Gm4724 (predicted gene 4724) - Rat Genome Database

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Gene: Gm4724 (predicted gene 4724) Mus musculus
Analyze
No known orthologs.
Symbol: Gm4724
Name: predicted gene 4724
RGD ID: 2302471
MGI Page MGI
Description: Orthologous to human ZNF136 (zinc finger protein 136) and ZNF333 (zinc finger protein 333).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 100043915; uncharacterized protein LOC100043915
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392175,254,562 - 175,397,990 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2175,264,093 - 175,277,600 (-)EnsemblGRCm39 Ensembl
GRCm382175,418,037 - 175,704,126 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2175,643,978 - 175,653,860 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2175,422,300 - 175,435,807 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2175,692,223 - 175,703,646 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2175,741,537 - 175,751,419 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2175,321,955 - 175,338,197 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2176,613,364 - 176,636,344 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2176,473,278 - 176,486,783 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2175,965,331 - 175,980,303 (+)EnsemblGRCm38mm10GRCm38
MGSCv372175,247,801 - 175,250,960 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362175,245,814 - 175,261,283 (-)NCBIMGSCv36mm8
Cytogenetic Map2H4NCBI
cM Map298.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm4724Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  



.

.
Variants in Gm4724
13 total Variants

Predicted Target Of
Summary Value
Count of predictions:285
Count of miRNA genes:189
Interacting mature miRNAs:194
Transcripts:ENSMUST00000109045, ENSMUST00000109046, ENSMUST00000152941, ENSMUST00000153210
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse

1 to 10 of 28 rows






Ensembl Acc Id: ENSMUST00000108990   ⟹   ENSMUSP00000104618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,314,635 - 176,328,111 (-)Ensembl
GRCm38.p6 Ensembl2176,622,842 - 176,636,318 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109007   ⟹   ENSMUSP00000104635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,757,124 - 175,769,428 (+)Ensembl
GRCm38.p6 Ensembl2175,965,331 - 175,977,635 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109008   ⟹   ENSMUSP00000104636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,760,735 - 175,770,617 (+)Ensembl
GRCm38.p6 Ensembl2175,968,942 - 175,978,824 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109027   ⟹   ENSMUSP00000104655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,484,016 - 175,495,439 (-)Ensembl
GRCm38.p6 Ensembl2175,692,223 - 175,703,646 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109045   ⟹   ENSMUSP00000104673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,264,093 - 175,277,600 (-)Ensembl
GRCm38.p6 Ensembl2175,422,300 - 175,435,807 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109046   ⟹   ENSMUSP00000104674
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,264,093 - 175,273,975 (-)Ensembl
GRCm38.p6 Ensembl2175,422,300 - 175,432,182 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109050   ⟹   ENSMUSP00000104678
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,166,536 - 175,169,391 (-)Ensembl
GRCm38.p6 Ensembl2175,324,743 - 175,327,598 (-)Ensembl
Ensembl Acc Id: ENSMUST00000117267   ⟹   ENSMUSP00000112702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,316,641 - 176,328,137 (-)Ensembl
GRCm38.p6 Ensembl2176,624,848 - 176,636,344 (-)Ensembl
Ensembl Acc Id: ENSMUST00000119149   ⟹   ENSMUSP00000113990
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,315,987 - 176,328,136 (-)Ensembl
GRCm38.p6 Ensembl2176,624,194 - 176,636,343 (-)Ensembl
Ensembl Acc Id: ENSMUST00000120521   ⟹   ENSMUSP00000113254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,167,304 - 176,178,576 (-)Ensembl
GRCm38.p6 Ensembl2176,475,511 - 176,486,783 (-)Ensembl
Ensembl Acc Id: ENSMUST00000120959   ⟹   ENSMUSP00000113558
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,166,423 - 176,178,566 (-)Ensembl
GRCm38.p6 Ensembl2176,474,630 - 176,486,773 (-)Ensembl
Ensembl Acc Id: ENSMUST00000121393   ⟹   ENSMUSP00000113670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,163,748 - 175,179,990 (-)Ensembl
GRCm38.p6 Ensembl2175,321,955 - 175,338,197 (-)Ensembl
Ensembl Acc Id: ENSMUST00000122097   ⟹   ENSMUSP00000112478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,165,071 - 176,174,953 (-)Ensembl
GRCm38.p6 Ensembl2176,473,278 - 176,483,160 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,305,157 - 176,317,423 (-)Ensembl
GRCm38.p6 Ensembl2176,613,364 - 176,625,630 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131041   ⟹   ENSMUSP00000119079
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,487,109 - 175,495,439 (-)Ensembl
GRCm38.p6 Ensembl2175,695,316 - 175,703,646 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152941   ⟹   ENSMUSP00000121866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,265,686 - 175,277,575 (-)Ensembl
GRCm38.p6 Ensembl2175,423,893 - 175,435,782 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153210
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,266,190 - 175,277,593 (-)Ensembl
GRCm38.p6 Ensembl2175,424,397 - 175,435,800 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174416   ⟹   ENSMUSP00000134428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,757,172 - 175,772,096 (+)Ensembl
GRCm38.p6 Ensembl2175,965,379 - 175,980,303 (+)Ensembl
Ensembl Acc Id: ENSMUST00000177700   ⟹   ENSMUSP00000136514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,435,771 - 175,443,194 (+)Ensembl
GRCm38.p6 Ensembl2175,643,978 - 175,651,401 (+)Ensembl
Ensembl Acc Id: ENSMUST00000177981   ⟹   ENSMUSP00000136743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,533,330 - 175,540,753 (+)Ensembl
GRCm38.p6 Ensembl2175,741,537 - 175,748,960 (+)Ensembl
Ensembl Acc Id: ENSMUST00000178120   ⟹   ENSMUSP00000136499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,435,771 - 175,445,653 (+)Ensembl
GRCm38.p6 Ensembl2175,643,978 - 175,653,860 (+)Ensembl
Ensembl Acc Id: ENSMUST00000178133   ⟹   ENSMUSP00000137539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,533,330 - 175,543,212 (+)Ensembl
GRCm38.p6 Ensembl2175,741,537 - 175,751,419 (+)Ensembl
Ensembl Acc Id: ENSMUST00000179061   ⟹   ENSMUSP00000136479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,484,750 - 175,495,439 (-)Ensembl
GRCm38.p6 Ensembl2175,692,957 - 175,703,646 (-)Ensembl
Ensembl Acc Id: ENSMUST00000185834   ⟹   ENSMUSP00000139544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,442,798 - 175,445,653 (+)Ensembl
GRCm38.p6 Ensembl2175,651,005 - 175,653,860 (+)Ensembl
Ensembl Acc Id: ENSMUST00000189494   ⟹   ENSMUSP00000141172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2175,540,357 - 175,543,212 (+)Ensembl
GRCm38.p6 Ensembl2175,748,564 - 175,751,419 (+)Ensembl
RefSeq Acc Id: NM_001256480   ⟹   NP_001243409
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,261,184 - 175,277,570 (-)NCBI
GRCm382175,419,391 - 175,435,777 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017314489   ⟹   XP_017169978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,254,562 - 175,397,990 (-)NCBI
GRCm382175,418,037 - 175,606,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246016   ⟹   XP_030101876
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,254,562 - 175,397,985 (-)NCBI
GRCm382175,418,037 - 175,606,189 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246017   ⟹   XP_030101877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,254,615 - 175,277,643 (-)NCBI
GRCm382175,419,429 - 175,435,859 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246019   ⟹   XP_030101879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,254,615 - 175,277,658 (-)NCBI
GRCm382175,419,429 - 175,435,872 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246021   ⟹   XP_030101881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,254,615 - 175,277,672 (-)NCBI
GRCm382175,419,429 - 175,435,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156774   ⟹   XP_036012667
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,254,562 - 175,397,990 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156776   ⟹   XP_036012669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,254,615 - 175,277,643 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156790   ⟹   XP_036012683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,254,562 - 175,397,905 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156808   ⟹   XP_036012701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392175,254,615 - 175,277,658 (-)NCBI
Sequence:
1 to 5 of 33 rows
1 to 5 of 33 rows
RefSeq Acc Id: NP_001243409   ⟸   NM_001256480
- UniProtKB: A2ART4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169978   ⟸   XM_017314489
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030101876   ⟸   XM_030246016
- Peptide Label: isoform X3
- UniProtKB: A2ART4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101881   ⟸   XM_030246021
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030101879   ⟸   XM_030246019
- Peptide Label: isoform X5
C2H2-type   KRAB

