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Gene: Vstm2b (V-set and transmembrane domain containing 2B) Mus musculus

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Symbol:

Vstm2b

Name:

V-set and transmembrane domain containing 2B

RGD ID:

1314735

MGI Page

MGI

Description:

Predicted to be active in membrane. Is expressed in brain and spinal cord mantle layer. Orthologous to human VSTM2B (V-set and transmembrane domain containing 2B).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2900093B09Rik; AB030198; V-set and transmembrane domain-containing protein 2B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	40,547,614 - 40,579,468 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	40,547,752 - 40,580,018 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	40,898,011 - 40,930,044 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	40,898,328 - 40,930,594 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	48,154,648 - 48,185,338 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	40,672,431 - 40,703,121 (+)	NCBI		MGSCv36	mm8
Celera	7	35,862,470 - 35,893,646 (+)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	27.88	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vstm2b	Mouse	1,2-dichloroethane	decreases expression	EXP		6480464	ethylene dichloride results in decreased expression of VSTM2B mRNA	CTD	PMID:28960355
Vstm2b	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of VSTM2B mRNA	CTD	PMID:24680724
Vstm2b	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Vstm2b (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of VSTM2B mRNA	CTD	PMID:32109520
Vstm2b	Mouse	2,3,7,8-Tetrachlorodibenzofuran	decreases expression	ISO	Vstm2b (Rattus norvegicus)	6480464	2 more ...	CTD	PMID:32109520
Vstm2b	Mouse	2,4-dibromophenyl 2,4,5-tribromophenyl ether	affects expression	EXP		6480464	2 more ...	CTD	PMID:38648751
Vstm2b	Mouse	6-propyl-2-thiouracil	increases expression	ISO	Vstm2b (Rattus norvegicus)	6480464	Propylthiouracil results in increased expression of VSTM2B mRNA	CTD	PMID:24780913 more ...
Vstm2b	Mouse	benzo[a]pyrene	increases expression	EXP		6480464	Benzo(a)pyrene results in increased expression of VSTM2B mRNA	CTD	PMID:22228805
Vstm2b	Mouse	benzo[a]pyrene	increases methylation	ISO	VSTM2B (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of VSTM2B exon and Benzo(a)pyrene results in increased methylation of VSTM2B promoter	CTD	PMID:27901495
Vstm2b	Mouse	bisphenol A	decreases expression	ISO	Vstm2b (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of VSTM2B mRNA	CTD	PMID:25181051 and PMID:30816183
Vstm2b	Mouse	cadmium dichloride	increases methylation	ISO	Vstm2b (Rattus norvegicus)	6480464	Cadmium Chloride results in increased methylation of VSTM2B promoter	CTD	PMID:22457795
Vstm2b	Mouse	crocidolite asbestos	affects expression	EXP		6480464	Asbestos and Crocidolite affects the expression of VSTM2B mRNA	CTD	PMID:19446018
Vstm2b	Mouse	folic acid	decreases expression	EXP		6480464	Folic Acid results in decreased expression of VSTM2B mRNA	CTD	PMID:25629700
Vstm2b	Mouse	ivermectin	decreases expression	ISO	VSTM2B (Homo sapiens)	6480464	Ivermectin results in decreased expression of VSTM2B protein	CTD	PMID:32959892
Vstm2b	Mouse	lead(0)	affects expression	ISO	VSTM2B (Homo sapiens)	6480464	Lead affects the expression of VSTM2B mRNA	CTD	PMID:28903495
Vstm2b	Mouse	lead(0)	affects methylation	ISO	VSTM2B (Homo sapiens)	6480464	Lead affects the methylation of VSTM2B gene	CTD	PMID:31636367
Vstm2b	Mouse	N-methyl-4-phenylpyridinium	decreases expression	ISO	VSTM2B (Homo sapiens)	6480464	1-Methyl-4-phenylpyridinium results in decreased expression of VSTM2B mRNA	CTD	PMID:24810058
Vstm2b	Mouse	perfluorooctane-1-sulfonic acid	increases expression	ISO	VSTM2B (Homo sapiens)	6480464	perfluorooctane sulfonic acid results in increased expression of VSTM2B mRNA	CTD	PMID:25812627
Vstm2b	Mouse	perfluorooctanoic acid	increases expression	ISO	VSTM2B (Homo sapiens)	6480464	perfluorooctanoic acid results in increased expression of VSTM2B mRNA	CTD	PMID:25812627
Vstm2b	Mouse	sodium arsenite	increases expression	EXP		6480464	sodium arsenite results in increased expression of VSTM2B mRNA	CTD	PMID:37682722
Vstm2b	Mouse	titanium dioxide	decreases methylation	EXP		6480464	titanium dioxide results in decreased methylation of VSTM2B gene	CTD	PMID:35295148
Vstm2b	Mouse	titanium dioxide	increases methylation	EXP		6480464	titanium dioxide results in increased methylation of VSTM2B gene	CTD	PMID:35295148

