Nr1h2 (nuclear receptor subfamily 1, group H, member 2) - Rat Genome Database

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Gene: Nr1h2 (nuclear receptor subfamily 1, group H, member 2) Mus musculus
Analyze
Symbol: Nr1h2
Name: nuclear receptor subfamily 1, group H, member 2
RGD ID: 62199
MGI Page MGI
Description: Enables chromatin DNA binding activity; nuclear receptor activity; and nuclear retinoid X receptor binding activity. Involved in several processes, including cholesterol homeostasis; positive regulation of transport; and regulation of transcription by RNA polymerase II. Acts upstream of or within cellular lipid metabolic process and regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb; and sensory organ. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to human NR1H2 (nuclear receptor subfamily 1 group H member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI194859; liver X receptor beta; LX; LXR; LXR beta; LXRB; LXRbeta; LXRBSV; NER1; nuclear receptor subfamily 1 group H member 2; OR-1; oxysterols receptor LXR-beta; retinoid X receptor-interacting protein No.15; RI; RIP15; ubiquitously-expressed nuclear receptor 2; Un; Unr; Unr2; UR
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Nr1h2-ps  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,199,040 - 44,204,928 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,199,040 - 44,203,375 (-)EnsemblGRCm39 Ensembl
GRCm38744,549,616 - 44,553,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,549,616 - 44,553,951 (-)EnsemblGRCm38mm10GRCm38
MGSCv37751,805,002 - 51,809,293 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,417,674 - 44,421,965 (-)NCBIMGSCv36mm8
Celera739,999,761 - 40,004,052 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pinoresinol  (ISO)
(1->4)-beta-D-glucan  (EXP)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
22-Hydroxycholesterol  (ISO)
8-(4-chlorophenylthio)-cAMP  (EXP)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
alpha-linolenic acid  (EXP)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (EXP,ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bezafibrate  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bosentan  (ISO)
bucladesine  (EXP)
chenodeoxycholic acid  (ISO)
chlorpyrifos  (EXP)
cholesterol  (EXP,ISO)
choline  (EXP)
clofibrate  (EXP)
cyclosporin A  (ISO)
D-glucose  (EXP)
deoxycholic acid  (ISO)
dexamethasone  (EXP)
diarsenic trioxide  (EXP,ISO)
diethylstilbestrol  (ISO)
etoposide  (ISO)
ezetimibe  (ISO)
fenofibrate  (EXP,ISO)
fenthion  (EXP)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
fumonisin B1  (EXP)
gemfibrozil  (ISO)
glucose  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
guggulsterone  (EXP)
GW 3965  (EXP,ISO)
GW 501516  (ISO)
hexadecanoic acid  (EXP)
ketoconazole  (ISO)
L-methionine  (EXP)
lansoprazole  (ISO)
lipopolysaccharide  (EXP,ISO)
loliolide  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Morroniside  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (ISO)
nicotine  (ISO)
octanoic acid  (EXP)
Octicizer  (ISO)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
pioglitazone  (ISO)
piperonyl butoxide  (EXP)
pitavastatin  (EXP)
pitavastatin(1-)  (EXP)
rac-lactic acid  (ISO)
sodium arsenite  (EXP)
streptozocin  (ISO)
temozolomide  (ISO)
teniposide  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
uranium atom  (ISO)
valproic acid  (ISO)
vecuronium bromide  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell differentiation  (IBA)
cellular lipid metabolic process  (IDA)
cholesterol homeostasis  (IDA,IMP)
lipid homeostasis  (IMP)
lipid metabolic process  (IEA)
negative regulation of cholesterol storage  (ISO)
negative regulation of cold-induced thermogenesis  (IGI)
negative regulation of DNA-templated transcription  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of lipid transport  (ISO)
negative regulation of pinocytosis  (ISO)
negative regulation of proteolysis  (IMP)
negative regulation of response to endoplasmic reticulum stress  (IDA)
negative regulation of transcription by RNA polymerase II  (IBA,IMP)
phosphatidylcholine acyl-chain remodeling  (IMP)
positive regulation of cholesterol efflux  (IDA,IGI,ISO)
