Slc7a9 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 9) - Rat Genome Database

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Gene: Slc7a9 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 9) Mus musculus
Analyze
Symbol: Slc7a9
Name: solute carrier family 7 (cationic amino acid transporter, y+ system), member 9
RGD ID: 734404
MGI Page MGI
Description: Predicted to enable L-cystine transmembrane transporter activity; broad specificity neutral L-amino acid:basic L-amino acid antiporter activity; and protein heterodimerization activity. Predicted to be involved in L-cystine transport and amino acid transmembrane transport. Located in brush border membrane. Is expressed in several structures, including metanephros and midgut. Used to study cystinuria. Human ortholog(s) of this gene implicated in cystinuria. Orthologous to human SLC7A9 (solute carrier family 7 member 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B(0,+)-type amino acid transporter 1; b(0,+)AT; b, + amino acid transporter; b, +AT; CSN; CSNU3; glycoprotein-associated amino acid transporter b0,+AT1; solute carrier family 7 member 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,148,152 - 35,165,459 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl735,148,221 - 35,165,461 (+)EnsemblGRCm39 Ensembl
GRCm38735,448,727 - 35,466,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,448,796 - 35,466,036 (+)EnsemblGRCm38mm10GRCm38
MGSCv37736,234,198 - 36,251,018 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36735,157,939 - 35,174,759 (+)NCBIMGSCv36mm8
Celera730,576,815 - 30,593,617 (+)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Non-type I cystinuria caused by mutations in SLC7A9, encoding a subunit (bo,+AT) of rBAT. International Cystinuria Consortium. Feliubadalo L, etal., Nat Genet 1999 Sep;23(1):52-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10588648   PMID:10799513   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12167606   PMID:12477932   PMID:12915471   PMID:14610273   PMID:15044460   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:16358225   PMID:17596531   PMID:21267068   PMID:21873635   PMID:24107421   PMID:32873097   PMID:34573056   PMID:35988091   PMID:37418888  


Genomics

Comparative Map Data
Slc7a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,148,152 - 35,165,459 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl735,148,221 - 35,165,461 (+)EnsemblGRCm39 Ensembl
GRCm38735,448,727 - 35,466,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,448,796 - 35,466,036 (+)EnsemblGRCm38mm10GRCm38
MGSCv37736,234,198 - 36,251,018 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36735,157,939 - 35,174,759 (+)NCBIMGSCv36mm8
Celera730,576,815 - 30,593,617 (+)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.37NCBI
SLC7A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381932,830,511 - 32,869,767 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1932,830,509 - 32,869,767 (-)EnsemblGRCh38hg38GRCh38
GRCh371933,321,417 - 33,360,673 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,013,262 - 38,052,512 (-)NCBINCBI36Build 36hg18NCBI36
Build 341938,013,261 - 38,052,512NCBI
Celera1930,015,026 - 30,054,305 (-)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1929,823,977 - 29,863,313 (-)NCBIHuRef
CHM1_11933,322,523 - 33,361,817 (-)NCBICHM1_1
T2T-CHM13v2.01935,349,240 - 35,388,495 (-)NCBIT2T-CHM13v2.0
Slc7a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8197,246,253 - 97,269,546 (+)NCBIGRCr8
mRatBN7.2188,109,517 - 88,132,653 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,110,644 - 88,132,641 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,515,663 - 93,538,236 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,981,616 - 102,004,191 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0195,273,953 - 95,296,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,709,034 - 91,738,492 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,716,383 - 91,738,494 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,836,837 - 92,865,759 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,976,440 - 87,999,102 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1188,054,550 - 88,077,212 (+)NCBI
Celera182,459,876 - 82,482,526 (+)NCBICelera
Cytogenetic Map1q21NCBI
Slc7a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554685,112,161 - 5,200,266 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554685,112,057 - 5,201,272 (+)NCBIChiLan1.0ChiLan1.0
SLC7A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22038,803,634 - 38,841,120 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11940,802,790 - 40,840,197 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01929,753,265 - 29,793,871 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11938,499,106 - 38,538,750 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1938,499,106 - 38,538,750 (-)Ensemblpanpan1.1panPan2
SLC7A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,205,833 - 119,229,054 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,205,833 - 119,229,054 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,605,982 - 118,629,205 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,806,922 - 119,830,085 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,806,922 - 119,830,085 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,370,036 - 119,393,192 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,990,490 - 119,013,672 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01120,050,385 - 120,073,608 (+)NCBIUU_Cfam_GSD_1.0
Slc7a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093498,701,341 - 8,730,010 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365702,917,709 - 2,944,158 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365702,917,389 - 2,944,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl642,669,093 - 42,714,267 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1642,664,795 - 42,706,113 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,108,038 - 38,212,965 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC7A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1627,877,089 - 27,919,268 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl627,876,364 - 27,908,098 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660735,462,017 - 5,493,104 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc7a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247947,761,511 - 7,792,473 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc7a9
491 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:505
Count of miRNA genes:306
Interacting mature miRNAs:339
Transcripts:ENSMUST00000032703, ENSMUST00000118383, ENSMUST00000118969, ENSMUST00000141245, ENSMUST00000141905, ENSMUST00000147026
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001199015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001199016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA104782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC151535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF192310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ249198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE136295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032703   ⟹   ENSMUSP00000032703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl735,148,595 - 35,165,461 (+)Ensembl
GRCm38.p6 Ensembl735,449,170 - 35,466,036 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118383   ⟹   ENSMUSP00000113181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl735,148,221 - 35,165,461 (+)Ensembl
GRCm38.p6 Ensembl735,448,796 - 35,466,036 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118969   ⟹   ENSMUSP00000112726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl735,148,462 - 35,165,461 (+)Ensembl
GRCm38.p6 Ensembl735,449,037 - 35,466,036 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141245   ⟹   ENSMUSP00000117352
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl735,149,261 - 35,155,017 (+)Ensembl
GRCm38.p6 Ensembl735,449,836 - 35,455,592 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl735,148,523 - 35,149,495 (+)Ensembl
GRCm38.p6 Ensembl735,449,098 - 35,450,070 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl735,148,525 - 35,165,428 (+)Ensembl
GRCm38.p6 Ensembl735,449,100 - 35,466,003 (+)Ensembl
RefSeq Acc Id: NM_001199015   ⟹   NP_001185944
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,148,517 - 35,165,459 (+)NCBI
GRCm38735,449,092 - 35,466,034 (+)NCBI
Celera730,576,728 - 30,593,652 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001199016   ⟹   NP_001185945
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,148,523 - 35,165,459 (+)NCBI
GRCm38735,449,098 - 35,466,034 (+)NCBI
Celera730,576,728 - 30,593,652 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_021291   ⟹   NP_067266
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,148,604 - 35,165,459 (+)NCBI
GRCm38735,449,179 - 35,466,034 (+)NCBI
MGSCv37736,234,198 - 36,251,018 (+)RGD
Celera730,576,728 - 30,593,652 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006540044   ⟹   XP_006540107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,148,153 - 35,165,428 (+)NCBI
GRCm38735,448,728 - 35,466,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006540045   ⟹   XP_006540108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,148,152 - 35,165,428 (+)NCBI
GRCm38735,448,727 - 35,466,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006540046   ⟹   XP_006540109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,149,223 - 35,165,428 (+)NCBI
GRCm38735,449,798 - 35,466,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006540047   ⟹   XP_006540110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,148,153 - 35,157,201 (+)NCBI
GRCm38735,448,728 - 35,457,776 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250591   ⟹   XP_011248893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,148,152 - 35,165,428 (+)NCBI
GRCm38735,448,727 - 35,466,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250592   ⟹   XP_011248894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,148,604 - 35,165,428 (+)NCBI
GRCm38735,449,179 - 35,466,003 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_067266   ⟸   NM_021291
- UniProtKB: Q9QXA6 (UniProtKB/Swiss-Prot),   Q3UQE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185944   ⟸   NM_001199015
- UniProtKB: Q9QXA6 (UniProtKB/Swiss-Prot),   Q3UQE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185945   ⟸   NM_001199016
- UniProtKB: Q9QXA6 (UniProtKB/Swiss-Prot),   Q3UQE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006540108   ⟸   XM_006540045
- Peptide Label: isoform X1
- UniProtKB: Q9QXA6 (UniProtKB/Swiss-Prot),   Q3UQE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006540107   ⟸   XM_006540044
- Peptide Label: isoform X1
- UniProtKB: Q9QXA6 (UniProtKB/Swiss-Prot),   Q3UQE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006540110   ⟸   XM_006540047
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006540109   ⟸   XM_006540046
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011248893   ⟸   XM_011250591
- Peptide Label: isoform X1
- UniProtKB: Q9QXA6 (UniProtKB/Swiss-Prot),   Q3UQE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011248894   ⟸   XM_011250592
- Peptide Label: isoform X1
- UniProtKB: Q9QXA6 (UniProtKB/Swiss-Prot),   Q3UQE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000032703   ⟸   ENSMUST00000032703
RefSeq Acc Id: ENSMUSP00000113181   ⟸   ENSMUST00000118383
RefSeq Acc Id: ENSMUSP00000112726   ⟸   ENSMUST00000118969
RefSeq Acc Id: ENSMUSP00000117352   ⟸   ENSMUST00000141245

