Garre1 (granule associated Rac and RHOG effector 1) - Rat Genome Database

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Gene: Garre1 (granule associated Rac and RHOG effector 1) Mus musculus
Analyze
Symbol: Garre1
Name: granule associated Rac and RHOG effector 1
RGD ID: 1318190
MGI Page MGI
Description: Predicted to enable CCR4-NOT complex binding activity and small GTPase binding activity. Predicted to be involved in Rac protein signal transduction. Predicted to be located in P-body. Is expressed in lung and ovary. Orthologous to human GARRE1 (granule associated Rac and RHOG effector 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4931406P16Rik; AA553327; granule associated Rac and RHOG effector protein 1; hypothetical protein LOC233103; mKIAA0355; uncharacterized protein KIAA0355 homolog; uncharacterized protein LOC233103
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39733,936,132 - 34,012,990 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl733,936,132 - 34,012,976 (-)EnsemblGRCm39 Ensembl
GRCm38734,236,707 - 34,313,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl734,236,707 - 34,313,551 (-)EnsemblGRCm38mm10GRCm38
MGSCv37735,021,733 - 35,070,628 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36733,945,474 - 33,994,369 (-)NCBIMGSCv36mm8
Celera729,378,325 - 29,428,158 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Garre1Mousehereditary spastic paraplegia 75  ISOGARRE1 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 75ClinVarPMID:28492532

1 to 20 of 31 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Garre1Mouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOGarre1 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of GARRE1 mRNACTDPMID:34747641
Garre1Mouse4-hydroxyphenyl retinamide increases expressionEXP 6480464Fenretinide results in increased expression of GARRE1 mRNACTDPMID:28973697
Garre1Mouseall-trans-retinoic acid decreases expressionISOGARRE1 (Homo sapiens)6480464Tretinoin results in decreased expression of GARRE1 mRNACTDPMID:33167477
Garre1Mouseantirheumatic drug increases expressionISOGARRE1 (Homo sapiens)6480464Antirheumatic Agents results in increased expression of GARRE1 mRNACTDPMID:24449571
Garre1Mousebenzo[a]pyrene affects methylationISOGARRE1 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of GARRE1 5' UTRCTDPMID:27901495
Garre1Mousebisphenol A increases expressionISOGarre1 (Rattus norvegicus)6480464bisphenol A results in increased expression of GARRE1 mRNACTDPMID:25181051
Garre1Mousebisphenol A decreases methylationISOGARRE1 (Homo sapiens)6480464bisphenol A results in decreased methylation of GARRE1 geneCTDPMID:31601247
Garre1Mousebisphenol A decreases expressionISOGarre1 (Rattus norvegicus)6480464bisphenol A results in decreased expression of GARRE1 mRNACTDPMID:34947998
Garre1Mousecadmium atom multiple interactionsISOGARRE1 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of GARRE1 mRNACTDPMID:35301059
Garre1Mousecadmium dichloride multiple interactionsISOGARRE1 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of GARRE1 mRNACTDPMID:35301059
Garre1Mousecaffeine decreases phosphorylationISOGARRE1 (Homo sapiens)6480464Caffeine results in decreased phosphorylation of GARRE1 proteinCTDPMID:35688186
Garre1Mousecarnosic acid multiple interactionsEXP 6480464salvin inhibits the reaction [sodium arsenite results in decreased expression of GARRE1 mRNA]CTDPMID:35202923
Garre1Mousecopper(II) sulfate decreases expressionISOGARRE1 (Homo sapiens)6480464Copper Sulfate results in decreased expression of GARRE1 mRNACTDPMID:19549813
Garre1Mousecyclosporin A increases expressionISOGARRE1 (Homo sapiens)6480464Cyclosporine results in increased expression of GARRE1 mRNACTDPMID:20106945
Garre1Mousedoxorubicin decreases expressionISOGARRE1 (Homo sapiens)6480464Doxorubicin results in decreased expression of GARRE1 mRNACTDPMID:29803840
Garre1MouseGSK-J4 increases expressionISOGARRE1 (Homo sapiens)6480464GSK-J4 results in increased expression of GARRE1 mRNACTDPMID:29301935
Garre1Mousehydrogen cyanide increases expressionEXP 6480464Hydrogen Cyanide results in increased expression of GARRE1 mRNACTDPMID:33914522
Garre1Mouseleflunomide increases expressionISOGARRE1 (Homo sapiens)6480464Leflunomide results in increased expression of GARRE1 mRNACTDPMID:28988120
Garre1Mousemethylparaben increases expressionISOGARRE1 (Homo sapiens)6480464methylparaben results in increased expression of GARRE1 mRNACTDPMID:31745603
Garre1Mouseozone multiple interactionsEXP 6480464[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of GARRE1 mRNACTDPMID:34911549

