Gm2007 (predicted gene 2007) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gm2007 (predicted gene 2007) Mus musculus
Analyze
No known orthologs.
Symbol: Gm2007
Name: predicted gene 2007
RGD ID: 2307563
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 100039017; uncharacterized protein LOC102639653; zinc finger protein 14; zinc finger protein 431-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392175,529,632 - 175,552,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2175,529,708 - 175,543,212 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382175,737,837 - 175,754,980 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2175,965,331 - 175,980,303 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
GRCm38.p6 Ensembl2175,422,300 - 175,435,807 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
GRCm38.p6 Ensembl2176,473,278 - 176,486,783 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
GRCm38.p6 Ensembl2176,613,364 - 176,636,344 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
GRCm38.p6 Ensembl2175,321,955 - 175,338,197 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
GRCm38.p6 Ensembl2175,741,537 - 175,751,419 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
GRCm38.p6 Ensembl2175,643,978 - 175,653,860 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv372175,747,392 - 175,750,551 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362175,737,069 - 175,751,629 (+)NCBIMGSCv36mm8
Cytogenetic Map2H4NCBI
cM Map298.65NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm2007
4 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:82
Interacting mature miRNAs:84
Transcripts:ENSMUST00000177981, ENSMUST00000178133
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: NM_001378595   ⟹   NP_001365524
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,529,667 - 175,546,000 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252317   ⟹   XP_030108177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,529,658 - 175,552,690 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252318   ⟹   XP_030108178
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,529,647 - 175,552,690 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252319   ⟹   XP_030108179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,529,632 - 175,552,690 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157143   ⟹   XP_036013036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,529,659 - 175,552,690 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157148   ⟹   XP_036013041
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,529,647 - 175,552,690 (+)NCBI
Sequence:
RefSeq Acc Id: XP_030108179   ⟸   XM_030252319
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030108178   ⟸   XM_030252318
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036013041   ⟸   XM_036157148
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030108177   ⟸   XM_030252317
- Peptide Label: isoform X1
- UniProtKB: A2ART4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013036   ⟸   XM_036157143
- Peptide Label: isoform X1
- UniProtKB: A2ART4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365524   ⟸   NM_001378595
- UniProtKB: A2ART4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2ART4-F1-model_v2 AlphaFold A2ART4 1-498 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000078870 UniProtKB/TrEMBL
  ENSMUSG00000078878 UniProtKB/TrEMBL
  ENSMUSG00000078880 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000078881 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000078886 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000078897 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000078899 Ensembl
  ENSMUSG00000094475 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000094932 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000108964.3 UniProtKB/TrEMBL
  ENSMUST00000108980.9 UniProtKB/TrEMBL
  ENSMUST00000109007.8 UniProtKB/TrEMBL
  ENSMUST00000117267.2 UniProtKB/TrEMBL
  ENSMUST00000119149.8 UniProtKB/TrEMBL
  ENSMUST00000120521.2 UniProtKB/TrEMBL
  ENSMUST00000120959.8 UniProtKB/TrEMBL
  ENSMUST00000152941.2 UniProtKB/TrEMBL
  ENSMUST00000177700.9 UniProtKB/TrEMBL
  ENSMUST00000177981.9 UniProtKB/TrEMBL
  ENSMUST00000178133 ENTREZGENE
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2-type UniProtKB/TrEMBL
MGD MGI:3780177 ENTREZGENE
NCBI Gene Gm2007 ENTREZGENE
PANTHER RIKEN CDNA 6720489N17 GENE-RELATED UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
PhenoGen Gm2007 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
UniProt A2ART4 ENTREZGENE
  F7CK90_MOUSE UniProtKB/TrEMBL