Fxyd3 (FXYD domain-containing ion transport regulator 3) - Rat Genome Database

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Gene: Fxyd3 (FXYD domain-containing ion transport regulator 3) Mus musculus
Analyze
Symbol: Fxyd3
Name: FXYD domain-containing ion transport regulator 3
RGD ID: 1553033
MGI Page MGI
Description: Enables ATPase binding activity. Predicted to be involved in regulation of monoatomic ion transport. Predicted to act upstream of or within potassium ion transport and sodium ion transport. Located in endoplasmic reticulum membrane. Is expressed in several structures, including alimentary system; genitourinary system; nasal cavity epithelium; submandibular gland primordium; and vibrissa. Orthologous to human FXYD3 (FXYD domain containing ion transport regulator 3).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: chloride conductance inducer protein Mat-8; mammary tumor 8 kDa protein; Mat; Mat8; phospholemman-like; sodium/potassium-transporting ATPase subunit FXYD3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,769,960 - 30,776,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,767,597 - 30,776,129 (-)EnsemblGRCm39 Ensembl
GRCm38731,070,535 - 31,076,697 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl731,068,172 - 31,076,704 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,855,554 - 31,861,716 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,779,297 - 30,785,432 (-)NCBIMGSCv36mm8
Celera725,637,243 - 25,643,391 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7836447   PMID:7970700   PMID:10349636   PMID:10922068   PMID:10950925   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:14694902   PMID:15489334  
PMID:15743908   PMID:16141072   PMID:16141073   PMID:16403837   PMID:16602821   PMID:17077088   PMID:18554416   PMID:21267068   PMID:21282332   PMID:21677750   PMID:21873635   PMID:21947380  
PMID:25058609   PMID:30206184   PMID:30973865   PMID:34292881  


Genomics

Comparative Map Data
Fxyd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,769,960 - 30,776,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,767,597 - 30,776,129 (-)EnsemblGRCm39 Ensembl
GRCm38731,070,535 - 31,076,697 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl731,068,172 - 31,076,704 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,855,554 - 31,861,716 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,779,297 - 30,785,432 (-)NCBIMGSCv36mm8
Celera725,637,243 - 25,643,391 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.29NCBI
FXYD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,115,823 - 35,124,324 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,115,823 - 35,124,324 (+)EnsemblGRCh38hg38GRCh38
GRCh371935,606,727 - 35,615,228 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,298,639 - 40,307,067 (+)NCBINCBI36Build 36hg18NCBI36
Build 341940,298,638 - 40,307,067NCBI
Celera1932,320,104 - 32,328,664 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,114,660 - 32,123,221 (+)NCBIHuRef
CHM1_11935,608,738 - 35,617,241 (+)NCBICHM1_1
T2T-CHM13v2.01937,660,439 - 37,669,003 (+)NCBIT2T-CHM13v2.0
Fxyd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,432,918 - 95,440,129 (-)NCBIGRCr8
mRatBN7.2186,305,531 - 86,312,455 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx191,725,977 - 91,732,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,192,123 - 100,198,914 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,484,253 - 93,491,042 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,502,561 - 89,510,146 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,502,562 - 89,509,343 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,656,769 - 90,664,514 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,113,706 - 86,120,488 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,191,817 - 86,195,198 (-)NCBI
Celera180,674,540 - 80,681,283 (-)NCBICelera
Cytogenetic Map1q21NCBI
Fxyd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,436,334 - 4,444,315 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,437,280 - 4,444,315 (+)NCBIChiLan1.0ChiLan1.0
FXYD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,103,312 - 41,135,936 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,086,656 - 43,119,266 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,036,936 - 32,070,374 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11940,775,323 - 40,808,664 (+)NCBIpanpan1.1PanPan1.1panPan2
FXYD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,452,952 - 117,459,632 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,453,272 - 117,456,193 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,853,609 - 116,860,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,050,547 - 118,057,103 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,050,867 - 118,053,788 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,613,152 - 117,619,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,238,490 - 117,245,100 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,294,967 - 118,301,602 (-)NCBIUU_Cfam_GSD_1.0
Fxyd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,507,840 - 10,513,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365701,132,150 - 1,138,146 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365701,132,185 - 1,137,676 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FXYD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,647,466 - 44,654,374 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1644,647,771 - 44,654,377 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,111,472 - 40,118,054 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FXYD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,047,352 - 30,057,059 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,052,066 - 30,056,026 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,822,361 - 7,830,410 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fxyd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,385,138 - 8,391,670 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,385,138 - 8,391,723 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fxyd3
178 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2406
Count of miRNA genes:724
Interacting mature miRNAs:919
Transcripts:ENSMUST00000072331, ENSMUST00000165265, ENSMUST00000165465, ENSMUST00000165862, ENSMUST00000167369, ENSMUST00000169313, ENSMUST00000169424, ENSMUST00000170456, ENSMUST00000171359
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse

Markers in Region
X93038  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38731,070,570 - 31,070,645UniSTSGRCm38
MGSCv37731,855,589 - 31,855,664UniSTSGRCm37
Celera725,637,278 - 25,637,353UniSTS
Cytogenetic Map7B1UniSTS
cM Map715.2UniSTS
Whitehead/MRC_RH7421.05UniSTS
Whitehead_YAC7 UniSTS
X93038  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38731,070,570 - 31,070,668UniSTSGRCm38
MGSCv37731,855,589 - 31,855,687UniSTSGRCm37
Celera725,637,278 - 25,637,376UniSTS
Cytogenetic Map7B1UniSTS
Whitehead/MRC_RH7421.05UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000072331   ⟹   ENSMUSP00000144534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,769,963 - 30,776,094 (-)Ensembl
GRCm38.p6 Ensembl731,070,538 - 31,076,669 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,769,962 - 30,776,080 (-)Ensembl
GRCm38.p6 Ensembl731,070,537 - 31,076,655 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165465
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,769,962 - 30,770,462 (-)Ensembl
GRCm38.p6 Ensembl731,070,537 - 31,071,037 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,769,962 - 30,770,884 (-)Ensembl
GRCm38.p6 Ensembl731,070,537 - 31,071,459 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167369   ⟹   ENSMUSP00000130245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,767,597 - 30,776,129 (-)Ensembl
GRCm38.p6 Ensembl731,068,172 - 31,076,704 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,769,960 - 30,771,714 (-)Ensembl
GRCm38.p6 Ensembl731,070,535 - 31,072,289 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169424
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,770,965 - 30,776,079 (-)Ensembl
GRCm38.p6 Ensembl731,071,540 - 31,076,654 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,772,444 - 30,776,088 (-)Ensembl
GRCm38.p6 Ensembl731,073,019 - 31,076,663 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171359   ⟹   ENSMUSP00000128610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,770,309 - 30,774,377 (-)Ensembl
GRCm38.p6 Ensembl731,070,884 - 31,074,952 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,769,964 - 30,771,476 (-)Ensembl
GRCm38.p6 Ensembl731,070,539 - 31,072,051 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186929
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,771,441 - 30,776,070 (-)Ensembl
GRCm38.p6 Ensembl731,072,016 - 31,076,645 (-)Ensembl
RefSeq Acc Id: NM_008557   ⟹   NP_032583
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39730,769,960 - 30,776,122 (-)NCBI
GRCm38731,070,535 - 31,076,697 (-)NCBI
MGSCv37731,855,554 - 31,861,716 (-)RGD
Celera725,637,243 - 25,643,391 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_032583   ⟸   NM_008557
- Peptide Label: precursor
- UniProtKB: Q61835 (UniProtKB/Swiss-Prot),   Q3TLM3 (UniProtKB/TrEMBL),   E9Q966 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000128610   ⟸   ENSMUST00000171359
RefSeq Acc Id: ENSMUSP00000144534   ⟸   ENSMUST00000072331
RefSeq Acc Id: ENSMUSP00000130245   ⟸   ENSMUST00000167369

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61835-F1-model_v2 AlphaFold Q61835 1-88 view protein structure

Promoters
RGD ID:8663573
Promoter ID:EPDNEW_M9817
Type:initiation region
Name:Fxyd3_1
Description:Mus musculus FXYD domain-containing ion transport regulator 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38731,076,669 - 31,076,729EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107497 AgrOrtholog
Ensembl Genes ENSMUSG00000057092 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072331.13 UniProtKB/TrEMBL
  ENSMUST00000167369 ENTREZGENE
  ENSMUST00000167369.8 UniProtKB/Swiss-Prot
  ENSMUST00000171359.2 UniProtKB/TrEMBL
Gene3D-CATH Single helix bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FXYD_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion-transport_regulator_FXYD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17178 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107497 ENTREZGENE
NCBI Gene 17178 ENTREZGENE
PANTHER FXYD DOMAIN-CONTAINING ION TRANSPORT REGULATOR 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT GAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ATP1G1_PLM_MAT8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fxyd3 PhenoGen
PROSITE FXYD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YV80_MOUSE UniProtKB/TrEMBL
  E9Q966 ENTREZGENE, UniProtKB/TrEMBL
  FXYD3_MOUSE UniProtKB/Swiss-Prot
  Q3TLM3 ENTREZGENE, UniProtKB/TrEMBL
  Q61835 ENTREZGENE
  Q80UV3_MOUSE UniProtKB/TrEMBL