positive regulation of cholesterol transport  (ISO)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of fatty acid biosynthetic process  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of high-density lipoprotein particle assembly  (IDA)
positive regulation of lipid storage  (IMP)
positive regulation of miRNA transcription  (IDA)
positive regulation of pancreatic juice secretion  (IMP)
positive regulation of protein metabolic process  (ISO)
positive regulation of secretion of lysosomal enzymes  (IMP)
positive regulation of transcription by RNA polymerase II  (IBA,IDA,ISO)
positive regulation of triglyceride biosynthetic process  (ISO)
regulation of DNA-templated transcription  (IDA)
regulation of transcription by RNA polymerase II  (IGI)
response to nutrient levels  (ISO)
retinoic acid receptor signaling pathway  (ISO)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal alveolar lamellar body morphology  (IAGP)
abnormal astrocyte morphology  (IAGP)
abnormal bone marrow cell physiology  (IAGP)
abnormal brain ependyma morphology  (IAGP)
abnormal brain vasculature morphology  (IAGP)
abnormal brain ventricle morphology  (IAGP)
abnormal cellular cholesterol metabolism  (IAGP)
abnormal cerebral aqueduct morphology  (IAGP)
abnormal cholesterol homeostasis  (IAGP)
abnormal choroid plexus morphology  (IAGP)
abnormal female reproductive system morphology  (IAGP)
abnormal female reproductive system physiology  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal glycogen homeostasis  (IAGP)
abnormal lateral ventricle morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal lipid level  (IAGP)
abnormal lung morphology  (IAGP)
abnormal macrophage morphology  (IAGP)
abnormal male reproductive system morphology  (IAGP)
abnormal male reproductive system physiology  (IAGP)
abnormal myelin sheath morphology  (IAGP)
abnormal myelination  (IAGP)
abnormal myometrium morphology  (IAGP)
abnormal neurohypophysis median eminence morphology  (IAGP)
abnormal oligodendrocyte morphology  (IAGP)
abnormal optic nerve morphology  (IAGP)
abnormal parturition  (IAGP)
abnormal pulmonary alveolar parenchyma morphology  (IAGP)
abnormal pulmonary alveolar system morphology  (IAGP)
abnormal retina ganglion cell morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retina nerve fiber layer morphology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal Sertoli cell morphology  (IAGP)
abnormal skeleton physiology  (IAGP)
abnormal spermatogonia proliferation  (IAGP)
abnormal spinal cord central canal morphology  (IAGP)
abnormal substantia nigra pars reticulata morphology  (IAGP)
abnormal third ventricle morphology  (IAGP)
abnormal uterus physiology  (IAGP)
absent choroid plexus  (IAGP)
amyloid beta deposits  (IAGP)
astrocytosis  (IAGP)
decreased circulating luteinizing hormone level  (IAGP)
decreased circulating testosterone level  (IAGP)
decreased neuron number  (IAGP)
decreased oligodendrocyte number  (IAGP)
decreased retina ganglion cell number  (IAGP)
decreased testis weight  (IAGP)
hindlimb paralysis  (IAGP)
impaired smooth muscle contractility  (IAGP)
increased liver cholesterol level  (IAGP)
increased lung squamous cell carcinoma incidence  (IAGP)
increased macrophage derived foam cell number  (IAGP)
increased male germ cell apoptosis  (IAGP)
increased microglial cell activation  (IAGP)
increased muscle cell glucose uptake  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
increased susceptibility to induced morbidity/mortality  (IAGP)
intracranial hemorrhage  (IAGP)
Leydig cell hypertrophy  (IAGP)
lung inflammation  (IAGP)
neuron degeneration  (IAGP)
no abnormal phenotype detected  (IAGP)
optic nerve degeneration  (IAGP)
pregnancy-related premature death  (IAGP)
premature death  (IAGP)
reduced male fertility  (IAGP)
respiratory distress  (IAGP)
seminiferous tubule degeneration  (IAGP)
small fourth ventricle  (IAGP)
small lateral ventricles  (IAGP)
small third ventricle  (IAGP)
testicular atrophy  (IAGP)
thin epidermis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Simultaneous activation of the liver X receptors (LXRalpha and LXRbeta) drives murine collagen-induced arthritis disease pathology. Asquith DL, etal., Ann Rheum Dis. 2011 Dec;70(12):2225-8. Epub 2011 Aug 22.
