Slc1a5 (solute carrier family 1 (neutral amino acid transporter), member 5) - Rat Genome Database

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Gene: Slc1a5 (solute carrier family 1 (neutral amino acid transporter), member 5) Mus musculus
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Symbol: Slc1a5
Name: solute carrier family 1 (neutral amino acid transporter), member 5
RGD ID: 1550772
MGI Page MGI
Description: Enables L-aspartate transmembrane transporter activity and neutral L-amino acid transmembrane transporter activity. Involved in L-aspartate import across plasma membrane and transport across blood-brain barrier. Located in basal plasma membrane. Is active in plasma membrane. Is expressed in several structures, including alimentary system; brain; genitourinary system; liver; and respiratory system. Orthologous to human SLC1A5 (solute carrier family 1 member 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AAAT; ASC; ASC-like Na(+)-dependent neutral amino acid transporter ASCT2; ASCT2; ATB(0); ATBO; insulin-activated amino acid transporter; M7V1; M7VS1; MGC46952; neutral amino acid transporter B(0); R16; RDRC; Slc1a7; sodium-dependent neutral amino acid transporter type 2; solute carrier family 1 member 5; solute carrier family 1, member 7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm19187  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,515,259 - 16,532,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,515,265 - 16,532,199 (+)EnsemblGRCm39 Ensembl
GRCm38716,781,334 - 16,798,274 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,781,340 - 16,798,274 (+)EnsemblGRCm38mm10GRCm38
MGSCv37717,366,695 - 17,383,623 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,939,929 - 15,956,765 (+)NCBIMGSCv36mm8
Celera713,979,416 - 13,996,329 (+)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Term
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Original Reference(s)
Slc1a5MouseCOVID-19  ISOSLC1A5 (Homo sapiens)9068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
Slc1a5Mouseesophagus squamous cell carcinoma  ISOSLC1A5 (Homo sapiens)151361149protein:increased expression:esophagusRGD 
Slc1a5Mouseesophagus squamous cell carcinoma disease_progressionISOSLC1A5 (Homo sapiens)11532833 RGD 
Slc1a5Mouselung adenocarcinoma disease_progressionISOSLC1A5 (Homo sapiens)151361150 RGD 
Slc1a5Mousepulmonary hypertension  ISOSLC1A5 (Homo sapiens)151361111protein:increased expression:myocytes plasma membrane and right ventricleRGD 
Slc1a5MouseRight Ventricular Hypertrophy  ISOSlc1a5 (Rattus norvegicus)151361111mRNA:increased expression:right ventricleRGD 
Slc1a5Mousetongue squamous cell carcinoma disease_progressionISOSLC1A5 (Homo sapiens)151361157 RGD 
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Original Reference(s)
Slc1a5Mousehereditary spastic paraplegia  ISOSLC1A5 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegiaClinVar 
Object Symbol
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Original Reference(s)
Slc1a5Mousepancreatic cancer  ISOSLC1A5 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:35929395

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Object Symbol
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Original Reference(s)
Slc1a5Mouse(-)-alpha-phellandrene decreases expressionISOSLC1A5 (Homo sapiens)6480464alpha phellandrene results in decreased expression of SLC1A5 mRNACTDPMID:25075043
Slc1a5Mouse(S)-colchicine decreases expressionISOSLC1A5 (Homo sapiens)6480464Colchicine results in decreased expression of SLC1A5 mRNACTDPMID:24211769
Slc1a5Mouse1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionISOSLC1A5 (Homo sapiens)6480464o and p'-DDT results in increased expression of SLC1A5 mRNACTDPMID:19371625
Slc1a5Mouse1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsEXP 6480464[2 more ...CTDPMID:25510870
Slc1a5Mouse1,2-dichloroethane decreases expressionEXP 6480464ethylene dichloride results in decreased expression of SLC1A5 mRNACTDPMID:28960355
Slc1a5Mouse1,2-dimethylhydrazine multiple interactionsEXP 6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SLC1A5 mRNACTDPMID:22206623
Slc1a5Mouse1-naphthyl isothiocyanate increases expressionISOSlc1a5 (Rattus norvegicus)64804641-Naphthylisothiocyanate results in increased expression of SLC1A5 mRNACTDPMID:20551477
Slc1a5Mouse17alpha-ethynylestradiol affects expressionISOSlc1a5 (Rattus norvegicus)6480464Ethinyl Estradiol affects the expression of SLC1A5 mRNACTDPMID:20170705
Slc1a5Mouse17alpha-ethynylestradiol increases expressionISOSLC1A5 (Homo sapiens)6480464Ethinyl Estradiol results in increased expression of SLC1A5 mRNACTDPMID:18936297
Slc1a5Mouse17alpha-ethynylestradiol affects expressionISOSLC1A5 (Homo sapiens)6480464Ethinyl Estradiol affects the expression of SLC1A5 mRNACTDPMID:20170705
Slc1a5Mouse17beta-estradiol increases expressionISOSLC1A5 (Homo sapiens)6480464Estradiol results in increased expression of SLC1A5 mRNACTDPMID:23019147 more ...
Slc1a5Mouse17beta-estradiol decreases expressionISOSLC1A5 (Homo sapiens)6480464Estradiol results in decreased expression of SLC1A5 proteinCTDPMID:33181973
Slc1a5Mouse17beta-estradiol increases expressionISOSlc1a5 (Rattus norvegicus)6480464Estradiol results in increased expression of SLC1A5 mRNA and Estradiol results in increased expression of SLC1A5 proteinCTDPMID:32145629
Slc1a5Mouse2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsEXP 6480464[2 more ...CTDPMID:25510870
Slc1a5Mouse2,2',5,5'-tetrachlorobiphenyl multiple interactionsEXP 6480464[2 more ...CTDPMID:25510870
Slc1a5Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of SLC1A5 mRNACTDPMID:21570461 and PMID:26377647
Slc1a5Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOSlc1a5 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of SLC1A5 mRNACTDPMID:33387578 and PMID:34747641
Slc1a5Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of SLC1A5 mRNACTDPMID:26290441 and PMID:27562557
Slc1a5Mouse2,4,4'-trichlorobiphenyl multiple interactionsEXP 6480464[2 more ...CTDPMID:25510870
Slc1a5Mouse2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISOSLC1A5 (Homo sapiens)64804642 more ...CTDPMID:26705709

