Erf (Ets2 repressor factor) - Rat Genome Database

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Gene: Erf (Ets2 repressor factor) Mus musculus
Analyze
Symbol: Erf
Name: Ets2 repressor factor
RGD ID: 1323739
MGI Page MGI
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Acts upstream of or within chorio-allantoic fusion; ectodermal cell differentiation; and trophoblast giant cell differentiation. Located in nucleus. Is expressed in several structures, including adipose tissue; alimentary system; genitourinary system; hemolymphoid system gland; and nervous system. Human ortholog(s) of this gene implicated in craniosynostosis. Orthologous to human ERF (ETS2 repressor factor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Est2 repressor factor; ETS domain-containing transcription factor ERF
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,941,985 - 24,950,522 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,941,986 - 24,950,186 (-)EnsemblGRCm39 Ensembl
GRCm38725,242,560 - 25,251,104 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,242,561 - 25,250,761 (-)EnsemblGRCm38mm10GRCm38
MGSCv37726,027,579 - 26,035,777 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,951,320 - 24,959,425 (-)NCBIMGSCv36mm8
Celera719,858,364 - 19,866,638 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IDA)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9136988   PMID:10349636   PMID:10913304   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:16141072   PMID:16141073   PMID:17502352   PMID:17507653   PMID:17699159   PMID:17907201   PMID:17967808   PMID:18287559   PMID:18799693   PMID:19741146   PMID:20059953   PMID:20412781  
PMID:20932939   PMID:21267068   PMID:21873635   PMID:22056786   PMID:22875994   PMID:22988430   PMID:23354439   PMID:24194600   PMID:26097038   PMID:27793834   PMID:28244611   PMID:28378742  
PMID:28614298   PMID:28694332   PMID:29650524   PMID:35258130   PMID:37175668  


Genomics

Comparative Map Data
Erf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,941,985 - 24,950,522 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,941,986 - 24,950,186 (-)EnsemblGRCm39 Ensembl
GRCm38725,242,560 - 25,251,104 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,242,561 - 25,250,761 (-)EnsemblGRCm38mm10GRCm38
MGSCv37726,027,579 - 26,035,777 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,951,320 - 24,959,425 (-)NCBIMGSCv36mm8
Celera719,858,364 - 19,866,638 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.73NCBI
ERF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381942,247,569 - 42,255,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1942,247,569 - 42,255,128 (-)EnsemblGRCh38hg38GRCh38
GRCh371942,751,721 - 42,759,280 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,443,557 - 47,451,149 (-)NCBINCBI36Build 36hg18NCBI36
Build 341947,443,561 - 47,451,113NCBI
Celera1939,552,513 - 39,560,105 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1939,182,130 - 39,189,922 (-)NCBIHuRef
CHM1_11942,753,399 - 42,760,960 (-)NCBICHM1_1
T2T-CHM13v2.01945,066,943 - 45,074,502 (-)NCBIT2T-CHM13v2.0
Erf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,957,760 - 89,966,213 (-)NCBIGRCr8
mRatBN7.2180,829,935 - 80,838,388 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,829,935 - 80,838,388 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,222,152 - 86,230,605 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,773,296 - 94,781,750 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,977,929 - 87,986,382 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,112,449 - 82,120,902 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,112,449 - 82,120,902 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,378,953 - 83,382,937 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,518,385 - 80,527,142 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,597,483 - 80,605,113 (-)NCBI
Celera175,273,608 - 75,281,418 (-)NCBICelera
Cytogenetic Map1q21NCBI
Erf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555654,414 - 665,277 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955555654,945 - 661,097 (+)NCBIChiLan1.0ChiLan1.0
ERF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22048,353,012 - 48,360,570 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11950,221,637 - 50,229,198 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01939,135,757 - 39,143,343 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11947,728,192 - 47,735,808 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,728,192 - 47,735,808 (-)Ensemblpanpan1.1panPan2
ERF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,117,338 - 112,124,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,117,141 - 112,124,077 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,539,322 - 111,550,990 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,725,792 - 112,737,462 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,729,426 - 112,736,627 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,279,998 - 112,291,665 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,915,949 - 111,927,016 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,842,484 - 112,854,156 (+)NCBIUU_Cfam_GSD_1.0
Erf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,908,148 - 15,915,806 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706255,407 - 263,179 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706255,479 - 263,154 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,678,888 - 49,685,538 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,678,858 - 49,686,422 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,597,124 - 45,604,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,452,604 - 36,460,188 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl636,452,577 - 36,460,122 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607314,696,845 - 14,704,450 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907499,883 - 507,629 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907499,913 - 506,719 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Erf
232 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:919
Count of miRNA genes:534
Interacting mature miRNAs:611
Transcripts:ENSMUST00000045847, ENSMUST00000116343
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse

