Sptbn4 (spectrin beta, non-erythrocytic 4) - Rat Genome Database

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Gene: Sptbn4 (spectrin beta, non-erythrocytic 4) Mus musculus
Analyze
Symbol: Sptbn4
Name: spectrin beta, non-erythrocytic 4
RGD ID: 1312270
MGI Page MGI
Description: Enables actin binding activity; ankyrin binding activity; and spectrin binding activity. Involved in clustering of voltage-gated sodium channels and protein localization to plasma membrane. Acts upstream of or within several processes, including adult walking behavior; regulation of heart contraction; and regulation of peptidyl-serine phosphorylation. Located in several cellular components, including axon; cell body fiber; and intercalated disc. Is active in juxtaparanode region of axon. Colocalizes with adherens junction. Is expressed in several structures, including liver; neural ectoderm; optic vesicle; spinal cord lateral wall; and spleen. Orthologous to human SPTBN4 (spectrin beta, non-erythrocytic 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700022P15Rik; 5830426A08Rik; beta-spectrin 4; dy; dyn; lnd; lumbosacral neuroaxonal dystrophy; neuroaxonal dystrophy; nmf26; nmf261; nmf379; quivering; qv; RO; ROSA62; S; Sp; SpbIV; spectrin beta 4; spectrin beta chain, non-erythrocytic 4; Spnb4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,055,808 - 27,147,128 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,055,808 - 27,147,111 (-)EnsemblGRCm39 Ensembl
GRCm38727,356,383 - 27,447,704 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,356,383 - 27,447,686 (-)EnsemblGRCm38mm10GRCm38
MGSCv37728,141,402 - 28,231,608 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36727,065,143 - 27,155,349 (-)NCBIMGSCv36mm8
Celera721,936,282 - 22,028,903 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1531270   PMID:1634998   PMID:2571571   PMID:3986566   PMID:4067076   PMID:9013777   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11086001   PMID:11294830   PMID:11528393  
PMID:11807096   PMID:12477932   PMID:13787376   PMID:14009198   PMID:14610273   PMID:15317849   PMID:15381686   PMID:16033895   PMID:16141072   PMID:16141073   PMID:16235133   PMID:16512683  
PMID:16687515   PMID:17197442   PMID:17223356   PMID:17283186   PMID:17976845   PMID:18550753   PMID:18786578   PMID:18796539   PMID:18799693   PMID:19156852   PMID:20188654   PMID:20877009  
PMID:20962009   PMID:21745462   PMID:21873635   PMID:23239625   PMID:23664614   PMID:23728480   PMID:24010186   PMID:24101510   PMID:24445605   PMID:24952961   PMID:25653379   PMID:26187182  
PMID:26671463   PMID:27356871   PMID:27507650   PMID:27979964   PMID:28582869   PMID:28671696   PMID:29861105   PMID:29907663   PMID:30226828   PMID:31550236   PMID:32052742   PMID:32425157  
PMID:33303745   PMID:33397944   PMID:33790315   PMID:34153319   PMID:35288568   PMID:35393465   PMID:36573432   PMID:36899883   PMID:37126382   PMID:37680049  


Genomics

Comparative Map Data
Sptbn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,055,808 - 27,147,128 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,055,808 - 27,147,111 (-)EnsemblGRCm39 Ensembl
GRCm38727,356,383 - 27,447,704 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,356,383 - 27,447,686 (-)EnsemblGRCm38mm10GRCm38
MGSCv37728,141,402 - 28,231,608 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36727,065,143 - 27,155,349 (-)NCBIMGSCv36mm8
Celera721,936,282 - 22,028,903 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.88NCBI
SPTBN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,467,001 - 40,576,464 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,466,241 - 40,576,464 (+)EnsemblGRCh38hg38GRCh38
GRCh371940,972,908 - 41,082,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,664,966 - 45,774,205 (+)NCBINCBI36Build 36hg18NCBI36
Build 341945,664,889 - 45,774,204NCBI
Celera1937,772,697 - 37,881,418 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,385,786 - 37,516,913 (+)NCBIHuRef
CHM1_11940,972,760 - 41,082,297 (+)NCBICHM1_1
T2T-CHM13v2.01943,287,653 - 43,397,080 (+)NCBIT2T-CHM13v2.0
Sptbn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8191,778,379 - 91,865,970 (-)NCBIGRCr8
mRatBN7.2182,650,750 - 82,738,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,650,751 - 82,737,228 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx188,053,405 - 88,140,330 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,540,213 - 96,627,370 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0189,809,261 - 89,896,187 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0184,168,494 - 84,254,679 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,168,495 - 84,254,645 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,379,609 - 85,467,354 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,436,626 - 82,523,827 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,514,738 - 82,605,646 (-)NCBI
Celera177,062,240 - 77,152,253 (-)NCBICelera
Cytogenetic Map1q21NCBI
Sptbn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955578731,814 - 810,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955578730,916 - 813,740 (-)NCBIChiLan1.0ChiLan1.0
SPTBN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,729,767 - 46,835,757 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,600,284 - 48,706,674 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,515,420 - 37,621,473 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,025,814 - 46,128,319 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,042,387 - 46,127,429 (+)Ensemblpanpan1.1panPan2
SPTBN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,167,251 - 113,243,071 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,168,484 - 113,240,934 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,568,583 - 112,645,005 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,764,931 - 113,841,421 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11113,324,527 - 113,400,713 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,956,408 - 113,033,209 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,950,745 - 114,027,169 (-)NCBIUU_Cfam_GSD_1.0
Sptbn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,403,074 - 14,475,550 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,827,572 - 2,903,655 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,831,132 - 2,903,619 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPTBN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,729,419 - 48,812,796 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,729,839 - 48,812,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,478,339 - 44,510,832 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPTBN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1634,926,413 - 35,036,611 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl634,930,519 - 35,035,719 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607313,042,764 - 13,159,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sptbn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624925454,134 - 529,108 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624925454,092 - 529,122 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sptbn4
3012 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2677
Count of miRNA genes:542
Interacting mature miRNAs:675
Transcripts:ENSMUST00000011895, ENSMUST00000108362, ENSMUST00000108363, ENSMUST00000108364, ENSMUST00000137414, ENSMUST00000138087, ENSMUST00000152572, ENSMUST00000172269
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse

Markers in Region
RH118306  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38727,425,904 - 27,426,059UniSTSGRCm38
MGSCv37728,210,923 - 28,211,078UniSTSGRCm37
Celera722,008,267 - 22,008,422UniSTS
Cytogenetic Map7A3UniSTS
cM Map77.5UniSTS
Whitehead/MRC_RH7340.1UniSTS
Spnb4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A3UniSTS
cM Map77.5UniSTS
cM Map715.88UniSTS
MARC_14429-14430:1010078261:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38727,356,413 - 27,356,866UniSTSGRCm38
MGSCv37728,141,432 - 28,141,885UniSTSGRCm37
Celera721,936,312 - 21,936,765UniSTS
Cytogenetic Map7A3UniSTS
cM Map77.5UniSTS
G67801  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38727,359,756 - 27,360,007UniSTSGRCm38
MGSCv37728,144,775 - 28,145,026UniSTSGRCm37
Celera721,939,652 - 21,939,903UniSTS
Cytogenetic Map7A3UniSTS
cM Map77.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001199234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001199235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001199236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB055618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB055619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB055620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB055621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF203696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH010690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY032655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000011895   ⟹   ENSMUSP00000011895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl727,055,808 - 27,146,024 (-)Ensembl
GRCm38.p6 Ensembl727,356,383 - 27,446,599 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108362   ⟹   ENSMUSP00000103999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl727,055,808 - 27,093,931 (-)Ensembl
GRCm38.p6 Ensembl727,356,383 - 27,394,506 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108363   ⟹   ENSMUSP00000104000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl727,055,808 - 27,095,978 (-)Ensembl
GRCm38.p6 Ensembl727,356,383 - 27,396,553 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108364   ⟹   ENSMUSP00000104001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl727,055,808 - 27,095,623 (-)Ensembl
GRCm38.p6 Ensembl727,356,383 - 27,396,198 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl727,145,379 - 27,145,942 (-)Ensembl
GRCm38.p6 Ensembl727,445,954 - 27,446,517 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152572   ⟹   ENSMUSP00000120738
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl727,133,626 - 27,147,111 (-)Ensembl
GRCm38.p6 Ensembl727,434,201 - 27,447,686 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172269   ⟹   ENSMUSP00000132807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl727,055,812 - 27,147,111 (-)Ensembl
GRCm38.p6 Ensembl727,356,387 - 27,447,686 (-)Ensembl
RefSeq Acc Id: NM_001199234   ⟹   NP_001186163
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39727,055,808 - 27,095,623 (-)NCBI
GRCm38727,356,383 - 27,396,198 (-)NCBI
Celera721,936,282 - 22,028,903 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001199235   ⟹   NP_001186164
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39727,055,808 - 27,093,931 (-)NCBI
GRCm38727,356,383 - 27,394,506 (-)NCBI
Celera721,936,282 - 22,028,903 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001199236   ⟹   NP_001186165
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39727,055,808 - 27,095,978 (-)NCBI
GRCm38727,356,383 - 27,396,553 (-)NCBI
Celera721,936,282 - 22,028,903 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_032610   ⟹   NP_115999
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39727,055,808 - 27,146,014 (-)NCBI
GRCm38727,356,383 - 27,446,589 (-)NCBI
MGSCv37728,141,402 - 28,231,608 (-)RGD
Celera721,936,282 - 22,028,903 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006540437   ⟹   XP_006540500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39727,055,808 - 27,147,128 (-)NCBI
GRCm38727,356,383 - 27,447,704 (-)NCBI
Sequence:
RefSeq Acc Id: NP_115999   ⟸   NM_032610
- Peptide Label: isoform sigma1
- UniProtKB: E9PX29 (UniProtKB/TrEMBL),   Q8VIE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186165   ⟸   NM_001199236
- Peptide Label: isoform sigma6
- UniProtKB: E9PZC2 (UniProtKB/TrEMBL),   Q8VBX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186163   ⟸   NM_001199234
- Peptide Label: isoform sigma6
- UniProtKB: E9PZC2 (UniProtKB/TrEMBL),   Q8VBX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186164   ⟸   NM_001199235
- Peptide Label: isoform sigma6
- UniProtKB: E9PZC2 (UniProtKB/TrEMBL),   Q8VBX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006540500   ⟸   XM_006540437
- Peptide Label: isoform X1
- UniProtKB: Q8VIE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000011895   ⟸   ENSMUST00000011895
RefSeq Acc Id: ENSMUSP00000132807   ⟸   ENSMUST00000172269
RefSeq Acc Id: ENSMUSP00000103999   ⟸   ENSMUST00000108362
RefSeq Acc Id: ENSMUSP00000104001   ⟸   ENSMUST00000108364
RefSeq Acc Id: ENSMUSP00000104000   ⟸   ENSMUST00000108363
RefSeq Acc Id: ENSMUSP00000120738   ⟸   ENSMUST00000152572
Protein Domains
Calponin-homology (CH)   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PX29-F1-model_v2 AlphaFold E9PX29 1-2561 view protein structure