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vstm2b	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vstm2b	Mouse	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	2290270		UniProt	GO_REF:0000044
Vstm2b	Mouse	membrane	is_active_in	IBA	PANTHER:PTN000258543 more ...	2290270		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vstm2b	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:10679242	PMID:11042159	PMID:11076861	PMID:16141072	PMID:16141073	PMID:21267068	PMID:21873635	PMID:25826454	PMID:31847788

Vstm2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	40,547,614 - 40,579,468 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	40,547,752 - 40,580,018 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	40,898,011 - 40,930,044 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	40,898,328 - 40,930,594 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	48,154,648 - 48,185,338 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	40,672,431 - 40,703,121 (+)	NCBI		MGSCv36	mm8
Celera	7	35,862,470 - 35,893,646 (+)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	27.88	NCBI

VSTM2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	29,525,418 - 29,564,551 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	29,525,994 - 29,564,551 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	30,016,325 - 30,055,458 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	34,708,668 - 34,747,070 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	26,715,235 - 26,753,005 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI
HuRef	19	26,528,987 - 26,567,029 (+)	NCBI		HuRef
CHM1_1	19	30,018,868 - 30,056,624 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	32,051,016 - 32,090,146 (+)	NCBI		T2T-CHM13v2.0

Vstm2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	101,728,708 - 101,757,122 (+)	NCBI		GRCr8
mRatBN7.2	1	92,592,070 - 92,620,491 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	92,592,070 - 92,620,491 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	97,994,572 - 98,022,973 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	106,460,272 - 106,488,673 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	99,752,857 - 99,781,254 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	97,632,473 - 97,660,962 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	97,632,473 - 97,660,962 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	98,716,586 - 98,744,919 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	92,438,596 - 92,466,532 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	92,404,256 - 92,544,532 (+)	NCBI
Celera	1	86,915,860 - 86,944,359 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

Vstm2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	8,024,159 - 8,054,360 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	8,024,356 - 8,054,229 (-)	NCBI	ChiLan1.0	ChiLan1.0

VSTM2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	35,506,775 - 35,545,571 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	37,503,582 - 37,542,293 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	26,454,330 - 26,493,115 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1 Ensembl	19	35,217,904 - 35,257,097 (+)	Ensembl	panpan1.1		panPan2

VSTM2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	121,860,643 - 121,879,797 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	121,860,709 - 121,880,030 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	121,163,194 - 121,182,567 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	122,487,392 - 122,506,761 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	122,487,696 - 122,507,500 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	122,069,144 - 122,088,519 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	121,676,981 - 121,696,043 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	122,740,755 - 122,760,230 (-)	NCBI		UU_Cfam_GSD_1.0