1 to 20 of 31 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Garre1MouseRac protein signal transduction involved_inISOUniProtKB:O150632290270 GO_CentralGO_REF:0000119
Garre1MouseRac protein signal transduction involved_inIBAPANTHER:PTN002311704 and UniProtKB:O150632290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Garre1MouseP-body located_inISOUniProtKB:O150632290270 GO_CentralGO_REF:0000119

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Garre1MouseCCR4-NOT complex binding enablesISOUniProtKB:O150632290270 GO_CentralGO_REF:0000119
Garre1MouseCCR4-NOT complex binding enablesIBAPANTHER:PTN002311704 and UniProtKB:O150632290270 GO_CentralGO_REF:0000033
Garre1Mouseprotein binding enablesISOUniProtKB:Q8NDV7 and UniProtKB:Q9UKV89068941 PMID:29395067UniProtPMID:29395067
Garre1Mouseprotein binding enablesISOUniProtKB:Q8N5S99068941 PMID:28514442 and PMID:33961781IntActPMID:28514442 and PMID:33961781
Garre1Mousesmall GTPase binding enablesISOUniProtKB:O150632290270 GO_CentralGO_REF:0000119

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Garre1Mousehyperactivity  IEA 5509061 MGI 

#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14621295   PMID:16107646  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21873635   PMID:38355793  



Garre1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39733,936,132 - 34,012,990 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl733,936,132 - 34,012,976 (-)EnsemblGRCm39 Ensembl
GRCm38734,236,707 - 34,313,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl734,236,707 - 34,313,551 (-)EnsemblGRCm38mm10GRCm38
MGSCv37735,021,733 - 35,070,628 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36733,945,474 - 33,994,369 (-)NCBIMGSCv36mm8
Celera729,378,325 - 29,428,158 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.48NCBI
GARRE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381934,254,554 - 34,355,566 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1934,254,552 - 34,355,566 (+)EnsemblGRCh38hg38GRCh38
GRCh371934,745,459 - 34,846,471 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361939,437,296 - 39,538,311 (+)NCBINCBI36Build 36hg18NCBI36
Build 341939,482,420 - 39,538,310NCBI
Celera1931,447,207 - 31,548,203 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1931,250,818 - 31,351,606 (+)NCBIHuRef
CHM1_11934,746,888 - 34,847,982 (+)NCBICHM1_1
T2T-CHM13v2.01936,781,896 - 36,882,838 (+)NCBIT2T-CHM13v2.0
Garre1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,999,305 - 96,077,641 (-)NCBIGRCr8
mRatBN7.2186,862,121 - 86,939,725 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,862,121 - 86,939,687 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx192,265,632 - 92,319,004 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,731,637 - 100,785,002 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,023,928 - 94,077,305 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0190,097,331 - 90,176,119 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl190,097,334 - 90,176,105 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0191,240,934 - 91,318,702 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,694,994 - 86,745,251 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,770,872 - 86,823,077 (-)NCBI
Celera181,228,351 - 81,280,659 (-)NCBICelera
Cytogenetic Map1q21NCBI
Garre1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,920,083 - 3,970,981 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554683,883,615 - 3,973,288 (+)NCBIChiLan1.0ChiLan1.0
GARRE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22040,240,834 - 40,341,729 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11942,240,884 - 42,341,764 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01931,191,349 - 31,292,232 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11939,932,336 - 40,021,261 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1939,951,290 - 40,021,261 (+)Ensemblpanpan1.1panPan2
GARRE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,957,092 - 118,027,079 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,959,214 - 118,006,439 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1117,355,211 - 117,432,512 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,552,602 - 118,629,960 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,552,574 - 118,629,880 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11118,113,758 - 118,191,075 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,740,099 - 117,817,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,798,330 - 118,875,722 (-)NCBIUU_Cfam_GSD_1.0
Garre1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093499,941,738 - 10,029,149 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365701,615,940 - 1,695,535 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365701,616,736 - 1,704,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GARRE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl643,933,787 - 44,030,653 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1643,933,704 - 44,030,663 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2639,402,288 - 39,475,725 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GARRE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1629,299,979 - 29,395,228 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl629,345,262 - 29,395,722 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,116,444 - 7,167,992 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Garre1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,862,276 - 8,913,996 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,861,101 - 8,913,225 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Garre1
3682 total Variants