2. Neuropathologic and biochemical changes during disease progression in liver X receptor beta-/- mice, a model of adult neuron disease. Bigini P, etal., J Neuropathol Exp Neurol. 2010 Jun;69(6):593-605.
3. Liver X receptor (LXR) mediates negative regulation of mouse and human Th17 differentiation. Cui G, etal., J Clin Invest. 2011 Feb;121(2):658-70. doi: 10.1172/JCI42974. Epub 2011 Jan 25.
4. Liver X receptor gene polymorphisms and adipose tissue expression levels in obesity. Dahlman I, etal., Pharmacogenet Genomics. 2006 Dec;16(12):881-9.
5. Estrogen-dependent gallbladder carcinogenesis in LXRbeta-/- female mice. Gabbi C, etal., Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14763-8. Epub 2010 Aug 2.
6. Effect of a high-fat diet on the hepatic expression of nuclear receptors and their target genes: relevance to drug disposition. Ghoneim RH, etal., Br J Nutr. 2015 Feb 14;113(3):507-16. doi: 10.1017/S0007114514003717. Epub 2015 Jan 23.
7. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
8. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
9. MGDs mouse GO annotations MGD data from the GO Consortium
10. MGD IEA MGD IEA
11. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
12. Mouse MP Annotation Import Pipeline RGD automated import pipeline
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Suggestive evidence of associations between liver X receptor ß polymorphisms with type 2 diabetes mellitus and obesity in three cohort studies: HUNT2 (Norway), MONICA (France) and HELENA (Europe). Solaas K, etal., BMC Med Genet. 2010 Oct 12;11:144. doi: 10.1186/1471-2350-11-144.
15. Liver X receptors as insulin-mediating factors in fatty acid and cholesterol biosynthesis. Tobin KA, etal., J Biol Chem 2002 Mar 22;277(12):10691-7.
16. (-)-Epigallocatechin-3-Gallate Ameliorates Atherosclerosis and Modulates Hepatic Lipid Metabolic Gene Expression in Apolipoprotein E Knockout Mice: Involvement of TTC39B. Wang W, etal., Front Pharmacol. 2018 Mar 9;9:195. doi: 10.3389/fphar.2018.00195. eCollection 2018.
17. Liver X receptor protects against liver injury in sepsis caused by rodent cecal ligation and puncture. Wang YY, etal., Surg Infect (Larchmt). 2011 Aug;12(4):283-9. Epub 2011 Aug 4.
18. Dingxin Recipe IV attenuates atherosclerosis by regulating lipid metabolism through LXR-α/SREBP1 pathway and modulating the gut microbiota in ApoE-/- mice fed with HFD. Zhang Y, etal., J Ethnopharmacol. 2021 Feb 10;266:113436. doi: 10.1016/j.jep.2020.113436. Epub 2020 Oct 1.