Vstm2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	5,873,610 - 5,898,743 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	5,746,854 - 5,772,272 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	5,747,359 - 5,772,266 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VSTM2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	39,671,131 - 39,700,449 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	39,670,069 - 39,700,473 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	34,963,948 - 34,993,566 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VSTM2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	24,590,976 - 24,631,921 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	24,592,739 - 24,597,007 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	2,120,476 - 2,159,707 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vstm2b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	4,736,044 - 4,762,221 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	4,736,143 - 4,762,412 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Vstm2b
1899 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	109
Count of miRNA genes:	99
Interacting mature miRNAs:	107
Transcripts:	ENSMUST00000044705
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25314307	Mlh1fc2_m	MLH1 foci count 2 (mouse)					7	6502999	133501729	Mouse
4141566	Femwf8_m	femur work to failure 8 (mouse)			Not determined			13032485	47032621	Mouse
1301969	Lbw5_m	lupus NZB x NZW 5 (mouse)			Not determined		7	26847615	60851775	Mouse
38501071	Stsl6_m	Salmonella typhimurium susceptibility locus 6 (mouse)					7	34199425	51149748	Mouse
1357586	Mdmsc3_m	modifier of muscularity 3 (mouse)			Not determined		7	34447869	68448018	Mouse
38501068	Tip1_m	tuberculosis immunophenotype 1, spleen CFU (mouse)					7	3602999	72549748	Mouse
39128210	Lwq19_m	liver weight QTL 19 (mouse)					7	33497727	58148965	Mouse
25314314	Sccor1_m	synaptonemal complex length to mean MLH1 count ratio 1 (mouse)					7	13333925	47349748	Mouse
1357469	Kidq5_m	kidney weight QTL 5 (mouse)			Not determined		7	33497727	58148965	Mouse
1301082	Bbaa16_m	B.burgdorferi-associated arthritis 16 (mouse)			Not determined		7	36280015	116416877	Mouse
4142003	W3q10_m	weight 3 weeks QTL 10 (mouse)			Not determined			33497727	58148965	Mouse
12790989	Tgl6_m	triglyceride 6 (mouse)					7	27540549	61540549	Mouse
1559000	Ossc1_m	osteosarcoma susceptibility 1 (mouse)			Not determined		7	34053025	68053223	Mouse
11522751	Cocia17_m	cocaine-induced activity, QTL 17 (mouse)					7	13135204	47135204	Mouse
12792978	Fbmd3_m	femoral bone mineral density 3, females only (mouse)					7	7050288	142367832	Mouse
4141805	Sle19_m	systematic lupus erythematosus susceptibility 19 (mouse)			Not determined			30032485	81135653	Mouse
1357634	Splq7_m	spleen weight QTL 7 (mouse)			Not determined		7	33497727	58148965	Mouse
1357699	Nhdlq6_m	non-HDL QTL 6 (mouse)			Not determined		7	9988867	43988984	Mouse
1300996	Aorls2_m	aortic lesion size 2 (mouse)			Not determined		7	32394532	66394681	Mouse
10449158	Eosn3_m	eosinophil differential 3 (mouse)					7	12480877	46480877	Mouse
1301514	Rigs1_m	radiation induced gastroschisis 1 (mouse)			Not determined		7	36280015	92394346	Mouse
1300878	Skts1_m	skin tumor susceptibility 1 (mouse)			Not determined		7	37891386	71891582	Mouse
1301709	Bdt4_m	bone density traits 4 (mouse)			Not determined		7	22888572	56888716	Mouse
1300722	Sle3_m	systemic lupus erythmatosus susceptibility 3 (mouse)			Not determined		7	3511728	87142720	Mouse
12904742	Litsq2_m	litter size QTL 2 (mouse)					7	22673887	56674033	Mouse
1301175	Ap7q_m	alcohol preference 7 QTL (mouse)			Not determined		7	31714845	65715077	Mouse
1300791	Abbp3_m	A/J and C57BL/6 blood pressure 3 (mouse)			Not determined		7	39673887	103510010	Mouse
1301622	Eae12_m	susceptibility to experimental allergic encephalomyelitis 12 (mouse)			Not determined		7	19280015	53280104	Mouse
11354952	Pdcc1_m	plasmacytoid dentritic cell compartment 1 (mouse)					7	23066531	57066531	Mouse
10402488	Dipa2_m	drug induced psychomotor activation 2 (mouse)			Not determined		7	38421548	72421684	Mouse
4142102	Tailq5_m	tail length QTL 5 (mouse)			Not determined			33497727	58148965	Mouse
4141909	W10q18_m	weight 10 weeks QTL 18 (mouse)			Not determined			33497727	58148965	Mouse
10449139	Eosn1_m	eosinophil differential 1 (mouse)					7	12480877	46480877	Mouse
26884404	Huml1_m	humerus length 1, 5 week (mouse)					7	30199425	108999207	Mouse
1301052	Bhr6_m	bronchial hyperresponsiveness 6 (mouse)			Not determined		7	19842250	53842367	Mouse
1357883	Epfq5_m	epididymal fat pad weight QTL 5 (mouse)			Not determined		7	33497727	58148965	Mouse
10045622	Heal20_m	wound healing/regeneration 20 (mouse)			Not determined		7	34316887	68317043	Mouse
1301158	Eae4_m	susceptibility to experimental allergic encephalomyelitis 4 (mouse)			Not determined		7	19147398	141919804	Mouse
4142218	W6q17_m	weight 6 weeks QTL 17 (mouse)			Not determined			33497727	58148965	Mouse
10412199	Sst2_m	susceptibility to tuberculosis 2 (mouse)			Not determined		7	18728794	119485380	Mouse
1558893	Spir1_m	Streptococcus pneumoniae infection resistance 1 (mouse)			Not determined		7	10305798	44305936	Mouse
25314303	Vmm4_m	variable multisystem mineralization 4, kidney (mouse)					7	37299425	87049208	Mouse
1559016	Drsi_m	DCC-related Spp1 induction (mouse)			Not determined		7	16637293	49159331	Mouse
25314301	Vmm3_m	variable multisystem mineralization 3, lung (mouse)					7	37299425	72049748	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001418631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001418632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001418634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001418635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_021387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_184788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_184789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006541032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB030198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC136717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK020370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000044705 ⟹ ENSMUSP00000044002

