Capns1 (calpain, small subunit 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Capns1 (calpain, small subunit 1) Mus musculus
Analyze
Symbol: Capns1
Name: calpain, small subunit 1
RGD ID: 735487
MGI Page MGI
Description: Enables calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in protein catabolic process. Predicted to be located in cytosol and membrane. Predicted to be part of calpain complex. Is expressed in medulla oblongata basal plate mantle layer; nucleus pulposus; pons mantle layer; and ventral grey horn. Orthologous to human CAPNS1 (calpain small subunit 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ca; calcium-activated neutral proteinase small subunit; calcium-dependent protease small subunit 1; calpain 4; calpain regulatory subunit; calpain small subunit 1; CANP small subunit; Cap; Capa-4; Capa4; Capn4; CDPS; CSS1; D7Ertd146; D7Ertd146e
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39729,886,359 - 29,898,308 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl729,886,361 - 29,898,236 (-)EnsemblGRCm39 Ensembl
GRCm38730,186,934 - 30,198,883 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,186,936 - 30,198,811 (-)EnsemblGRCm38mm10GRCm38
MGSCv37730,971,961 - 30,980,067 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36729,895,708 - 29,903,784 (-)NCBIMGSCv36mm8
Celera724,783,745 - 24,791,616 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map717.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (ISO)
acetylsalicylic acid  (ISO)
alpha-phellandrene  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcium silicate  (EXP)
carbon nanotube  (EXP)
chlordecone  (EXP)
chlorpyrifos  (EXP)
cisplatin  (ISO)
crocidolite asbestos  (EXP,ISO)
cyproconazole  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (EXP)
Erionite  (EXP)
fenthion  (EXP)
flutamide  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
fumonisin B1  (EXP)
gallic acid  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (EXP)
ivermectin  (ISO)
kainic acid  (ISO)
mercury atom  (EXP)
mercury(0)  (EXP)
methidathion  (EXP)
methimazole  (ISO)
microcystin-LR  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (EXP)
propiconazole  (EXP)
resveratrol  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
calpain complex  (IBA,ISO)
cytoplasm  (IEA)
cytosol  (ISO)
membrane  (ISO)
plasma membrane  (IEA,TAS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2209092   PMID:8738748   PMID:8806430   PMID:8889548   PMID:9396712   PMID:9473662   PMID:9774740   PMID:10349636   PMID:10825211   PMID:10922068   PMID:11042159   PMID:11076861  
PMID:11087123   PMID:11217851   PMID:11937499   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15026410   PMID:15489334   PMID:15590628   PMID:15933726   PMID:16141072   PMID:16141073  
PMID:16411745   PMID:16597616   PMID:16602821   PMID:16632474   PMID:16783822   PMID:17101693   PMID:17110338   PMID:17121849   PMID:17470554   PMID:17646163   PMID:17967808   PMID:18028541  
PMID:18076376   PMID:18515801   PMID:18799693   PMID:18840650   PMID:19029949   PMID:19053044   PMID:20368361   PMID:20479866   PMID:21267068   PMID:21569760   PMID:21640083   PMID:21791606  
PMID:21795695   PMID:21873635   PMID:21911754   PMID:22005303   PMID:22753411   PMID:22821549   PMID:23536090   PMID:23589330   PMID:24375267   PMID:24457600   PMID:24550490   PMID:25660447  
PMID:26071646   PMID:26246018   PMID:26248159   PMID:26470784   PMID:27099352   PMID:27215381   PMID:27523632   PMID:28319173   PMID:30778623   PMID:32061585   PMID:32325033   PMID:32348180  
PMID:32665543   PMID:32989050   PMID:33208557   PMID:34580724   PMID:34997008   PMID:35242109   PMID:35447117   PMID:35729674   PMID:37660839  


Genomics

Comparative Map Data
Capns1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39729,886,359 - 29,898,308 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl729,886,361 - 29,898,236 (-)EnsemblGRCm39 Ensembl
GRCm38730,186,934 - 30,198,883 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,186,936 - 30,198,811 (-)EnsemblGRCm38mm10GRCm38
MGSCv37730,971,961 - 30,980,067 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36729,895,708 - 29,903,784 (-)NCBIMGSCv36mm8
Celera724,783,745 - 24,791,616 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map717.31NCBI
CAPNS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381936,140,066 - 36,150,353 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1936,139,953 - 36,150,353 (+)EnsemblGRCh38hg38GRCh38
GRCh371936,630,968 - 36,641,255 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,322,758 - 41,333,095 (+)NCBINCBI36Build 36hg18NCBI36
Build 341941,322,757 - 41,333,094NCBI
