Hif3a (hypoxia inducible factor 3, alpha subunit) - Rat Genome Database

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Gene: Hif3a (hypoxia inducible factor 3, alpha subunit) Mus musculus
Analyze
Symbol: Hif3a
Name: hypoxia inducible factor 3, alpha subunit
RGD ID: 732650
MGI Page MGI
Description: Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within response to hypoxia and transcription by RNA polymerase II. Located in mitochondrion and nuclear speck. Is expressed in several structures, including central nervous system; genitourinary system; and lung. Orthologous to human HIF3A (hypoxia inducible factor 3 subunit alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: basic-helix-loop-helix-PAS protein MOP7; bHLHe1; bHLHe17; HIF-3-alpha; HIF3-alpha; HIF3-alpha-1; hypoxia inducible factor three alpha; hypoxia-inducible factor 3-alpha; inhibitory PAS domain protein; Ipas; member of PAS protein 7; MO; MOP7; N; neonatal and embryonic PAS; NEPAS
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,764,918 - 16,796,352 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,765,432 - 16,796,352 (-)EnsemblGRCm39 Ensembl
GRCm38717,030,993 - 17,062,427 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl717,031,507 - 17,062,427 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,616,342 - 17,647,776 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36716,194,256 - 16,215,201 (-)NCBIMGSCv36mm8
Celera714,238,445 - 14,270,033 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,10-phenanthroline  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-palmitoylglycerol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (EXP)
4-nitrophenol  (EXP)
5-chloro-7-iodoquinolin-8-ol  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
allethrin  (ISO)
ammonium chloride  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bromobenzene  (ISO)
buta-1,3-diene  (EXP)
C60 fullerene  (ISO)
carbon nanotube  (EXP)
chloroprene  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
cobalt(2+) sulfate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
delphinidin  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (ISO)
dichloroacetic acid  (EXP)
dicrotophos  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
diquat  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
folic acid  (EXP)
graphite  (ISO)
GW 4064  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP,ISO)
menadione  (ISO)
mercury atom  (ISO)
mercury dibromide  (ISO)
mercury(0)  (ISO)
methotrexate  (ISO)
metyrapone  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
paraquat  (EXP)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrethrins  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sunitinib  (ISO)
thimerosal  (ISO)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA,ISO)
cytoplasm  (IDA)
cytosol  (IEA,ISO)
mitochondrion  (IDA,IEA)
nuclear speck  (IDA,IEA)
nucleoplasm  (ISO)
nucleus  (IC,IDA)
plasma membrane  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. First evidence of aryl hydrocarbon receptor as a druggable target in hypertension induced by chronic intermittent hypoxia. Coelho NR, etal., Pharmacol Res. 2020 Sep;159:104869. doi: 10.1016/j.phrs.2020.104869. Epub 2020 May 19.
2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3. HIF1alpha and HIF2alpha: sibling rivalry in hypoxic tumour growth and progression. Keith B, etal., Nat Rev Cancer. 2011 Dec 15;12(1):9-22. doi: 10.1038/nrc3183.
4. Differential expression of three hypoxia-inducible factor-alpha subunits in pulmonary arteries of rat with hypoxia-induced hypertension. Li QF and Dai AG, Acta Biochim Biophys Sin (Shanghai). 2005 Oct;37(10):665-72.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9840812   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11734856   PMID:12119283   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16966370  
PMID:17125738   PMID:17609113   PMID:18070924   PMID:18287559   PMID:18557763   PMID:18635823   PMID:19642194   PMID:20495570   PMID:21267068   PMID:21338581   PMID:21404626   PMID:21546903  
PMID:21873635   PMID:22094019   PMID:22711520   PMID:22988430   PMID:23451260   PMID:24952961   PMID:25340332   PMID:25626335   PMID:25847716   PMID:29054108   PMID:29986746   PMID:30571485  
PMID:30718289   PMID:31583736   PMID:31652442   PMID:34826399   PMID:35242281   PMID:35347545   PMID:38717999  


