2200002D01Rik (RIKEN cDNA 2200002D01 gene) - Rat Genome Database

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Gene: 2200002D01Rik (RIKEN cDNA 2200002D01 gene) Mus musculus
Analyze
Symbol: 2200002D01Rik
Name: RIKEN cDNA 2200002D01 gene
RGD ID: 1610316
MGI Page MGI
Description: Located in nucleolus. Orthologous to human C19orf33 (chromosome 19 open reading frame 33).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010005J02Rik; H2; H2RSP; HAI-2 related small protein; IMUP; IMUP-1; IMUP-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,946,946 - 28,947,892 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,945,986 - 28,947,891 (-)EnsemblGRCm39 Ensembl
GRCm38729,247,521 - 29,248,467 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl729,246,561 - 29,248,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv37730,032,540 - 30,033,486 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera723,818,781 - 23,819,727 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
nucleolus  (IDA)
nucleoplasm  (ISO)
nucleus  (ISO)
plasma membrane  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12604353   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21677750  


Genomics

Comparative Map Data
2200002D01Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,946,946 - 28,947,892 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,945,986 - 28,947,891 (-)EnsemblGRCm39 Ensembl
GRCm38729,247,521 - 29,248,467 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl729,246,561 - 29,248,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv37730,032,540 - 30,033,486 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera723,818,781 - 23,819,727 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.94NCBI
C19orf33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381938,304,251 - 38,305,006 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1938,304,164 - 38,305,006 (+)EnsemblGRCh38hg38GRCh38
GRCh371938,794,891 - 38,795,646 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361943,486,644 - 43,487,486 (+)NCBINCBI36Build 36hg18NCBI36
Celera1935,597,040 - 35,597,882 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1935,242,705 - 35,243,547 (+)NCBIHuRef
CHM1_11938,795,157 - 38,795,999 (+)NCBICHM1_1
T2T-CHM13v2.01941,106,417 - 41,107,172 (+)NCBIT2T-CHM13v2.0
C1h19orf33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8193,677,305 - 93,678,141 (-)NCBIGRCr8
mRatBN7.2184,549,830 - 84,550,666 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,549,831 - 84,550,664 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx189,961,285 - 89,962,241 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0198,420,974 - 98,421,930 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,717,133 - 91,718,089 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0188,192,493 - 88,194,085 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl187,190,381 - 87,191,588 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,192,370 - 88,193,346 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0188,371,325 - 88,372,276 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,383,795 - 84,384,760 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera178,937,007 - 78,937,958 (-)NCBICelera
Cytogenetic Map1q21NCBI
LOC102016906
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554681,133,370 - 1,134,242 (-)NCBIChiLan1.0ChiLan1.0
C20H19orf33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22044,587,937 - 44,593,644 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11946,458,300 - 46,464,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01935,395,222 - 35,396,580 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11943,969,175 - 43,970,598 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1943,969,247 - 43,970,601 (+)Ensemblpanpan1.1panPan2
C1H19orf33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,689,909 - 114,693,980 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1114,092,701 - 114,097,198 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01115,291,150 - 115,295,649 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11114,863,961 - 114,868,459 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01114,481,913 - 114,484,330 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01115,520,238 - 115,521,101 (-)NCBIUU_Cfam_GSD_1.0
CUNH19orf33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934912,913,338 - 12,914,961 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368011,079,594 - 1,080,296 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368011,077,823 - 1,080,317 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H19orf33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1647,223,077 - 47,224,230 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2642,723,134 - 42,724,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH19orf33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1632,947,469 - 32,948,721 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl632,947,820 - 32,949,288 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607310,892,513 - 10,894,006 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH19orf33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479411,773,557 - 11,774,502 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 2200002D01Rik
28 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:725
Count of miRNA genes:438
Interacting mature miRNAs:506
Transcripts:ENSMUST00000032808, ENSMUST00000151339
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse

Markers in Region
AA964285  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38729,247,375 - 29,247,528UniSTSGRCm38
MGSCv37730,032,394 - 30,032,547UniSTSGRCm37
Celera723,818,635 - 23,818,788UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map7B1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032808   ⟹   ENSMUSP00000032808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl728,945,986 - 28,947,891 (-)Ensembl
GRCm38.p6 Ensembl729,246,561 - 29,248,466 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl728,946,997 - 28,947,763 (-)Ensembl
GRCm38.p6 Ensembl729,247,572 - 29,248,338 (-)Ensembl
RefSeq Acc Id: NM_028179   ⟹   NP_082455
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39728,946,946 - 28,947,892 (-)NCBI
GRCm38729,247,521 - 29,248,467 (-)ENTREZGENE
MGSCv37730,032,540 - 30,033,486 (-)RGD
Celera723,818,781 - 23,819,727 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_082455 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAM54028 (Get FASTA)   NCBI Sequence Viewer  
  BAB25780 (Get FASTA)   NCBI Sequence Viewer  
  BAC28457 (Get FASTA)   NCBI Sequence Viewer  
  EDL24073 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000032808
  ENSMUSP00000032808.5
Reference Protein Sequences
RefSeq Acc Id: NP_082455   ⟸   NM_028179
- UniProtKB: Q9D809 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000032808   ⟸   ENSMUST00000032808

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D809-F1-model_v2 AlphaFold Q9D809 1-114 view protein structure

Promoters
RGD ID:6892528
Promoter ID:EPDNEW_M9715
Type:initiation region
Name:2200002D01Rik_1
Description:Mus musculus RIKEN cDNA 2200002D01 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38729,248,393 - 29,248,453EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919525 AgrOrtholog
Ensembl Genes ENSMUSG00000030587 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032808 ENTREZGENE
  ENSMUST00000032808.6 UniProtKB/TrEMBL
InterPro IMUP UniProtKB/TrEMBL
KEGG Report mmu:72275 UniProtKB/TrEMBL
MGD MGI:1919525 ENTREZGENE
NCBI Gene 72275 ENTREZGENE
Pfam IMUP UniProtKB/TrEMBL
PhenoGen 2200002D01Rik PhenoGen
UniProt Q9D809 ENTREZGENE, UniProtKB/TrEMBL