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	40,547,752 - 40,580,018 (+)	Ensembl
GRCm38.p6 Ensembl	7	40,898,328 - 40,930,594 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000186352 ⟹ ENSMUSP00000140241

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	40,549,553 - 40,552,225 (+)	Ensembl
GRCm38.p6 Ensembl	7	40,900,129 - 40,902,801 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000205845 ⟹ ENSMUSP00000146231

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	40,548,702 - 40,579,392 (+)	Ensembl
GRCm38.p6 Ensembl	7	40,899,278 - 40,929,968 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000206223 ⟹ ENSMUSP00000145703

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	40,548,756 - 40,552,212 (+)	Ensembl
GRCm38.p6 Ensembl	7	40,899,332 - 40,902,788 (+)	Ensembl

RefSeq Acc Id:

NM_001418631 ⟹ NP_001405560

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	40,548,184 - 40,579,468 (+)	NCBI

RefSeq Acc Id:

NM_001418632 ⟹ NP_001405561

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	40,547,614 - 40,579,468 (+)	NCBI

RefSeq Acc Id:

NM_001418634 ⟹ NP_001405563

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	40,547,614 - 40,579,468 (+)	NCBI

RefSeq Acc Id:

NM_001418635 ⟹ NP_001405564

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	40,547,614 - 40,579,468 (+)	NCBI

RefSeq Acc Id:

NM_021387 ⟹ NP_067362

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	40,548,184 - 40,579,468 (+)	NCBI
GRCm38	7	40,899,278 - 40,929,968 (+)	NCBI
MGSCv37	7	48,154,648 - 48,185,338 (+)	RGD
Celera	7	35,862,470 - 35,893,646 (+)	RGD
cM Map	7		ENTREZGENE

Sequence:

show sequence

AGCCGGAGCTCGAGCCGGAGCCGAGCCCAAGCTGCCGCCGCCGCCGCCTCTCCGCGCCGGGCCCCCGCCGCCGCCGCAACCCTGCGGGAGATGGAACAGCGGAACCGGCTCGGCGCCCTCGGATACCT
GCTACCTCTGCTACTGCACAGCCTGCTGCTCTTCGTGGCCGACGCTACATTCACCGAAGTCCCCAAAGATGTAACCGTGCGAGAGGGTGACGATATCGAAATGCCCTGCGCGTTCCGGGCCAGCGGAG
CCACCTCTTACTCGCTGGAGATTCAGTGGTGGTACCTCAAGGAGCCTCCCCGGGAGCTGTTACACGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGGTAACAAATAAGGATGCAACTAAAATC
AGCACCGTGCGAGTCCAGGGCAATGACATCTCACACCGGCTTCGGCTGTCCGCCGTACGATTGCAGGACGAAGGTGTTTATGAATGTCGCGTTTCGGACTACAGCGATGATGACACTCAGGAGCACAA
GGCCCAGGCATTGCTGCGTGTGCTATCGCGCTTCGCGCCGCCCAACATGCAAGCTGCAGAGGCAGTGTCCCACATTCAGAGCAGCGGCCCGCGTCGCCACGGAGCCTCCAGTGCTGTCAGCTCCAACA
ACGCAGGCGCTGCTGTCCGCACCACCTCTGAAACCAGCCACGATGACAAGAACCCACCTCCTGGGAGCCCTCCCGCTGGATCAGGAGTTCCTGAGGCCGCCGCTGCCGCTGCCTCCGCGACCCACACA
GCCACCACAACTGCTGCTGCAGCTGCTGCTTCTTCATCAGCATCACCACCATCAGGGCAGGCTGTCCTTCTGCGCCAGAGGCACGGCTCCGGTACCGGCCCAGGCTACAGTGCCGATCCTCTGCTGTC
TCTGCTCTTGTTAGCACTACATAAGTTCCTGCACCCACTTCTGGGCCACTGACAGCCGTCAAACCTCAGCAGGCACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAAGA
AGTCCATGCAAAAATAAATAAATCATATTTTTGGGGAAGTAACACAGATCTAGAAGACTTAAAATAATGCATCAATTTTCCAAATAGGATGGGGTGCAGGCCGTGCGGTGTGCATGGGGCGCCAAGTT
CTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTCTGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGAGGATAGTATGTAAAAAATGTTGGGTCAAAGCCTTTCTGACAAAGTAAA
ATATTTTTAGGAGATTATTGTGTTTAGAAAATTTTTCTTTGAATTTACATTTTCTTTGGGGGATTTTTCTTTTTTTATTAAATTATTTCTTTGGAGACATTTTGATTAAAAAGAAACATCATAATTAA
AATTCACTGTCAATAATATTTATTTTTAAATAAAAATTGGAAACAAG