Additional References at PubMed
PMID:7760852   PMID:9244354   PMID:10349636   PMID:10675617   PMID:10922068   PMID:10968783   PMID:11042159   PMID:11076861   PMID:11090130   PMID:11149950   PMID:11217851   PMID:11238557  
PMID:11792716   PMID:11851872   PMID:12193651   PMID:12196343   PMID:12368482   PMID:12477932   PMID:12520002   PMID:12524534   PMID:12610110   PMID:12730332   PMID:12819202   PMID:12897148  
PMID:12970362   PMID:14521951   PMID:14610273   PMID:14699103   PMID:14703507   PMID:14739254   PMID:14993927   PMID:15052659   PMID:15146238   PMID:15292368   PMID:15479645   PMID:15489334  
PMID:15525595   PMID:15561926   PMID:15591022   PMID:15601766   PMID:15674823   PMID:15738425   PMID:15752369   PMID:15761042   PMID:15782199   PMID:15831500   PMID:15930522   PMID:16007255  
PMID:16054068   PMID:16141072   PMID:16141073   PMID:16141411   PMID:16325781   PMID:16505352   PMID:16511593   PMID:16524875   PMID:16644917   PMID:16823488   PMID:16825483   PMID:16869726  
PMID:16876124   PMID:16895745   PMID:16971476   PMID:16973760   PMID:17107947   PMID:17166844   PMID:17218271   PMID:17256725   PMID:17341595   PMID:17369526   PMID:17439953   PMID:17496333  
PMID:17563384   PMID:17657314   PMID:17726195   PMID:17873880   PMID:17936707   PMID:17967808   PMID:18055760   PMID:18077828   PMID:18096827   PMID:18160655   PMID:18195045   PMID:18238900  
PMID:18242221   PMID:18276933   PMID:18287559   PMID:18292813   PMID:18450964   PMID:18566121   PMID:18614014   PMID:18639878   PMID:18768805   PMID:18769020   PMID:18772483   PMID:18806227  
PMID:18820007   PMID:18840761   PMID:18949453   PMID:18981139   PMID:18981140   PMID:18983830   PMID:19032342   PMID:19122149   PMID:19136075   PMID:19196952   PMID:19218241   PMID:19238156  
PMID:19325005   PMID:19327357   PMID:19342446   PMID:19380774   PMID:19395734   PMID:19406833   PMID:19436111   PMID:19487338   PMID:19520913   PMID:19556420   PMID:19608643   PMID:19646905  
PMID:19690071   PMID:19714646   PMID:19717840   PMID:19721697   PMID:19741146   PMID:19787047   PMID:19796621   PMID:19878653   PMID:19996385   PMID:20044803   PMID:20059953   PMID:20079709  
PMID:20080977   PMID:20110577   PMID:20133709   PMID:20159957   PMID:20175894   PMID:20211142   PMID:20375256   PMID:20388921   PMID:20412781   PMID:20566868   PMID:20739291   PMID:20932939  
PMID:21103366   PMID:21123945   PMID:21134374   PMID:21173252   PMID:21187453   PMID:21267068   PMID:21349840   PMID:21398609   PMID:21521718   PMID:21525287   PMID:21593381   PMID:21609322  
PMID:21715627   PMID:21784849   PMID:21873635   PMID:22073227   PMID:22156197   PMID:22158963   PMID:22323586   PMID:22454476   PMID:22481067   PMID:22529354   PMID:22547570   PMID:22580900  
PMID:22610535   PMID:22673513   PMID:22723445   PMID:22728933   PMID:22826221   PMID:22891211   PMID:22931956   PMID:22969086   PMID:22984598   PMID:22988430   PMID:23021221   PMID:23029557  
PMID:23063693   PMID:23073827   PMID:23077096   PMID:23085633   PMID:23099324   PMID:23110859   PMID:23185273   PMID:23292650   PMID:23348573   PMID:23519695   PMID:23554947   PMID:23675307  
PMID:23686490   PMID:23706740   PMID:23770640   PMID:23788762   PMID:23823481   PMID:23867501   PMID:23931754   PMID:24074869   PMID:24201575   PMID:24206663   PMID:24333430   PMID:24368671  
PMID:24394905   PMID:24438183   PMID:24618263   PMID:24671012   PMID:24695360   PMID:24803164   PMID:24934178   PMID:24947527   PMID:24952961   PMID:24994901   PMID:25271621   PMID:25277999  
PMID:25708389   PMID:25724563   PMID:25755249   PMID:25825525   PMID:25946408   PMID:26023184   PMID:26075824   PMID:26076474   PMID:26324101   PMID:26402841   PMID:26440226   PMID:26504234  
PMID:26602218   PMID:26792941   PMID:26814197   PMID:26846362   PMID:27053774   PMID:27180240   PMID:27251289   PMID:27335465   PMID:27382175   PMID:27394190   PMID:27520356   PMID:28034754  
PMID:28041958   PMID:28052875   PMID:28082258   PMID:28147278   PMID:28231341   PMID:28270440   PMID:28324010   PMID:28386023   PMID:28420650   PMID:28432199   PMID:28732092   PMID:28778663  