Markers in Region
RH79119  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38725,243,353 - 25,243,485UniSTSGRCm38
MGSCv37726,028,372 - 26,028,504UniSTSGRCm37
Celera719,859,157 - 19,859,289UniSTS
Cytogenetic Map7A3UniSTS
cM Map76.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000045847   ⟹   ENSMUSP00000041912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,941,986 - 24,950,186 (-)Ensembl
GRCm38.p6 Ensembl725,242,561 - 25,250,761 (-)Ensembl
RefSeq Acc Id: ENSMUST00000116343   ⟹   ENSMUSP00000112046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,944,872 - 24,950,155 (-)Ensembl
GRCm38.p6 Ensembl725,245,447 - 25,250,730 (-)Ensembl
RefSeq Acc Id: NM_001412415   ⟹   NP_001399344
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,941,985 - 24,947,854 (-)NCBI
RefSeq Acc Id: NM_001412417   ⟹   NP_001399346
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,941,985 - 24,950,522 (-)NCBI
RefSeq Acc Id: NM_001412418   ⟹   NP_001399347
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,941,985 - 24,949,875 (-)NCBI
RefSeq Acc Id: NM_010155   ⟹   NP_034285
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,941,985 - 24,950,154 (-)NCBI
GRCm38725,242,560 - 25,250,758 (-)ENTREZGENE
MGSCv37726,027,579 - 26,035,777 (-)RGD
Celera719,858,364 - 19,866,638 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_034285   ⟸   NM_010155
- Peptide Label: isoform b
- UniProtKB: Q7TSJ1 (UniProtKB/Swiss-Prot),   Q6P544 (UniProtKB/Swiss-Prot),   Q3TXK4 (UniProtKB/Swiss-Prot),   P70459 (UniProtKB/Swiss-Prot),   A0A0R4J0I0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000041912   ⟸   ENSMUST00000045847
RefSeq Acc Id: ENSMUSP00000112046   ⟸   ENSMUST00000116343
RefSeq Acc Id: NP_001399346   ⟸   NM_001412417
- Peptide Label: isoform c
- UniProtKB: Q7TSJ1 (UniProtKB/Swiss-Prot),   Q6P544 (UniProtKB/Swiss-Prot),   Q3TXK4 (UniProtKB/Swiss-Prot),   P70459 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399347   ⟸   NM_001412418
- Peptide Label: isoform c
- UniProtKB: Q7TSJ1 (UniProtKB/Swiss-Prot),   Q6P544 (UniProtKB/Swiss-Prot),   Q3TXK4 (UniProtKB/Swiss-Prot),   P70459 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399344   ⟸   NM_001412415
- Peptide Label: isoform a
- UniProtKB: Q7TSJ1 (UniProtKB/Swiss-Prot),   Q6P544 (UniProtKB/Swiss-Prot),   Q3TXK4 (UniProtKB/Swiss-Prot),   P70459 (UniProtKB/Swiss-Prot)
Protein Domains
ETS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70459-F1-model_v2 AlphaFold P70459 1-551 view protein structure

Promoters
RGD ID:6892248
Promoter ID:EPDNEW_M9575
Type:multiple initiation site
Name:Erf_1
Description:Mus musculus Ets2 repressor factor , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38725,250,729 - 25,250,789EPDNEW
RGD ID:6848127
Promoter ID:MM_ACW:43888
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver,   MEF_B4
Transcripts:ERF.CSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36726,031,346 - 26,031,846 (-)MPROMDB
RGD ID:6841056
Promoter ID:MM_KWN:49429
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:ENSMUST00000116343,   UC009FRZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36726,035,571 - 26,036,672 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109637 AgrOrtholog
Ensembl Genes ENSMUSG00000040857 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000045847 ENTREZGENE
  ENSMUST00000045847.15 UniProtKB/TrEMBL
  ENSMUST00000116343.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ets_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13875 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109637 ENTREZGENE
NCBI Gene 13875 ENTREZGENE
PANTHER PTHR11849 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11849:SF31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ets UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Erf PhenoGen
PRINTS ETSDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ETS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J0I0 ENTREZGENE, UniProtKB/TrEMBL
  D3YXK6_MOUSE UniProtKB/TrEMBL
  ERF_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TXK4 ENTREZGENE
  Q6P544 ENTREZGENE
  Q7TSJ1 ENTREZGENE
UniProt Secondary Q3TXK4 UniProtKB/Swiss-Prot
  Q6P544 UniProtKB/Swiss-Prot
  Q7TSJ1 UniProtKB/Swiss-Prot