hide sequence

RefSeq Acc Id:

NR_184788

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	40,548,184 - 40,579,468 (+)	NCBI

RefSeq Acc Id:

NR_184789

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	40,548,184 - 40,579,468 (+)	NCBI

RefSeq Acc Id:

XM_006541032 ⟹ XP_006541095

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	40,548,767 - 40,579,396 (+)	NCBI
GRCm38	7	40,899,300 - 40,929,972 (+)	NCBI

Sequence:

show sequence

CGCCGCCGCCGCAACCCTGCGGGAGATGGAACAGCGGAACCGGCTCGGCGCCCTCGGATACCTG
CTACCTCTGCTACTGCACAGCCTGCTGCTCTTCGTGGCCGACGCTACATTCACCGAAGTCCCCAAAGATGTAACCGTGCGAGAGGGTGACGATATCGAAATGCCCTGCGCGTTCCGGGCCAGCGGAGC
CACCTCTTACTCGCTGGAGATTCAGTGGTGGTACCTCAAGGAGCCTCCCCGGGAGCTGTTACACGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGACTGTCAAGGCCTTCATGATGTTGGACC
TTCCATCCAGTGTTCGGTTCCAAGTGGAGAATTTAGAGGAAATGATGAGGTCCCCTTGGCTGTCCAGCATCCCCACTCTCCCAAGCAGACAGACCGTGCGAGTCCAGGGCAATGACATCTCACACCGG
CTTCGGCTGTCCGCCGTACGATTGCAGGACGAAGGTGTTTATGAATGTCGCGTTTCGGACTACAGCGATGATGACACTCAGGAGCACAAGGCCCAGGCATTGCTGCGTGTGCTATCGCGCTTCGCGCC
GCCCAACATGCAAGCTGCAGAGGCAGTGTCCCACATTCAGAGCAGCGGCCCGCGTCGCCACGGAGCCTCCAGTGCTGTCAGCTCCAACAACGCAGGCGCTGCTGTCCGCACCACCTCTGAAACCAGCC
ACGATGACAAGAACCCACCTCCTGGGAGCCCTCCCGCTGGATCAGGAGTTCCTGAGGCCGCCGCTGCCGCTGCCTCCGCGACCCACACAGCCACCACAACTGCTGCTGCAGCTGCTGCTTCTTCATCA
GCATCACCACCATCAGGGCAGGCTGTCCTTCTGCGCCAGAGGCACGGCTCCGGTACCGGCCCAGGCTACAGTGCCGATCCTCTGCTGTCTCTGCTCTTGTTAGCACTACATAAGTTCCTGCACCCACT
TCTGGGCCACTGACAGCCGTCAAACCTCAGCAGGCACCCTGGGAGGACACCTTGCCACATGGACACAGGGACTGAGGGAAGCATGAAGAAGTCCATGCAAAAATAAATAAATCATATTTTTGGGGAAG
TAACACAGATCTAGAAGACTTAAAATAATGCATCAATTTTCCAAATAGGATGGGGTGCAGGCCGTGCGGTGTGCATGGGGCGCCAAGTTCTTCACGGCAATGTATTTTTCTTTCCTCCACATTCCCTC
TGAATCTTCATTTTGCACGAACTCTTGAGCAAGTCCCTTGAGGATAGTATGTAAAAAATGTTGGGTCAAAGCCTTTCTGACAAAGTAAAATATTTTTAGGAGATTATTGTGTTTAGAAAATTTTTCTT
TGAATTTACATTTTCTTTGGGGGATTTTTCTTTTTTTATTAAATTATTTCTTTGGAGACATTTTGATTAAAAAGAAACATCATAATTAAAATTCACTGTCAATAATATTTATTTTTAAATAAAAATTG
GAAACAAGGATA