PMID:28971895   PMID:29033131   PMID:29336888   PMID:29410501   PMID:29431742   PMID:29447944   PMID:29507185   PMID:29507213   PMID:29688375   PMID:29739800   PMID:29915246   PMID:30018108  
PMID:30127022   PMID:30304667   PMID:30455459   PMID:30590048   PMID:30602495   PMID:31301160   PMID:31371497   PMID:31501273   PMID:31658997   PMID:31783409   PMID:31882567   PMID:31980500  
PMID:32072744   PMID:32097464   PMID:32286429   PMID:32297184   PMID:32325033   PMID:32716519   PMID:32963358   PMID:33284790   PMID:33361391   PMID:33373442   PMID:33862368   PMID:33963286  
PMID:34122329   PMID:34259574   PMID:34278533   PMID:34297734   PMID:34481107   PMID:34799646   PMID:35623301   PMID:36592658   PMID:36658240  


Genomics

Comparative Map Data
Nr1h2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,199,040 - 44,204,928 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,199,040 - 44,203,375 (-)EnsemblGRCm39 Ensembl
GRCm38744,549,616 - 44,553,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,549,616 - 44,553,951 (-)EnsemblGRCm38mm10GRCm38
MGSCv37751,805,002 - 51,809,293 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,417,674 - 44,421,965 (-)NCBIMGSCv36mm8
Celera739,999,761 - 40,004,052 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.83NCBI
NR1H2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,376,457 - 50,383,388 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,329,653 - 50,383,388 (+)EnsemblGRCh38hg38GRCh38
GRCh371950,879,714 - 50,886,645 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,571,497 - 55,578,079 (+)NCBINCBI36Build 36hg18NCBI36
Build 341955,571,514 - 55,578,048NCBI
Celera1947,929,924 - 47,936,510 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,217,814 - 47,224,423 (+)NCBIHuRef
CHM1_11950,881,453 - 50,888,062 (+)NCBICHM1_1
T2T-CHM13v2.01953,464,005 - 53,470,940 (+)NCBIT2T-CHM13v2.0
Nr1h2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,178,483 - 104,183,863 (-)NCBIGRCr8
mRatBN7.2195,041,967 - 95,047,358 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,041,967 - 95,047,377 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,427,372 - 100,432,752 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,900,016 - 108,905,396 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,190,437 - 102,195,817 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,554,577 - 100,559,896 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,554,544 - 100,559,942 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,619,964 - 101,625,283 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,027,197 - 95,032,516 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,105,321 - 95,110,627 (-)NCBI
Celera189,304,444 - 89,309,763 (-)NCBICelera
Cytogenetic Map1q22NCBI
Nr1h2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955559730,670 - 737,505 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955559731,630 - 736,973 (-)NCBIChiLan1.0ChiLan1.0
NR1H2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,442,021 - 56,448,701 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,363,472 - 58,370,113 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,340,077 - 47,346,737 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,243,124 - 56,250,024 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,243,124 - 56,250,024 (+)Ensemblpanpan1.1panPan2
NR1H2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,332,691 - 106,339,168 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,332,798 - 106,339,135 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,905,786 - 105,912,261 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,843,783 - 106,850,258 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,843,781 - 106,850,221 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,515,887 - 106,522,355 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,157,420 - 106,163,895 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,998,070 - 107,004,546 (-)NCBIUU_Cfam_GSD_1.0