Celera1933,345,090 - 33,355,427 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1933,136,390 - 33,146,727 (+)NCBIHuRef
CHM1_11936,632,259 - 36,643,261 (+)NCBICHM1_1
T2T-CHM13v2.01938,685,882 - 38,696,171 (+)NCBIT2T-CHM13v2.0
Capns1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,572,083 - 94,582,332 (-)NCBIGRCr8
mRatBN7.2185,444,613 - 85,454,861 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,444,608 - 85,454,795 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx190,861,573 - 90,871,706 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,325,245 - 99,335,358 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,619,837 - 92,629,970 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,058,528 - 91,064,880 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,652,446 - 88,657,845 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,652,446 - 88,657,845 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,056,305 - 92,207,135 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,519,568 - 85,525,929 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,820,845 - 79,830,375 (-)NCBICelera
Cytogenetic Map1q21NCBI
Capns1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,447,111 - 2,452,982 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,446,631 - 2,454,369 (-)NCBIChiLan1.0ChiLan1.0
CAPNS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22042,142,012 - 42,152,045 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11944,125,513 - 44,135,599 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01933,059,291 - 33,069,311 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,806,746 - 41,816,507 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,806,746 - 41,816,858 (+)Ensemblpanpan1.1panPan2
CAPNS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,549,608 - 116,558,928 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,550,000 - 116,558,807 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1115,955,616 - 115,964,853 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,151,011 - 117,160,206 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,151,015 - 117,159,238 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11116,720,393 - 116,729,644 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,340,642 - 116,349,899 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,393,688 - 117,402,927 (-)NCBIUU_Cfam_GSD_1.0
Capns1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,381,612 - 11,391,526 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936922151,599 - 164,787 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936922151,791 - 161,655 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAPNS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,511,295 - 45,518,610 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,511,410 - 45,518,610 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,913,605 - 40,920,805 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAPNS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1631,049,509 - 31,061,219 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl631,050,494 - 31,061,421 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,849,775 - 8,861,494 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Capns1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479410,382,157 - 10,390,768 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Capns1
537 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1355
Count of miRNA genes:508
Interacting mature miRNAs:589
Transcripts:ENSMUST00000001845, ENSMUST00000108196, ENSMUST00000126116, ENSMUST00000129761, ENSMUST00000141851, ENSMUST00000146852, ENSMUST00000148973
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse

Markers in Region
AF058298  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38730,187,061 - 30,187,173UniSTSGRCm38
MGSCv37730,972,080 - 30,972,192UniSTSGRCm37
Celera724,783,864 - 24,783,976UniSTS
Cytogenetic Map7B1UniSTS
cM Map79.5UniSTS
Whitehead/MRC_RH7414.23UniSTS
D7Ertd146e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38730,186,995 - 30,187,244UniSTSGRCm38
MGSCv37730,972,014 - 30,972,263UniSTSGRCm37
Celera724,783,798 - 24,784,047UniSTS
Cytogenetic Map7B1UniSTS
cM Map79.5UniSTS
UniSTS:225133  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38730,186,972 - 30,187,085UniSTSGRCm38
MGSCv37730,971,991 - 30,972,104UniSTSGRCm37
Celera724,783,775 - 24,783,888UniSTS
Cytogenetic Map7B1UniSTS
cM Map79.5UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000001845   ⟹   ENSMUSP00000001845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,886,367 - 29,898,236 (-)Ensembl
GRCm38.p6 Ensembl730,186,942 - 30,198,811 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108196   ⟹   ENSMUSP00000103831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,886,415 - 29,892,531 (-)Ensembl
