Trim28 (tripartite motif-containing 28) - Rat Genome Database

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Gene: Trim28 (tripartite motif-containing 28) Mus musculus
Analyze
Symbol: Trim28
Name: tripartite motif-containing 28
RGD ID: 736266
MGI Page MGI
Description: Enables DNA binding activity; protein kinase activity; and transcription coactivator activity. Involved in epithelial to mesenchymal transition and positive regulation of DNA methylation-dependent heterochromatin assembly. Acts upstream of or within several processes, including DNA methylation involved in embryo development; negative regulation of single stranded viral RNA replication via double stranded DNA intermediate; and regulation of nucleobase-containing compound metabolic process. Located in euchromatin; heterochromatin; and nucleoplasm. Part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including branchial arch; central nervous system; early conceptus; genitourinary system; and limb. Orthologous to human TRIM28 (tripartite motif containing 28); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1,4-dichlorobenzene; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA408787; E3 SUMO-protein ligase TRIM28; KAP; KAP-1; KRAB-A-interacting protein; KRI; KRIP-1; MGC102100; MommeD; MommeD9; RING-type E3 ubiquitin transferase TIF1-beta; Tif1; TIF1-beta; Tif1b; Tif1beta; transcription intermediary factor 1-beta; transcriptional intermediary factor 1, beta; tripartite motif protein 28; tripartite motif-containing protein 28
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,758,079 - 12,764,959 (+)NCBIGRCm39mm39
GRCm39 Ensembl712,733,041 - 12,764,962 (+)Ensembl
GRCm38713,024,152 - 13,031,032 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,999,114 - 13,031,035 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,609,501 - 13,616,381 (+)NCBIGRCm37mm9NCBIm37
MGSCv36711,924,340 - 11,931,208 (+)NCBImm8
Celera710,651,338 - 10,658,223 (+)NCBICelera
Cytogenetic Map7A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7671812   PMID:9742105   PMID:10318760   PMID:10330177   PMID:10347202   PMID:10349636   PMID:10562550   PMID:10851139   PMID:10922068   PMID:10940561   PMID:11042159   PMID:11076861  
PMID:11217851   PMID:11331592   PMID:11931765   PMID:11973266   PMID:12154074   PMID:12393749   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14613977   PMID:14681479  
PMID:14729942   PMID:14761981   PMID:15322135   PMID:15342492   PMID:15469996   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16880268   PMID:16904636  
PMID:16944949   PMID:16945326   PMID:17093407   PMID:17273560   PMID:17381543   PMID:17923087   PMID:18037959   PMID:18287239   PMID:18287559   PMID:18454139   PMID:18657500   PMID:18713861  
PMID:19081377   PMID:19099580   PMID:19258395   PMID:19270682   PMID:19321449   PMID:19442252   PMID:19710015   PMID:19850934   PMID:19865483   PMID:20059953   PMID:20075919   PMID:20164836  
PMID:20211142   PMID:20360068   PMID:20412781   PMID:20508149   PMID:20622265   PMID:20683885   PMID:21092094   PMID:21150899   PMID:21163256   PMID:21194568   PMID:21267068   PMID:21327095  
PMID:21382013   PMID:21518874   PMID:21531907   PMID:21565611   PMID:21589869   PMID:21746811   PMID:21873635   PMID:22055183   PMID:22110054   PMID:22205726   PMID:22308494   PMID:22442485  
PMID:22452978   PMID:22495301   PMID:22544392   PMID:22684873   PMID:22770845   PMID:22801370   PMID:22872677   PMID:22988430   PMID:23169648   PMID:23173799   PMID:23233547   PMID:23291531  
PMID:23293284   PMID:23493425   PMID:23569248   PMID:23937658   PMID:23954693   PMID:23969417   PMID:24009393   PMID:24025402   PMID:24092935   PMID:24302573   PMID:24413057   PMID:24457600  
PMID:24527388   PMID:24687849   PMID:24735877   PMID:24793032   PMID:24952961   PMID:25274305   PMID:25281858   PMID:25543143   PMID:25737281   PMID:25882849   PMID:25938714   PMID:26336360  
PMID:26417948   PMID:26527006   PMID:26824653   PMID:27112447   PMID:27123980   PMID:27350605   PMID:27432546   PMID:27658112   PMID:27746211   PMID:27779468   PMID:28115466   PMID:28123024  
PMID:28162770   PMID:28276606   PMID:28334004   PMID:28378742   PMID:28472341   PMID:28671696   PMID:28759843   PMID:28983112   PMID:29084956   PMID:29254152   PMID:29407374   PMID:29459677  
PMID:29482634   PMID:29651155   PMID:29661885   PMID:29669285   PMID:29795351   PMID:29863470   PMID:29955894   PMID:30017584   PMID:30196744   PMID:30208054   PMID:30457570   PMID:30550785  
PMID:30595499   PMID:31000713   PMID:31077711   PMID:31162944   PMID:31186351   PMID:31197172   PMID:31776254   PMID:31823782   PMID:31858687   PMID:32302554   PMID:32325033   PMID:32908124  
PMID:32994318   PMID:33008113   PMID:33397965   PMID:33619215   PMID:34214177   PMID:34373456  