Nr1h2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,347,505 - 22,353,794 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936889223,101 - 229,990 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936889223,137 - 229,968 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR1H2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,239,500 - 55,245,456 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,238,536 - 55,245,457 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,087,383 - 51,094,318 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NR1H2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,438,428 - 43,445,190 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,437,950 - 43,446,063 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607323,425,677 - 23,432,503 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr1h2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,132,904 - 4,140,896 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,136,052 - 4,141,648 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nr1h2
220 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2769
Count of miRNA genes:634
Interacting mature miRNAs:782
Transcripts:ENSMUST00000073488, ENSMUST00000107910, ENSMUST00000107911, ENSMUST00000107912, ENSMUST00000123358, ENSMUST00000128354, ENSMUST00000128600, ENSMUST00000132769, ENSMUST00000136611, ENSMUST00000137674, ENSMUST00000141901, ENSMUST00000142298, ENSMUST00000167197
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse

Markers in Region
AI194859  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,549,743 - 44,549,824UniSTSGRCm38
MGSCv37751,805,113 - 51,805,194UniSTSGRCm37
Celera739,999,872 - 39,999,953UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS
Whitehead/MRC_RH7559.17UniSTS
AJ132602  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,549,655 - 44,549,762UniSTSGRCm38
MGSCv37751,805,025 - 51,805,132UniSTSGRCm37
Celera739,999,784 - 39,999,891UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS
Whitehead/MRC_RH7561.36UniSTS
RH140629  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,550,393 - 44,550,816UniSTSGRCm38
MGSCv37751,805,763 - 51,806,186UniSTSGRCm37
Celera740,000,522 - 40,000,945UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS
AA891955  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,549,707 - 44,549,860UniSTSGRCm38
MGSCv37751,805,077 - 51,805,230UniSTSGRCm37
Celera739,999,836 - 39,999,989UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001285517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017322126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC149607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ132602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC106148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ573162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY197597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU869275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU461595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U09419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000073488   ⟹   ENSMUSP00000073188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,199,040 - 44,203,373 (-)Ensembl
GRCm38.p6 Ensembl744,549,616 - 44,553,949 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107910   ⟹   ENSMUSP00000103543
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,199,059 - 44,203,347 (-)Ensembl
GRCm38.p6 Ensembl744,549,635 - 44,553,923 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107911   ⟹   ENSMUSP00000103544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,199,041 - 44,203,372 (-)Ensembl
GRCm38.p6 Ensembl744,549,617 - 44,553,948 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107912   ⟹   ENSMUSP00000103545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,199,040 - 44,203,110 (-)Ensembl
GRCm38.p6 Ensembl744,549,616 - 44,553,686 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,199,409 - 44,203,335 (-)Ensembl
GRCm38.p6 Ensembl744,549,985 - 44,553,911 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,199,798 - 44,201,047 (-)Ensembl