GRCm38.p6 Ensembl730,186,990 - 30,193,106 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126116   ⟹   ENSMUSP00000117951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,886,368 - 29,894,473 (-)Ensembl
GRCm38.p6 Ensembl730,186,943 - 30,195,048 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,886,908 - 29,893,206 (-)Ensembl
GRCm38.p6 Ensembl730,187,483 - 30,193,781 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141851
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,886,932 - 29,891,835 (-)Ensembl
GRCm38.p6 Ensembl730,187,507 - 30,192,410 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,892,971 - 29,894,461 (-)Ensembl
GRCm38.p6 Ensembl730,193,546 - 30,195,036 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,886,593 - 29,889,651 (-)Ensembl
GRCm38.p6 Ensembl730,187,168 - 30,190,226 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,886,361 - 29,892,397 (-)Ensembl
GRCm38.p6 Ensembl730,186,936 - 30,192,972 (-)Ensembl
RefSeq Acc Id: NM_009795   ⟹   NP_033925
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,886,359 - 29,894,578 (-)NCBI
GRCm38730,186,934 - 30,195,153 (-)NCBI
MGSCv37730,971,961 - 30,980,067 (-)RGD
Celera724,783,745 - 24,791,616 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539488   ⟹   XP_006539551
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,886,367 - 29,898,308 (-)NCBI
GRCm38730,186,942 - 30,198,883 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250420   ⟹   XP_011248722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,886,367 - 29,893,173 (-)NCBI
GRCm38730,186,942 - 30,193,748 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033925   ⟸   NM_009795
- UniProtKB: Q8VEK4 (UniProtKB/Swiss-Prot),   Q8CEI2 (UniProtKB/Swiss-Prot),   Q5BKQ2 (UniProtKB/Swiss-Prot),   Q3V0X5 (UniProtKB/Swiss-Prot),   D3YW48 (UniProtKB/Swiss-Prot),   Q9R1C5 (UniProtKB/Swiss-Prot),   O88456 (UniProtKB/Swiss-Prot),   A0A0R4IZW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539551   ⟸   XM_006539488
- Peptide Label: isoform X1
- UniProtKB: Q8VEK4 (UniProtKB/Swiss-Prot),   Q8CEI2 (UniProtKB/Swiss-Prot),   Q5BKQ2 (UniProtKB/Swiss-Prot),   Q3V0X5 (UniProtKB/Swiss-Prot),   D3YW48 (UniProtKB/Swiss-Prot),   Q9R1C5 (UniProtKB/Swiss-Prot),   O88456 (UniProtKB/Swiss-Prot),   A0A0R4IZW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011248722   ⟸   XM_011250420
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000103831   ⟸   ENSMUST00000108196
RefSeq Acc Id: ENSMUSP00000117951   ⟸   ENSMUST00000126116
RefSeq Acc Id: ENSMUSP00000001845   ⟸   ENSMUST00000001845
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88456-F1-model_v2 AlphaFold O88456 1-268 view protein structure

Promoters
RGD ID:6892582
Promoter ID:EPDNEW_M9742
Type:initiation region
Name:Capns1_1
Description:Mus musculus calpain, small subunit 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38730,195,058 - 30,195,118EPDNEW
RGD ID:6840767
Promoter ID:MM_KWN:49781
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108196,   OTTMUST00000052763,   OTTMUST00000052764,   OTTMUST00000052765,   UC009GDQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36730,977,571 - 30,980,022 (-)MPROMDB
RGD ID:6840768
Promoter ID:MM_KWN:49782
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   BoneMarrow_0Hour,   Brain,   ES_Cell,   Liver,   Lung,   MEF_B4
Transcripts:OTTMUST00000052760,   OTTMUST00000052762
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36730,980,026 - 30,980,742 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88266 AgrOrtholog
Ensembl Genes ENSMUSG00000001794 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000001845 ENTREZGENE
  ENSMUST00000001845.13 UniProtKB/Swiss-Prot
  ENSMUST00000108196.8 UniProtKB/TrEMBL
  ENSMUST00000126116 ENTREZGENE
  ENSMUST00000126116.3 UniProtKB/Swiss-Prot
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12336 UniProtKB/Swiss-Prot
MGD MGI:88266 ENTREZGENE
NCBI Gene 12336 ENTREZGENE
PANTHER CALPAIN, SMALL SUBUNIT 1 A-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR46735:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Capns1 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4IZW8 ENTREZGENE
  A0A0R4J1C2_MOUSE UniProtKB/TrEMBL
  CPNS1_MOUSE UniProtKB/Swiss-Prot
  D3YW48 ENTREZGENE
  O88456 ENTREZGENE
  Q3V0X5 ENTREZGENE
  Q5BKQ2 ENTREZGENE
  Q8CEI2 ENTREZGENE
  Q8VEK4 ENTREZGENE
  Q9R1C5 ENTREZGENE
UniProt Secondary A0A0R4IZW8 UniProtKB/Swiss-Prot
  D3YW48 UniProtKB/Swiss-Prot
  Q3V0X5 UniProtKB/Swiss-Prot
  Q5BKQ2 UniProtKB/Swiss-Prot
  Q8CEI2 UniProtKB/Swiss-Prot
  Q8VEK4 UniProtKB/Swiss-Prot
  Q9R1C5 UniProtKB/Swiss-Prot