Promoters
RGD ID:6892364
Promoter ID:EPDNEW_M9633
Type:single initiation site
Name:Sptbn4_2
Description:Mus musculus spectrin beta, non-erythrocytic 4 , transcript variantsigma1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9634  EPDNEW_M9635  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38727,396,118 - 27,396,178EPDNEW
RGD ID:6892366
Promoter ID:EPDNEW_M9634
Type:initiation region
Name:Sptbn4_1
Description:Mus musculus spectrin beta, non-erythrocytic 4 , transcript variantsigma1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9633  EPDNEW_M9635  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38727,396,591 - 27,396,651EPDNEW
RGD ID:6892368
Promoter ID:EPDNEW_M9635
Type:multiple initiation site
Name:Sptbn4_3
Description:Mus musculus spectrin beta, non-erythrocytic 4 , transcript variantsigma1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9633  EPDNEW_M9634  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38727,446,583 - 27,446,643EPDNEW
RGD ID:6848214
Promoter ID:MM_ACW:43963
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:SPNB4.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36728,149,204 - 28,149,704 (-)MPROMDB
RGD ID:6842094
Promoter ID:MM_KWN:49550
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC009FWB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36728,193,626 - 28,194,126 (-)MPROMDB
RGD ID:6842113
Promoter ID:MM_KWN:49552
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:ENSMUST00000053562,   OTTMUST00000058059
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36728,231,821 - 28,232,321 (-)MPROMDB
RGD ID:6842093
Promoter ID:MM_KWN:49553
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108358,   OTTMUST00000056315,   OTTMUST00000056317,   OTTMUST00000058058,   OTTMUST00000058060
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36728,232,819 - 28,233,319 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890574 AgrOrtholog
Ensembl Genes ENSMUSG00000011751 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000011895 ENTREZGENE
  ENSMUST00000011895.14 UniProtKB/TrEMBL
  ENSMUST00000108362 ENTREZGENE
  ENSMUST00000108362.8 UniProtKB/TrEMBL
  ENSMUST00000108363 ENTREZGENE
  ENSMUST00000108363.8 UniProtKB/TrEMBL
  ENSMUST00000108364 ENTREZGENE
  ENSMUST00000108364.8 UniProtKB/TrEMBL
  ENSMUST00000152572.2 UniProtKB/TrEMBL
  ENSMUST00000172269.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/TrEMBL
  Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  PH_9 UniProtKB/TrEMBL
  PH_dom-spectrin-type UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_bsu UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
KEGG Report mmu:80297 UniProtKB/TrEMBL
MGD MGI:1890574 ENTREZGENE
NCBI Gene 80297 ENTREZGENE
PANTHER SPECTRIN BETA CHAIN, NON-ERYTHROCYTIC 4 UniProtKB/TrEMBL
  SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN UniProtKB/TrEMBL
Pfam PF00307 UniProtKB/TrEMBL
  PH_9 UniProtKB/TrEMBL
  Spectrin UniProtKB/TrEMBL
PhenoGen Sptbn4 PhenoGen
PIRSF Spectrin_beta_subunit UniProtKB/TrEMBL
PRINTS SPECTRINPH UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART SM00033 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  Spectrin repeat UniProtKB/TrEMBL
UniProt D3YWH8_MOUSE UniProtKB/TrEMBL
  E9PX29 ENTREZGENE, UniProtKB/TrEMBL
  E9PZC2 ENTREZGENE, UniProtKB/TrEMBL
  Q8VBX2 ENTREZGENE, UniProtKB/TrEMBL
  Q8VIE5 ENTREZGENE, UniProtKB/TrEMBL
  Q91ZE6_MOUSE UniProtKB/TrEMBL
  Q9EQM0_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-25 Sptbn4  spectrin beta, non-erythrocytic 4  Spnb4  spectrin beta 4  Symbol and/or name change 5135510 APPROVED