Vmn1r142 (vomeronasal 1 receptor 142) - Rat Genome Database

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Gene: Vmn1r142 (vomeronasal 1 receptor 142) Mus musculus
Analyze
Symbol: Vmn1r142
Name: vomeronasal 1 receptor 142
RGD ID: 1619352
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EG667464; Gm8647; vomernasal 1 receptor Vmn1r142
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39721,862,543 - 21,863,460 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl721,862,543 - 21,863,460 (-)EnsemblGRCm39 Ensembl
GRCm38722,163,118 - 22,164,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl722,163,118 - 22,164,035 (-)EnsemblGRCm38mm10GRCm38
MGSCv37722,948,137 - 22,949,054 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36721,871,878 - 21,872,795 (-)NCBIMGSCv36mm8
Cytogenetic Map7A3NCBI
cM Map710.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:44
Interacting mature miRNAs:44
Transcripts:ENSMUST00000169697
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000169697   ⟹   ENSMUSP00000126410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl721,862,543 - 21,863,460 (-)Ensembl
GRCm38.p6 Ensembl722,163,118 - 22,164,035 (-)Ensembl
RefSeq Acc Id: NM_001166749   ⟹   NP_001160221
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39721,862,543 - 21,863,460 (-)NCBI
GRCm38722,163,118 - 22,164,035 (-)ENTREZGENE
MGSCv37722,948,137 - 22,949,054 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001160221 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000126410
  ENSMUSP00000126410.2
RefSeq Acc Id: NP_001160221   ⟸   NM_001166749
- UniProtKB: K7N6U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000126410   ⟸   ENSMUST00000169697
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-K7N6U0-F1-model_v2 AlphaFold K7N6U0 1-305 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000095273 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000169697 ENTREZGENE
  ENSMUST00000169697.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:667464 UniProtKB/TrEMBL
MGD MGI:3644264 ENTREZGENE
NCBI Gene 667464 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  TASTE RECEPTOR TYPE 2-RELATED UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r142 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt K7N6U0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r142  vomeronasal 1 receptor 142  Gm8647  predicted gene 8647  Symbol and/or name change 5135510 APPROVED