Genomics

Comparative Map Data
Hif3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,764,918 - 16,796,352 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,765,432 - 16,796,352 (-)EnsemblGRCm39 Ensembl
GRCm38717,030,993 - 17,062,427 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl717,031,507 - 17,062,427 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,616,342 - 17,647,776 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36716,194,256 - 16,215,201 (-)NCBIMGSCv36mm8
Celera714,238,445 - 14,270,033 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
HIF3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,297,042 - 46,343,433 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,297,042 - 46,343,433 (+)EnsemblGRCh38hg38GRCh38
GRCh371946,800,299 - 46,846,690 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,492,145 - 51,538,530 (+)NCBINCBI36Build 36hg18NCBI36
Celera1943,605,284 - 43,651,680 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1943,228,311 - 43,274,715 (+)NCBIHuRef
CHM1_11946,802,171 - 46,848,539 (+)NCBICHM1_1
T2T-CHM13v2.01949,124,507 - 49,170,893 (+)NCBIT2T-CHM13v2.0
Hif3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,846,196 - 86,878,527 (-)NCBIGRCr8
mRatBN7.2177,718,110 - 77,750,448 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,722,471 - 77,749,758 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,102,824 - 83,130,220 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,666,890 - 91,694,278 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,857,927 - 84,885,322 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,976,318 - 78,997,869 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,976,318 - 78,997,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0180,223,828 - 80,245,130 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,377,465 - 77,408,704 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,455,581 - 77,486,815 (-)NCBI
Celera172,207,606 - 72,229,353 (-)NCBICelera
Cytogenetic Map1q21NCBI
Hif3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574495,953 - 518,397 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955574490,702 - 520,867 (+)NCBIChiLan1.0ChiLan1.0
HIF3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,400,319 - 52,483,212 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11954,307,702 - 54,354,329 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01943,243,290 - 43,326,146 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,815,809 - 51,862,039 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,815,809 - 51,862,039 (+)Ensemblpanpan1.1panPan2
HIF3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,479,456 - 109,504,271 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,479,128 - 109,504,274 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,954,428 - 108,983,166 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,001,737 - 110,030,481 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,001,055 - 110,030,504 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,677,813 - 109,706,546 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,312,160 - 109,341,081 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,181,254 - 110,209,992 (-)NCBIUU_Cfam_GSD_1.0
Hif3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934918,676,862 - 18,705,014 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936664294,975 - 323,149 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936664296,288 - 323,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIF3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,342,885 - 52,373,058 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,342,893 - 52,376,339 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,766,624 - 47,782,160 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HIF3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,672,580 - 39,718,944 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,679,627 - 39,713,227 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607319,350,237 - 19,397,181 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hif3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,128,285 - 7,157,494 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,128,285 - 7,157,506 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2201
Count of miRNA genes:765
Interacting mature miRNAs:968
Transcripts:ENSMUST00000037762, ENSMUST00000108492, ENSMUST00000139224, ENSMUST00000153833
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse

Markers in Region
D7Mit190  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38717,059,007 - 17,059,154UniSTSGRCm38
MGSCv37717,644,356 - 17,644,503UniSTSGRCm37
Celera714,266,637 - 14,266,782UniSTS
Cytogenetic Map7A2UniSTS
cM Map72.5UniSTS
Whitehead Genetic72.2UniSTS
Whitehead/MRC_RH7232.79UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000037762   ⟹   ENSMUSP00000048248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,769,659 - 16,790,604 (-)Ensembl
GRCm38.p6 Ensembl717,035,734 - 17,056,679 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108492   ⟹   ENSMUSP00000104132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,765,432 - 16,796,352 (-)Ensembl
GRCm38.p6 Ensembl717,031,507 - 17,062,427 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139224   ⟹   ENSMUSP00000146258
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,782,776 - 16,784,588 (-)Ensembl
GRCm38.p6 Ensembl717,048,851 - 17,050,663 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153833   ⟹   ENSMUSP00000117728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,785,879 - 16,796,309 (-)Ensembl
GRCm38.p6 Ensembl717,051,954 - 17,062,384 (-)Ensembl
RefSeq Acc Id: NM_001162950   ⟹   NP_001156422
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,764,918 - 16,796,352 (-)NCBI
GRCm38717,030,993 - 17,062,427 (-)ENTREZGENE
MGSCv37717,616,342 - 17,647,776 (-)RGD
Celera714,238,445 - 14,270,033 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_016868   ⟹   NP_058564
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,764,918 - 16,790,604 (-)NCBI
GRCm38717,030,993 - 17,056,679 (-)NCBI
MGSCv37717,616,342 - 17,647,776 (-)RGD
Celera714,238,445 - 14,270,033 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011250628   ⟹   XP_011248930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,764,997 - 16,795,076 (-)NCBI
GRCm38717,031,072 - 17,061,151 (-)NCBI
Sequence:
RefSeq Acc Id: NP_058564   ⟸   NM_016868
- Peptide Label: isoform 2
- UniProtKB: Q9QX54 (UniProtKB/Swiss-Prot),   Q8VHR1 (UniProtKB/Swiss-Prot),   Q3UN40 (UniProtKB/Swiss-Prot),   E9QLB1 (UniProtKB/Swiss-Prot),   A1IM61 (UniProtKB/Swiss-Prot),   Q9Z2I5 (UniProtKB/Swiss-Prot),   Q0VBL6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156422   ⟸   NM_001162950
- Peptide Label: isoform 1
- UniProtKB: Q0VBL6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011248930   ⟸   XM_011250628
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000146258   ⟸   ENSMUST00000139224
Ensembl Acc Id: ENSMUSP00000104132   ⟸   ENSMUST00000108492
Ensembl Acc Id: ENSMUSP00000048248   ⟸   ENSMUST00000037762
Ensembl Acc Id: ENSMUSP00000117728   ⟸   ENSMUST00000153833
Protein Domains
bHLH   PAS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q0VBL6-F1-model_v2 AlphaFold Q0VBL6 1-662 view protein structure

Promoters
RGD ID:6891974
Promoter ID:EPDNEW_M9433
Type:multiple initiation site
Name:Hif3a_1
Description:Mus musculus hypoxia inducible factor 3, alpha subunit , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38717,062,413 - 17,062,473EPDNEW
RGD ID:6841279
Promoter ID:MM_KWN:48957
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Lung
Transcripts:NM_016868
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36717,641,446 - 17,641,946 (-)MPROMDB
RGD ID:6848147
Promoter ID:MM_ACW:43653
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:HIF3A.DSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36717,645,861 - 17,646,361 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859778 AgrOrtholog
Ensembl Genes ENSMUSG00000004328 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037762 ENTREZGENE
  ENSMUST00000037762.11 UniProtKB/Swiss-Prot
  ENSMUST00000108492 ENTREZGENE
  ENSMUST00000108492.9 UniProtKB/Swiss-Prot
  ENSMUST00000139224.3 UniProtKB/TrEMBL
  ENSMUST00000153833.2 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HIF_alpha_subunit UniProtKB/Swiss-Prot
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS_fold UniProtKB/Swiss-Prot
KEGG Report mmu:53417 UniProtKB/Swiss-Prot
MGD MGI:1859778 ENTREZGENE
NCBI Gene 53417 ENTREZGENE
PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HYPOXIA-INDUCIBLE FACTOR 3-ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HIF-1 UniProtKB/Swiss-Prot
  PAS UniProtKB/Swiss-Prot
  PAS_11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hif3a PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAS UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RQ59_MOUSE UniProtKB/TrEMBL
  A1IM61 ENTREZGENE
  D3Z377_MOUSE UniProtKB/TrEMBL
  E9QLB1 ENTREZGENE
  HIF3A_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UN40 ENTREZGENE
  Q8VHR1 ENTREZGENE
  Q9QX54 ENTREZGENE
  Q9Z2I5 ENTREZGENE
UniProt Secondary A1IM61 UniProtKB/Swiss-Prot
  E9QLB1 UniProtKB/Swiss-Prot
  Q3UN40 UniProtKB/Swiss-Prot
  Q8VHR1 UniProtKB/Swiss-Prot
  Q9QX54 UniProtKB/Swiss-Prot
  Q9Z2I5 UniProtKB/Swiss-Prot