,641UniSTSGRCm37
Celera1181,342,572 - 81,343,664UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:495339  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,964,530 - 73,965,620UniSTSGRCm38
MGSCv371173,778,032 - 73,779,122UniSTSGRCm37
Celera1181,497,983 - 81,499,073UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:495591  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,786,842 - 73,787,963UniSTSGRCm38
MGSCv371173,600,344 - 73,601,465UniSTSGRCm37
Celera1181,315,337 - 81,316,458UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:495660  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,906,469 - 73,907,584UniSTSGRCm38
MGSCv371173,719,971 - 73,721,086UniSTSGRCm37
Celera1181,438,213 - 81,439,328UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:495661  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,776,289 - 73,777,390UniSTSGRCm38
MGSCv371173,589,791 - 73,590,892UniSTSGRCm37
Celera1181,307,678 - 81,308,779UniSTS
Cytogenetic Map11B4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1205
Count of miRNA genes:506
Interacting mature miRNAs:568
Transcripts:ENSMUST00000074813, ENSMUST00000108463, ENSMUST00000116546, ENSMUST00000137407, ENSMUST00000178159
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000074813   ⟹   ENSMUSP00000074365
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,069,955 - 74,087,292 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108463   ⟹   ENSMUSP00000104103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,069,955 - 74,084,090 (+)Ensembl
RefSeq Acc Id: ENSMUST00000116546   ⟹   ENSMUSP00000112245
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,070,185 - 74,083,039 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137407
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,070,165 - 74,083,311 (+)Ensembl
RefSeq Acc Id: ENSMUST00000178159   ⟹   ENSMUSP00000136549
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,082,907 - 74,085,870 (+)Ensembl
RefSeq Acc Id: NM_001177570   ⟹   NP_001171041
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,951,723 - 73,978,127 (+)NCBI
GRCm381174,060,897 - 74,087,301 (+)ENTREZGENE
MGSCv371173,874,399 - 73,900,803 (+)RGD
Celera1181,603,734 - 81,620,687 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001171041 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001171041   ⟸   NM_001177570
- UniProtKB: J3QN14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136549   ⟸   ENSMUST00000178159
RefSeq Acc Id: ENSMUSP00000104103   ⟸   ENSMUST00000108463
RefSeq Acc Id: ENSMUSP00000074365   ⟸   ENSMUST00000074813
RefSeq Acc Id: ENSMUSP00000112245   ⟸   ENSMUST00000116546
Protein Domains
C2H2-type   KRAB

Promoters
RGD ID:8675598
Promoter ID:EPDNEW_M15777
Type:single initiation site
Name:Zfp616_1
Description:Mus musculus zinc finger protein 616 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381174,065,712 - 74,065,772EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000069476 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000074365 UniProtKB/TrEMBL
  ENSMUSP00000104103 UniProtKB/TrEMBL
  ENSMUSP00000112245 UniProtKB/TrEMBL
  ENSMUSP00000136549 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000074813 UniProtKB/TrEMBL
  ENSMUST00000108463 UniProtKB/TrEMBL
  ENSMUST00000116546 UniProtKB/TrEMBL
  ENSMUST00000178159 ENTREZGENE, UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:327963 UniProtKB/TrEMBL
MGD MGI:3650906 ENTREZGENE
NCBI Gene 327963 ENTREZGENE
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp616 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A7DTG8_MOUSE UniProtKB/TrEMBL
  J3QN14 ENTREZGENE, UniProtKB/TrEMBL
  Q5SVV3_MOUSE UniProtKB/TrEMBL