1 to 10 of 21 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 3q21.3(chr3:128601065-129182579)x3 copy number gain See cases [RCV000050795] Chr3:128601065..129182579 [GRCh38]
Chr3:128319908..128901422 [GRCh37]
Chr3:129802598..130384112 [NCBI36]
Chr3:3q21.3
uncertain significance
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29
pathogenic
GRCh38/hg38 3q21.3-23(chr3:126106779-140918089)x3 copy number gain See cases [RCV000142010] Chr3:126106779..140918089 [GRCh38]
Chr3:125825622..140636931 [GRCh37]
Chr3:127308312..142119621 [NCBI36]
Chr3:3q21.3-23
uncertain significance
GRCh38/hg38 3q11.1-24(chr3:93800620-145695381)x3 copy number gain See cases [RCV000142340] Chr3:93800620..145695381 [GRCh38]
Chr3:93519464..145413168 [GRCh37]
Chr3:95002154..146895858 [NCBI36]
Chr3:3q11.1-24
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3q21.3-22.1(chr3:128660985-129811200)x1 copy number loss not provided [RCV000682304] Chr3:128660985..129811200 [GRCh37]
Chr3:3q21.3-22.1
uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
Single allele deletion Deafness-lymphedema-leukemia syndrome [RCV001541925] Chr3:127966423..136853218 [GRCh37]
Chr3:3q21.3-22.3
pathogenic
1 to 10 of 21 rows

Predicted Target Of
Summary Value
Count of predictions:1607
Count of miRNA genes:513
Interacting mature miRNAs:644
Transcripts:ENSMUST00000085592, ENSMUST00000108074, ENSMUST00000132975, ENSMUST00000146025
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 36 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse

1 to 10 of 36 rows
RH124518  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38734,238,696 - 34,238,891UniSTSGRCm38
MGSCv37735,023,715 - 35,023,910UniSTSGRCm37
Celera729,380,307 - 29,380,502UniSTS
Cytogenetic Map7B1UniSTS
D7S661  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38734,256,748 - 34,257,313UniSTSGRCm38
MGSCv37735,041,767 - 35,042,332UniSTSGRCm37
Celera729,399,302 - 29,399,867UniSTS
Cytogenetic Map7B1UniSTS






1 to 18 of 18 rows
RefSeq Transcripts NM_001382305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK076994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX537302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 18 of 18 rows

Ensembl Acc Id: ENSMUST00000085592   ⟹   ENSMUSP00000082730
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl733,936,139 - 33,985,024 (-)Ensembl
GRCm38.p6 Ensembl734,236,714 - 34,285,599 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108074   ⟹   ENSMUSP00000103709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl733,936,132 - 34,012,976 (-)Ensembl
GRCm38.p6 Ensembl734,236,707 - 34,313,551 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl733,984,902 - 34,012,970 (-)Ensembl
GRCm38.p6 Ensembl734,285,477 - 34,313,545 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl733,984,988 - 34,004,937 (-)Ensembl
GRCm38.p6 Ensembl734,285,563 - 34,305,512 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205264   ⟹   ENSMUSP00000145897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl733,938,546 - 33,944,730 (-)Ensembl
GRCm38.p6 Ensembl734,239,121 - 34,245,305 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl733,953,467 - 33,956,644 (-)Ensembl
GRCm38.p6 Ensembl734,254,042 - 34,257,219 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl734,011,492 - 34,012,933 (-)Ensembl
GRCm38.p6 Ensembl734,312,067 - 34,313,508 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl733,983,383 - 34,012,975 (-)Ensembl
GRCm38.p6 Ensembl734,283,958 - 34,313,550 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl733,939,547 - 33,944,541 (-)Ensembl
GRCm38.p6 Ensembl734,240,122 - 34,245,116 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206399   ⟹   ENSMUSP00000145762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl733,937,005 - 34,012,947 (-)Ensembl
GRCm38.p6 Ensembl734,237,580 - 34,313,522 (-)Ensembl
RefSeq Acc Id: NM_001382305   ⟹   NP_001369234
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,972 (-)NCBI
GRCm38734,236,707 - 34,313,547 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172741   ⟹   NP_766329
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,972 (-)NCBI
GRCm38734,236,707 - 34,313,547 (-)NCBI
MGSCv37735,021,733 - 35,070,628 (-)RGD
Celera729,378,325 - 29,428,158 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539895   ⟹   XP_006539958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,973 (-)NCBI
GRCm38734,236,707 - 34,313,548 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539896   ⟹   XP_006539959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,990 (-)NCBI
GRCm38734,236,707 - 34,313,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539897   ⟹   XP_006539960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,967 (-)NCBI
GRCm38734,236,707 - 34,313,543 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539899   ⟹   XP_006539962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,005,123 (-)NCBI
GRCm38734,236,707 - 34,305,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242458   ⟹   XP_030098318
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,971 (-)NCBI
GRCm38734,236,707 - 34,313,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242459   ⟹   XP_030098319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,554 (-)NCBI
GRCm38734,236,707 - 34,313,129 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242460   ⟹   XP_030098320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,473 (-)NCBI
GRCm38734,236,707 - 34,313,055 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242461   ⟹   XP_030098321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,973 (-)NCBI
GRCm38734,236,707 - 34,313,548 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242462   ⟹   XP_030098322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39733,936,132 - 34,012,554 (-)NCBI
GRCm38734,236,707 - 34,313,129 (-)NCBI
Sequence:
1 to 5 of 15 rows
1 to 5 of 15 rows
RefSeq Acc Id: NP_766329   ⟸   NM_172741
- UniProtKB: Q6PAL5 (UniProtKB/TrEMBL),   Q8C5X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539959   ⟸   XM_006539896
- Peptide Label: isoform X1
- UniProtKB: Q6PAL5 (UniProtKB/TrEMBL),   Q8C5X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539958   ⟸   XM_006539895
- Peptide Label: isoform X1
- UniProtKB: Q6PAL5 (UniProtKB/TrEMBL),   Q8C5X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539960   ⟸   XM_006539897
- Peptide Label: isoform X1
- UniProtKB: Q6PAL5 (UniProtKB/TrEMBL),   Q8C5X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539962   ⟸   XM_006539899
- Peptide Label: isoform X1
- UniProtKB: Q6PAL5 (UniProtKB/TrEMBL),   Q8C5X1 (UniProtKB/TrEMBL)
- Sequence:
DUF4745

