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Gene: Garre1 (granule associated Rac and RHOG effector 1) Ictidomys tridecemlineatus

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Symbol:

Garre1

Name:

granule associated Rac and RHOG effector 1

RGD ID:

12688820

Description:

ENCODES a protein that exhibits CCR4-NOT complex binding (inferred); small GTPase binding (inferred); INVOLVED IN Rac protein signal transduction (inferred); ASSOCIATED WITH hereditary spastic paraplegia 75 (ortholog); FOUND IN P-body (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

granule associated Rac and RHOG effector protein 1; Kiaa0355; KIAA0355 ortholog; uncharacterized protein KIAA0355 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	9,941,738 - 10,029,149 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	1,615,940 - 1,695,535 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	1,616,736 - 1,704,067 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Garre1	Squirrel	hereditary spastic paraplegia 75		ISO	RGD:1318189	8554872	ClinVar Annotator: match by term: Hereditary spastic paraplegia 75	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Garre1	Squirrel	Rac protein signal transduction	involved_in	IEA	PANTHER:PTN000403484	150520179		TreeGrafter	GO_REF:0000118
Garre1	Squirrel	Rac protein signal transduction	involved_in	IEA	UniProtKB:O15063\|ensembl:ENSP00000299505	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Garre1	Squirrel	P-body	located_in	IEA	UniProtKB:O15063\|ensembl:ENSP00000299505	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Garre1	Squirrel	CCR4-NOT complex binding	enables	IEA	PANTHER:PTN000403484	150520179		TreeGrafter	GO_REF:0000118
Garre1	Squirrel	CCR4-NOT complex binding	enables	IEA	UniProtKB:O15063\|ensembl:ENSP00000299505	150520179		Ensembl	GO_REF:0000107
Garre1	Squirrel	protein binding	enables	ISO	UniProtKB:Q8N5S9	9068941	PMID:28514442, PMID:33961781	IntAct	PMID:28514442\|PMID:33961781
Garre1	Squirrel	protein binding	enables	ISO	UniProtKB:Q8NDV7\|UniProtKB:Q9UKV8	9068941	PMID:29395067	UniProt	PMID:29395067
Garre1	Squirrel	small GTPase binding	enables	IEA	UniProtKB:O15063\|ensembl:ENSP00000299505	150520179		Ensembl	GO_REF:0000107

PMID:30032202

Garre1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	9,941,738 - 10,029,149 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	1,615,940 - 1,695,535 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	1,616,736 - 1,704,067 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GARRE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	34,254,554 - 34,355,566 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	34,254,552 - 34,355,566 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	34,745,459 - 34,846,471 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	39,437,296 - 39,538,311 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	39,482,420 - 39,538,310	NCBI
Celera	19	31,447,207 - 31,548,203 (+)	NCBI		Celera
Cytogenetic Map	19	q13.11	NCBI
HuRef	19	31,250,818 - 31,351,606 (+)	NCBI		HuRef
CHM1_1	19	34,746,888 - 34,847,982 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	36,781,896 - 36,882,838 (+)	NCBI		T2T-CHM13v2.0

Garre1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	33,936,132 - 34,012,990 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	33,936,132 - 34,012,976 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	34,236,707 - 34,313,554 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	34,236,707 - 34,313,551 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	35,021,733 - 35,070,628 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	33,945,474 - 33,994,369 (-)	NCBI		MGSCv36	mm8
Celera	7	29,378,325 - 29,428,158 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	19.48	NCBI

Garre1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	95,999,305 - 96,077,641 (-)	NCBI		GRCr8
mRatBN7.2	1	86,862,121 - 86,939,725 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	86,862,121 - 86,939,687 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	92,265,632 - 92,319,004 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	100,731,637 - 100,785,002 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	94,023,928 - 94,077,305 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	90,097,331 - 90,176,119 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	90,097,334 - 90,176,105 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	91,240,934 - 91,318,702 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	86,694,994 - 86,745,251 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	86,770,872 - 86,823,077 (-)	NCBI
Celera	1	81,228,351 - 81,280,659 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Garre1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	3,920,083 - 3,970,981 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	3,883,615 - 3,973,288 (+)	NCBI	ChiLan1.0	ChiLan1.0

GARRE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	40,240,834 - 40,341,729 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	42,240,884 - 42,341,764 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	31,191,349 - 31,292,232 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	39,932,336 - 40,021,261 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	39,951,290 - 40,021,261 (+)	Ensembl	panpan1.1		panPan2

GARRE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	117,957,092 - 118,027,079 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	117,959,214 - 118,006,439 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	117,355,211 - 117,432,512 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	118,552,602 - 118,629,960 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	118,552,574 - 118,629,880 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	118,113,758 - 118,191,075 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	117,740,099 - 117,817,214 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	118,798,330 - 118,875,722 (-)	NCBI		UU_Cfam_GSD_1.0

GARRE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	43,933,787 - 44,030,653 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	43,933,704 - 44,030,663 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	39,402,288 - 39,475,725 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GARRE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	29,299,979 - 29,395,228 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	29,345,262 - 29,395,722 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	7,116,444 - 7,167,992 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Garre1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	8,862,276 - 8,913,996 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	8,861,101 - 8,913,225 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_021730048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000002568 ⟹ ENSSTOP00000002298

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936570	1,615,940 - 1,695,535 (-)	Ensembl

RefSeq Acc Id:

XM_040280024 ⟹ XP_040135958

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	9,941,738 - 10,029,149 (+)	NCBI


Protein RefSeqs	XP_040135958	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000002298.3
GenBank Protein	KAG3255801	(Get FASTA)	NCBI Sequence Viewer
	KAG3255802	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_040135958 ⟸ XM_040280024
- UniProtKB:	I3M0P1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000002298 ⟸ ENSSTOT00000002568

Protein Domains

DUF4745

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002560	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002568.3	UniProtKB/TrEMBL
InterPro	DUF4745	UniProtKB/TrEMBL
	GARRE1	UniProtKB/TrEMBL
NCBI Gene	Kiaa0355	ENTREZGENE
PANTHER	GRANULE ASSOCIATED RAC AND RHOG EFFECTOR PROTEIN 1	UniProtKB/TrEMBL
	PTHR15703	UniProtKB/TrEMBL
Pfam	DUF4745	UniProtKB/TrEMBL
UniProt	I3M0P1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-03-10	Garre1	granule associated Rac and RHOG effector 1	Kiaa0355	KIAA0355 ortholog	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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