GRCm38.p6 Ensembl744,550,374 - 44,551,623 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128600   ⟹   ENSMUSP00000146517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,201,653 - 44,203,347 (-)Ensembl
GRCm38.p6 Ensembl744,552,229 - 44,553,923 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,200,481 - 44,203,375 (-)Ensembl
GRCm38.p6 Ensembl744,551,057 - 44,553,951 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,202,058 - 44,203,323 (-)Ensembl
GRCm38.p6 Ensembl744,552,634 - 44,553,899 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137674
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,200,564 - 44,201,389 (-)Ensembl
GRCm38.p6 Ensembl744,551,140 - 44,551,965 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,201,633 - 44,202,011 (-)Ensembl
GRCm38.p6 Ensembl744,552,209 - 44,552,587 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142298   ⟹   ENSMUSP00000147076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,202,017 - 44,202,636 (-)Ensembl
GRCm38.p6 Ensembl744,552,593 - 44,553,212 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167197   ⟹   ENSMUSP00000126788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,199,076 - 44,203,347 (-)Ensembl
GRCm38.p6 Ensembl744,549,652 - 44,553,923 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207550
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,201,379 - 44,203,116 (-)Ensembl
GRCm38.p6 Ensembl744,551,955 - 44,553,692 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207737   ⟹   ENSMUSP00000146601
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,201,610 - 44,203,325 (-)Ensembl
GRCm38.p6 Ensembl744,552,186 - 44,553,901 (-)Ensembl
RefSeq Acc Id: ENSMUST00000208322   ⟹   ENSMUSP00000146466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,199,056 - 44,201,669 (-)Ensembl
GRCm38.p6 Ensembl744,549,632 - 44,552,245 (-)Ensembl
RefSeq Acc Id: ENSMUST00000208366   ⟹   ENSMUSP00000146455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,201,246 - 44,203,319 (-)Ensembl
GRCm38.p6 Ensembl744,551,822 - 44,553,895 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209017   ⟹   ENSMUSP00000146826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,201,183 - 44,203,132 (-)Ensembl
GRCm38.p6 Ensembl744,551,759 - 44,553,708 (-)Ensembl
RefSeq Acc Id: NM_001285517   ⟹   NP_001272446
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,199,040 - 44,203,370 (-)NCBI
GRCm38744,549,616 - 44,553,965 (-)NCBI
Celera739,999,745 - 40,004,094 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285518   ⟹   NP_001272447
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,199,040 - 44,203,370 (-)NCBI
GRCm38744,549,616 - 44,553,965 (-)NCBI
Celera739,999,745 - 40,004,094 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285519   ⟹   NP_001272448
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,199,040 - 44,203,370 (-)NCBI
GRCm38744,549,616 - 44,553,965 (-)NCBI
Celera739,999,745 - 40,004,094 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001416185   ⟹   NP_001403114
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,199,040 - 44,203,370 (-)NCBI
RefSeq Acc Id: NM_009473   ⟹   NP_033499
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,199,040 - 44,203,370 (-)NCBI
GRCm38744,549,616 - 44,553,965 (-)NCBI
MGSCv37751,805,002 - 51,809,293 (-)RGD
Celera739,999,745 - 40,004,094 (-)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017322126   ⟹   XP_017177615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,199,040 - 44,204,928 (-)NCBI
GRCm38744,549,616 - 44,553,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242378   ⟹   XP_030098238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,199,040 - 44,204,928 (-)NCBI
GRCm38744,549,616 - 44,553,968 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033499   ⟸   NM_009473
- Peptide Label: isoform a
- UniProtKB: Q60644 (UniProtKB/Swiss-Prot),   A0A140LHL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272448   ⟸   NM_001285519
- Peptide Label: isoform b