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QXA6-F1-model_v2 AlphaFold Q9QXA6 1-487 view protein structure

Promoters
RGD ID:8663663
Promoter ID:EPDNEW_M9863
Type:initiation region
Name:Slc7a9_2
Description:Mus musculus solute carrier family 7 (cationic amino acid transporter,y+ system), member 9 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9864  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38735,449,066 - 35,449,126EPDNEW
RGD ID:8663665
Promoter ID:EPDNEW_M9864
Type:multiple initiation site
Name:Slc7a9_1
Description:Mus musculus solute carrier family 7 (cationic amino acid transporter,y+ system), member 9 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9863  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38735,449,229 - 35,449,289EPDNEW
RGD ID:6842064
Promoter ID:MM_KWN:50029
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000118383,   ENSMUST00000118969,   OTTMUST00000078323,   OTTMUST00000078325,   OTTMUST00000078327,   OTTMUST00000078328
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36736,234,031 - 36,234,782 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1353656 AgrOrtholog
Ensembl Genes ENSMUSG00000030492 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032703 ENTREZGENE
  ENSMUST00000032703.10 UniProtKB/Swiss-Prot
  ENSMUST00000118383 ENTREZGENE
  ENSMUST00000118383.8 UniProtKB/Swiss-Prot
  ENSMUST00000118969 ENTREZGENE
  ENSMUST00000118969.8 UniProtKB/Swiss-Prot
  ENSMUST00000141245.2 UniProtKB/TrEMBL
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AA/rel_permease1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:30962 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1353656 ENTREZGENE
NCBI Gene 30962 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B(0,+)-TYPE AMINO ACID TRANSPORTER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AA_permease_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc7a9 PhenoGen
PIRSF AA_transporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt BAT1_MOUSE UniProtKB/Swiss-Prot
  F7AUJ6_MOUSE UniProtKB/TrEMBL
  Q3UQE3 ENTREZGENE, UniProtKB/TrEMBL
  Q9QXA6 ENTREZGENE