Name Modeler Protein Id AA Range Protein Structure
AF-Q8C5X1-F1-model_v2 AlphaFold Q8C5X1 1-1059 view protein structure

RGD ID:8663633
Promoter ID:EPDNEW_M9848
Type:initiation region
Name:4931406P16Rik_1
Description:Mus musculus RIKEN cDNA 4931406P16 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9849  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38734,313,547 - 34,313,607EPDNEW
RGD ID:8663635
Promoter ID:EPDNEW_M9849
Type:initiation region
Name:4931406P16Rik_2
Description:Mus musculus RIKEN cDNA 4931406P16 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9848  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38734,313,549 - 34,313,609EPDNEW
RGD ID:6840275
Promoter ID:MM_KWN:49986
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   Spleen
Transcripts:NM_172741
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36735,069,711 - 35,070,211 (-)MPROMDB


1 to 23 of 23 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000066571 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000085592 ENTREZGENE
  ENSMUST00000085592.6 UniProtKB/TrEMBL
  ENSMUST00000108074 ENTREZGENE
  ENSMUST00000108074.8 UniProtKB/TrEMBL
  ENSMUST00000205264.2 UniProtKB/TrEMBL
  ENSMUST00000206399 ENTREZGENE
  ENSMUST00000206399.2 UniProtKB/TrEMBL
InterPro DUF4745 UniProtKB/TrEMBL
  KIAA0355-like UniProtKB/TrEMBL
MGD MGI:1924311 ENTREZGENE
NCBI Gene Garre1 ENTREZGENE
PANTHER GRANULE ASSOCIATED RAC AND RHOG EFFECTOR PROTEIN 1 UniProtKB/TrEMBL
  PTHR15703 UniProtKB/TrEMBL
Pfam DUF4745 UniProtKB/TrEMBL
PhenoGen Garre1 PhenoGen
UniProt A0A0U1RNZ3_MOUSE UniProtKB/TrEMBL
  A0A0U1RPA2_MOUSE UniProtKB/TrEMBL
  Q3TDH2_MOUSE UniProtKB/TrEMBL
  Q3UYG5_MOUSE UniProtKB/TrEMBL
  Q6PAL5 ENTREZGENE, UniProtKB/TrEMBL
  Q6ZQD1_MOUSE UniProtKB/TrEMBL
  Q8C5X1 ENTREZGENE, UniProtKB/TrEMBL
1 to 23 of 23 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Garre1  granule associated Rac and RHOG effector 1  4931406P16Rik  RIKEN cDNA 4931406P16 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 4931406P16Rik  RIKEN cDNA 4931406P16 gene  Garre1  granule associated Rac and RHOG effector 1  Symbol and/or name change 5135510 APPROVED
2020-04-07 Garre1  granule associated Rac and RHOG effector 1  4931406P16Rik  RIKEN cDNA 4931406P16 gene  Symbol and/or name change 5135510 APPROVED