hide sequence


Protein RefSeqs	NP_001405560	(Get FASTA)	NCBI Sequence Viewer
	NP_001405561	(Get FASTA)	NCBI Sequence Viewer
	NP_001405563	(Get FASTA)	NCBI Sequence Viewer
	NP_001405564	(Get FASTA)	NCBI Sequence Viewer
	NP_067362	(Get FASTA)	NCBI Sequence Viewer
	XP_006541095	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA92761	(Get FASTA)	NCBI Sequence Viewer
	BAC25628	(Get FASTA)	NCBI Sequence Viewer
	EDL02975	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000044002
	ENSMUSP00000044002.10
	ENSMUSP00000146231
	ENSMUSP00000146231.2
GenBank Protein	Q9JME9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_067362 ⟸ NM_021387
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q9JME9 (UniProtKB/Swiss-Prot), Q8CEK5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MEQRNRLGALGYLLPLLLHSLLLFVADATFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGARSKVTNKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECR VSDYSDDDTQEHKAQALLRVLSRFAPPNMQAAEAVSHIQSSGPRRHGASSAVSSNNAGAAVRTTSETSHDDKNPPPGSPPAGSGVPEAAAAAASATHTATTTAAAAAASSSASPPSGQAVLLRQRHGS GTGPGYSADPLLSLLLLALHKFLHPLLGH hide sequence

RefSeq Acc Id:

XP_006541095 ⟸ XM_006541032

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEQRNRLGALGYLLPLLLHSLLLFVADATFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQ
WWYLKEPPRELLHELALSVPGARSKTVKAFMMLDLPSSVRFQVENLEEMMRSPWLSSIPTLPSRQTVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQEHKAQALLRVLSRFAPPNMQAAEA
VSHIQSSGPRRHGASSAVSSNNAGAAVRTTSETSHDDKNPPPGSPPAGSGVPEAAAAAASATHTATTTAAAAAASSSASPPSGQAVLLRQRHGSGTGPGYSADPLLSLLLLALHKFLHPLLGH

hide sequence

Ensembl Acc Id:

ENSMUSP00000140241 ⟸ ENSMUST00000186352

Ensembl Acc Id:

ENSMUSP00000145703 ⟸ ENSMUST00000206223

Ensembl Acc Id:

ENSMUSP00000146231 ⟸ ENSMUST00000205845

Protein Domains

Ig-like Ig-like V-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JME9-F1-model_v2	AlphaFold	Q9JME9	1-285	view protein structure

RGD ID:

8663719

Promoter ID:

EPDNEW_M9891

Type:

initiation region

Name:

Vstm2b_1

Description:

Mus musculus V-set and transmembrane domain containing 2B , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	7	40,899,284 - 40,899,344	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000039257	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000044705	ENTREZGENE
	ENSMUST00000044705.12	UniProtKB/Swiss-Prot
	ENSMUST00000205845	ENTREZGENE
	ENSMUST00000205845.2	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
InterPro	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_V-set	UniProtKB/Swiss-Prot
	IgSF_V-set/TM_domain	UniProtKB/Swiss-Prot
KEGG Report	mmu:58188	UniProtKB/Swiss-Prot
MGD	MGI:1914525	ENTREZGENE
NCBI Gene	Vstm2b	ENTREZGENE
PANTHER	V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
	V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 2B	UniProtKB/Swiss-Prot
Pfam	V-set	UniProtKB/Swiss-Prot
PhenoGen	Vstm2b	PhenoGen
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot
SMART	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
UniProt	A0A087WQL2_MOUSE	UniProtKB/TrEMBL
	A0A0U1RNU3_MOUSE	UniProtKB/TrEMBL
	Q8CEK5	ENTREZGENE
	Q9JME9	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q8CEK5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-08-26	Vstm2b	V-set and transmembrane domain containing 2B	2900093B09Rik	RIKEN cDNA 2900093B09 gene	Symbol and/or name updated	27372883	PROVISIONAL
2024-08-21	2900093B09Rik	RIKEN cDNA 2900093B09 gene	Vstm2b	V-set and transmembrane domain containing 2B	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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