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Biological Process
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Original Reference(s)
Slc1a5Mouseacidic amino acid transport involved_inIEAGO:00151722290270 GOCGO_REF:0000108
Slc1a5Mouseerythrocyte differentiation involved_inISOUniProtKB:Q157582290270 GO_CentralGO_REF:0000119
Slc1a5Mouseglutamine secretion  ISOSlc1a5 (Rattus norvegicus)9068941 RGDPMID:10537079 and REF_RGD_ID:1299491
Slc1a5Mouseglutamine secretion involved_inISOSlc1a5 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc1a5Mouseglutamine transport involved_inISOUniProtKB:Q157582290270 GO_CentralGO_REF:0000119
Slc1a5Mouseglutamine transport involved_inISSUniProtKB:Q157582290270 UniProtGO_REF:0000024
Slc1a5MouseL-aspartate import across plasma membrane involved_inIDA 2290270 PMID:14622120ARUK-UCLPMID:14622120
Slc1a5MouseL-aspartate import across plasma membrane involved_inISOSlc1a5 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc1a5MouseL-aspartate import across plasma membrane involved_inIBAPANTHER:PTN002632768 more ...2290270 GO_CentralGO_REF:0000033
Slc1a5MouseL-glutamine import across plasma membrane  ISOSlc1a5 (Rattus norvegicus)9068941 RGDPMID:10537079 and REF_RGD_ID:1299491
Slc1a5MouseL-glutamine import across plasma membrane involved_inISOSlc1a5 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc1a5MouseL-serine transport  ISOSlc1a5 (Rattus norvegicus)9068941astrocytesRGDPMID:12885409 and REF_RGD_ID:1642943
Slc1a5MouseL-serine transport involved_inISOSlc1a5 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc1a5Mouseneutral amino acid transport involved_inISOUniProtKB:Q157582290270 GO_CentralGO_REF:0000119
Slc1a5Mouseneutral amino acid transport involved_inISOSlc1a5 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc1a5Mouseprotein homotrimerization involved_inISOUniProtKB:Q157582290270 GO_CentralGO_REF:0000119
Slc1a5Mouseprotein homotrimerization involved_inISSUniProtKB:Q157582290270 UniProtGO_REF:0000024
Slc1a5Mousetransport across blood-brain barrier involved_inIDA 2290270 PMID:14622120ARUK-UCLPMID:14622120
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Cellular Component
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Original Reference(s)
Slc1a5Mousebasal plasma membrane located_inIDA 2290270 PMID:14622120ARUK-UCLPMID:14622120
Slc1a5Mousecentriolar satellite located_inISOSLC1A5 (Homo sapiens)9068941 HPAGO_REF:0000052
Slc1a5Mouseciliary basal body located_inISOSLC1A5 (Homo sapiens)9068941 HPAGO_REF:0000052
Slc1a5Mousemelanosome located_inIEAUniProtKB-SubCell:SL-01612290270 UniProtGO_REF:0000044
Slc1a5Mousemembrane located_inISSUniProtKB:Q157582290270 UniProtGO_REF:0000024
Slc1a5Mousemembrane located_inISOUniProtKB:Q157582290270 GO_CentralGO_REF:0000119
Slc1a5Mouseplasma membrane is_active_inIDA 2290270 PMID:14622120ARUK-UCLPMID:14622120
Slc1a5Mouseplasma membrane located_inISOUniProtKB:Q157582290270 GO_CentralGO_REF:0000119
Slc1a5Mouseplasma membrane located_inISSUniProtKB:Q157582290270 UniProtGO_REF:0000024
Slc1a5Mouseplasma membrane is_active_inIBAPANTHER:PTN000238242 more ...2290270 GO_CentralGO_REF:0000033
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Molecular Function
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Original Reference(s)
Slc1a5Mouseantiporter activity enablesIEAUniProtKB-KW:KW-00502290270 UniProtGO_REF:0000043
Slc1a5Mouseantiporter activity enablesISOUniProtKB:Q157582290270 GO_CentralGO_REF:0000119
Slc1a5Mouseantiporter activity enablesISOSlc1a5 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc1a5MouseL-aspartate transmembrane transporter activity enablesIDA 2290270 PMID:14622120ARUK-UCLPMID:14622120
Slc1a5MouseL-aspartate transmembrane transporter activity enablesISOSlc1a5 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc1a5MouseL-aspartate transmembrane transporter activity enablesIBAPANTHER:PTN002632768 more ...2290270 GO_CentralGO_REF:0000033
Slc1a5MouseL-glutamine transmembrane transporter activity enablesISOUniProtKB:Q157582290270 GO_CentralGO_REF:0000119
Slc1a5MouseL-glutamine transmembrane transporter activity enablesISSUniProtKB:Q157582290270 UniProtGO_REF:0000024
Slc1a5MouseL-serine transmembrane transporter activity enablesISOSlc1a5 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc1a5MouseL-serine transmembrane transporter activity  ISOSlc1a5 (Rattus norvegicus)9068941astrocytesRGDPMID:12885409 and REF_RGD_ID:1642943
Slc1a5Mouseligand-gated channel activity enablesISOSlc1a5 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc1a5Mousemetal ion binding enablesIEAUniProtKB-KW:KW-04792290270 UniProtGO_REF:0000043
Slc1a5Mouseneutral L-amino acid transmembrane transporter activity enablesIBAPANTHER:PTN000238242 more ...2290270 GO_CentralGO_REF:0000033
Slc1a5Mouseneutral L-amino acid transmembrane transporter activity enablesIDA 2290270 PMID:10933718MGIPMID:10933718
Slc1a5Mouseprotein binding enablesISOUniProtKB:Q999429068941 PMID:25759021IntActPMID:25759021
Slc1a5Mouseprotein binding enablesISOUniProtKB:A5PKU2 more ...9068941 PMID:32296183IntActPMID:32296183
Slc1a5Mouseprotein binding enablesISOUniProtKB:M5A8F19068941 PMID:23492904UniProtPMID:23492904
Slc1a5Mousesymporter activity enablesIEAUniProtKB-KW:KW-07692290270 UniProtGO_REF:0000043
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Imported Annotations - SMPDB