Genomics

Comparative Map Data
Trim28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,758,079 - 12,764,959 (+)NCBIGRCm39mm39
GRCm39 Ensembl712,733,041 - 12,764,962 (+)Ensembl
GRCm38713,024,152 - 13,031,032 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,999,114 - 13,031,035 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,609,501 - 13,616,381 (+)NCBIGRCm37mm9NCBIm37
MGSCv36711,924,340 - 11,931,208 (+)NCBImm8
Celera710,651,338 - 10,658,223 (+)NCBICelera
Cytogenetic Map7A1NCBI
TRIM28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1958,544,064 - 58,550,722 (+)EnsemblGRCh38hg38GRCh38
GRCh381958,544,064 - 58,550,722 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371959,055,431 - 59,062,082 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,747,648 - 63,753,894 (+)NCBINCBI36hg18NCBI36
Build 341963,747,647 - 63,753,894NCBI
Celera1956,099,015 - 56,105,261 (+)NCBI
Cytogenetic Map19q13.43NCBI
HuRef1955,366,200 - 55,372,319 (+)NCBIHuRef
CHM1_11959,049,665 - 59,055,911 (+)NCBICHM1_1
Trim28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2173,652,441 - 73,659,388 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl173,652,709 - 73,659,380 (+)Ensembl
Rnor_6.0165,544,369 - 65,551,043 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,544,373 - 65,551,043 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,355,602 - 66,362,276 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,892,399 - 72,899,070 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1172,973,571 - 72,973,906 (-)NCBI
Celera160,180,424 - 60,187,048 (-)NCBICelera
Cytogenetic Map1q12NCBI
Trim28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555841,148,903 - 1,156,001 (+)NCBIChiLan1.0ChiLan1.0
TRIM28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11964,369,979 - 64,377,144 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,371,477 - 64,377,144 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01955,557,130 - 55,563,802 (+)NCBIMhudiblu_PPA_v0panPan3
TRIM28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,408,920 - 99,415,432 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,408,925 - 99,415,146 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,786,699 - 99,813,478 (-)NCBI
ROS_Cfam_1.01100,001,554 - 100,028,322 (-)NCBI
UMICH_Zoey_3.1199,646,919 - 99,673,683 (-)NCBI
UNSW_CanFamBas_1.0199,359,536 - 99,386,515 (-)NCBI
UU_Cfam_GSD_1.01100,114,388 - 100,141,157 (-)NCBI
Trim28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,986,447 - 217,992,258 (-)NCBI
SpeTri2.0NW_004937062126,832 - 132,938 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,094,648 - 63,101,532 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,094,382 - 63,101,532 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,820,188 - 50,826,376 (+)NCBI
ChlSab1.1 Ensembl650,819,833 - 50,827,010 (+)Ensembl
Vero_WHO_p1.0NW_0236660454,125,654 - 4,132,206 (+)NCBI
Trim28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462483249,324 - 56,113 (-)NCBI