- UniProtKB: Q8BP65 (UniProtKB/TrEMBL),   A0A140LHL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272446   ⟸   NM_001285517
- Peptide Label: isoform a
- UniProtKB: Q60644 (UniProtKB/Swiss-Prot),   A0A140LHL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272447   ⟸   NM_001285518
- Peptide Label: isoform b
- UniProtKB: Q8BP65 (UniProtKB/TrEMBL),   A0A140LHL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017177615   ⟸   XM_017322126
- Peptide Label: isoform X2
- UniProtKB: A0A140LHL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030098238   ⟸   XM_030242378
- Peptide Label: isoform X2
- UniProtKB: A0A140LHL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000103543   ⟸   ENSMUST00000107910
RefSeq Acc Id: ENSMUSP00000103545   ⟸   ENSMUST00000107912
RefSeq Acc Id: ENSMUSP00000103544   ⟸   ENSMUST00000107911
RefSeq Acc Id: ENSMUSP00000073188   ⟸   ENSMUST00000073488
RefSeq Acc Id: ENSMUSP00000146455   ⟸   ENSMUST00000208366
RefSeq Acc Id: ENSMUSP00000146466   ⟸   ENSMUST00000208322
RefSeq Acc Id: ENSMUSP00000146601   ⟸   ENSMUST00000207737
RefSeq Acc Id: ENSMUSP00000126788   ⟸   ENSMUST00000167197
RefSeq Acc Id: ENSMUSP00000146517   ⟸   ENSMUST00000128600
RefSeq Acc Id: ENSMUSP00000147076   ⟸   ENSMUST00000142298
RefSeq Acc Id: ENSMUSP00000146826   ⟸   ENSMUST00000209017
RefSeq Acc Id: NP_001403114   ⟸   NM_001416185
- Peptide Label: isoform a
- UniProtKB: Q60644 (UniProtKB/Swiss-Prot)
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60644-F1-model_v2 AlphaFold Q60644 1-446 view protein structure

Promoters
RGD ID:8663877
Promoter ID:EPDNEW_M9970
Type:initiation region
Name:Nr1h2_1
Description:Mus musculus nuclear receptor subfamily 1, group H, member 2, transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38744,553,914 - 44,553,974EPDNEW
RGD ID:6848180
Promoter ID:MM_ACW:44435
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Kidney,   Lung
Transcripts:NR1H2.MSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36751,805,351 - 51,805,851 (-)MPROMDB
RGD ID:6841653
Promoter ID:MM_KWN:50275
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Kidney,   Liver
Transcripts:OTTMUST00000055722,   OTTMUST00000055723
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36751,806,816 - 51,807,532 (-)MPROMDB
RGD ID:6841655
Promoter ID:MM_KWN:50276
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107911,   ENSMUST00000107912,   NM_009473,   OTTMUST00000055655,   OTTMUST00000055716,   OTTMUST00000055717,   OTTMUST00000055718,   OTTMUST00000055719,   OTTMUST00000055720,   OTTMUST00000055721,   UC009GQC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36751,808,116 - 51,809,562 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1352463 AgrOrtholog
Ensembl Genes ENSMUSG00000060601 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073488 ENTREZGENE
  ENSMUST00000073488.12 UniProtKB/Swiss-Prot
  ENSMUST00000107910 ENTREZGENE
  ENSMUST00000107910.8 UniProtKB/TrEMBL
  ENSMUST00000107911 ENTREZGENE
  ENSMUST00000107911.8 UniProtKB/TrEMBL
  ENSMUST00000107912 ENTREZGENE
  ENSMUST00000107912.8 UniProtKB/Swiss-Prot
  ENSMUST00000128600.3 UniProtKB/TrEMBL
  ENSMUST00000142298.2 UniProtKB/TrEMBL
  ENSMUST00000167197 ENTREZGENE
  ENSMUST00000167197.8 UniProtKB/Swiss-Prot
  ENSMUST00000207737.2 UniProtKB/TrEMBL
  ENSMUST00000208322.2 UniProtKB/TrEMBL
  ENSMUST00000208366.2 UniProtKB/TrEMBL
  ENSMUST00000209017.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Liver_X_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22260 UniProtKB/Swiss-Prot
MGD MGI:1352463 ENTREZGENE
NCBI Gene 22260 ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OXYSTEROLS RECEPTOR LXR-BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nr1h2 PhenoGen
PRINTS LIVERXRECPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140LHK8_MOUSE UniProtKB/TrEMBL
  A0A140LHL9 ENTREZGENE, UniProtKB/TrEMBL
  A0A140LHR6_MOUSE UniProtKB/TrEMBL
  A0A140LHY6_MOUSE UniProtKB/TrEMBL
  A0A140LIH8_MOUSE UniProtKB/TrEMBL
  A0A140LJ50_MOUSE UniProtKB/TrEMBL
  NR1H2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BP65 ENTREZGENE, UniProtKB/TrEMBL