Name Modeler Protein Id AA Range Protein Structure
AF-A2ART2-F1-model_v2 AlphaFold A2ART2 1-485 view protein structure
AF-A2ART4-F1-model_v2 AlphaFold A2ART4 1-498 view protein structure

RGD ID:6830533
Promoter ID:MM_KWN:33353
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:AK002444_2_0610010B08RIK,   AK039408_1_GM4724,   BC099528_2_GM2026,   ENSMUST00000099013,   ENSMUST00000109045,   ENSMUST00000109046,   OTTMUST00000038885,   OTTMUST00000086163
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362175,261,226 - 175,261,726 (-)MPROMDB


1 to 40 of 61 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000078870 UniProtKB/TrEMBL
  ENSMUSG00000078878 UniProtKB/TrEMBL
  ENSMUSG00000078880 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000078881 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000078886 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000078897 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000078899 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000094475 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000094932 Ensembl, UniProtKB/TrEMBL
  ENSMUSG00000095545 Ensembl
Ensembl Transcript ENSMUST00000108964.3 UniProtKB/TrEMBL
  ENSMUST00000108980.9 UniProtKB/TrEMBL
  ENSMUST00000108990.9 UniProtKB/TrEMBL
  ENSMUST00000109007.8 UniProtKB/TrEMBL
  ENSMUST00000109008.4 UniProtKB/TrEMBL
  ENSMUST00000109045 ENTREZGENE
  ENSMUST00000109045.9 UniProtKB/TrEMBL
  ENSMUST00000109046.10 UniProtKB/TrEMBL
  ENSMUST00000117267.2 UniProtKB/TrEMBL
  ENSMUST00000119149.8 UniProtKB/TrEMBL
  ENSMUST00000120521.2 UniProtKB/TrEMBL
  ENSMUST00000120959.8 UniProtKB/TrEMBL
  ENSMUST00000121393.9 UniProtKB/TrEMBL
  ENSMUST00000122097.9 UniProtKB/TrEMBL
  ENSMUST00000152941.2 UniProtKB/TrEMBL
  ENSMUST00000177700.9 UniProtKB/TrEMBL
  ENSMUST00000177981.9 UniProtKB/TrEMBL
  ENSMUST00000178120.9 UniProtKB/TrEMBL
  ENSMUST00000178133.9 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2-type UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:100039060 UniProtKB/TrEMBL
  mmu:100043381 UniProtKB/TrEMBL
  mmu:100043915 UniProtKB/TrEMBL
  mmu:102633156 UniProtKB/TrEMBL
1 to 40 of 61 rows