Position Markers
RH126533  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38713,030,820 - 13,031,021UniSTSGRCm38
MGSCv37713,616,169 - 13,616,370UniSTSGRCm37
Celera710,658,011 - 10,658,212UniSTS
Cytogenetic Map7A2UniSTS
RH137168  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38713,030,723 - 13,030,930UniSTSGRCm38
MGSCv37713,616,072 - 13,616,279UniSTSGRCm37
Celera710,657,914 - 10,658,121UniSTS
Cytogenetic Map7A2UniSTS
Trim28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A2UniSTS
cM Map7 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301377Mprf_mmaternal performance (mouse)Not determined7120266693Mouse
10043984Pbft4_mpercent body fat 4 (mouse)Not determined7120266693Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120463409Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120463409Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121695147Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121818048Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121818048Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121818048Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7269777136697919Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7326656816903498Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7330353225179993Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7457747016953936Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined71028944244289559Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71060637344606511Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71278145246781452Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71278145246781452Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1308
Count of miRNA genes:585
Interacting mature miRNAs:711
Transcripts:ENSMUST00000005705, ENSMUST00000123603, ENSMUST00000123778, ENSMUST00000125136, ENSMUST00000128951, ENSMUST00000129122, ENSMUST00000142421, ENSMUST00000148354, ENSMUST00000149061
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF230391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF230392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF230878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U67303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X99644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000005705   ⟹   ENSMUSP00000005705
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,758,079 - 12,764,962 (+)Ensembl
GRCm38.p6 Ensembl713,024,152 - 13,031,035 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123603
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,762,052 - 12,763,292 (+)Ensembl
GRCm38.p6 Ensembl713,028,125 - 13,029,365 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123778
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,764,299 - 12,764,959 (+)Ensembl
GRCm38.p6 Ensembl713,030,372 - 13,031,032 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125136
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,763,018 - 12,764,030 (+)Ensembl
GRCm38.p6 Ensembl713,029,091 - 13,030,103 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,761,869 - 12,763,526 (+)Ensembl
GRCm38.p6 Ensembl713,027,942 - 13,029,599 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129122
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,763,631 - 12,764,274 (+)Ensembl
GRCm38.p6 Ensembl713,029,704 - 13,030,347 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142421
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,759,685 - 12,763,051 (+)Ensembl
GRCm38.p6 Ensembl713,025,758 - 13,029,124 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,761,671 - 12,762,429 (+)Ensembl
GRCm38.p6 Ensembl713,027,744 - 13,028,502 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149061
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,762,699 - 12,763,853 (+)Ensembl
GRCm38.p6 Ensembl713,028,772 - 13,029,926 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209577
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,733,041 - 12,762,452 (+)Ensembl
GRCm38.p6 Ensembl712,999,114 - 13,028,525 (+)Ensembl
RefSeq Acc Id: NM_011588   ⟹   NP_035718
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39712,758,079 - 12,764,959 (+)NCBI
GRCm38713,024,152 - 13,031,032 (+)ENTREZGENE
MGSCv37713,609,501 - 13,616,381 (+)RGD
Celera710,651,338 - 10,658,223 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035718   ⟸   NM_011588
- UniProtKB: Q62318 (UniProtKB/Swiss-Prot),   Q5EBP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000005705   ⟸   ENSMUST00000005705
Protein Domains
B box-type   Bromo   PHD-type   RING-type

Promoters
RGD ID:6891844
Promoter ID:EPDNEW_M9373
Type:initiation region
Name:Trim28_2
Description:Mus musculus tripartite motif-containing 28 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9374  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38713,024,147 - 13,024,207EPDNEW
RGD ID:6891846
Promoter ID:EPDNEW_M9374
Type:initiation region
Name:Trim28_1
Description:Mus musculus tripartite motif-containing 28 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9373  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38713,024,409 - 13,024,469EPDNEW
RGD ID:6842237
Promoter ID:MM_KWN:48769
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:OTTMUST00000058340
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36713,608,636 - 13,609,742 (+)MPROMDB
RGD ID:6842238
Promoter ID:MM_KWN:48770
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000058341,   OTTMUST00000058342,   OTTMUST00000058343,   OTTMUST00000058344,   OTTMUST00000058345,   OTTMUST00000058346,   OTTMUST00000058347,   OTTMUST00000058348
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36713,612,046 - 13,615,887 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109274 AgrOrtholog
Ensembl Genes ENSMUSG00000005566 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000005705 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000005705 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.920.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Bbox_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bromodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KAP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIF1beta_RING-HC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21849 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109274 ENTREZGENE
NCBI Gene 21849 ENTREZGENE
PANTHER PTHR25462:SF274 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trim28 PhenoGen
PROSITE ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BBC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3UDN8_MOUSE UniProtKB/TrEMBL
  Q5EBP9 ENTREZGENE, UniProtKB/TrEMBL
  Q62318 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P70391 UniProtKB/Swiss-Prot
  Q8C283 UniProtKB/Swiss-Prot
  Q99PN4 UniProtKB/Swiss-Prot