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Reference Title
Reference Citation
1. Tissue-based metabolomics reveals metabolic biomarkers and potential therapeutic targets for esophageal squamous cell carcinoma. Chen Z, etal., J Pharm Biomed Anal. 2021 Apr 15;197:113937. doi: 10.1016/j.jpba.2021.113937. Epub 2021 Feb 5.
2. Clinicopathological significance of LAT1 and ASCT2 in patients with surgically resected esophageal squamous cell carcinoma. Honjo H, etal., J Surg Oncol. 2016 Mar;113(4):381-9. doi: 10.1002/jso.24160. Epub 2016 Mar 3.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Cardiac glutaminolysis: a maladaptive cancer metabolism pathway in the right ventricle in pulmonary hypertension. Piao L, etal., J Mol Med (Berl). 2013 Oct;91(10):1185-97. doi: 10.1007/s00109-013-1064-7. Epub 2013 Jun 21.
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Prognostic significance of amino-acid transporter expression (LAT1, ASCT2, and xCT) in surgically resected tongue cancer. Toyoda M, etal., Br J Cancer. 2014 May 13;110(10):2506-13. doi: 10.1038/bjc.2014.178. Epub 2014 Apr 24.
9. Clinical significance of coexpression of L-type amino acid transporter 1 (LAT1) and ASC amino acid transporter 2 (ASCT2) in lung adenocarcinoma. Yazawa T, etal., Am J Transl Res. 2015 Jun 15;7(6):1126-39. eCollection 2015.
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PMID:7702599   PMID:8662767   PMID:10349636   PMID:10725249   PMID:10922068   PMID:10933718   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12050356   PMID:12477932   PMID:12505721  
PMID:12584318   PMID:12904583   PMID:14563674   PMID:14622120   PMID:14681479   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18973680   PMID:19012749   PMID:19382234   PMID:21267068  
PMID:21812036   PMID:21873635   PMID:24792914   PMID:27143784   PMID:28553292   PMID:30171039   PMID:30185558   PMID:30801233   PMID:32518258   PMID:32554809   PMID:34301346   PMID:34647520  
PMID:35237783   PMID:36114006   PMID:36462557   PMID:36654781   PMID:37578594   PMID:38058065   PMID:38159852   PMID:38844111   PMID:39147774   PMID:39255693  



Slc1a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,515,259 - 16,532,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,515,265 - 16,532,199 (+)EnsemblGRCm39 Ensembl
GRCm38716,781,334 - 16,798,274 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,781,340 - 16,798,274 (+)EnsemblGRCm38mm10GRCm38
MGSCv37717,366,695 - 17,383,623 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,939,929 - 15,956,765 (+)NCBIMGSCv36mm8
Celera713,979,416 - 13,996,329 (+)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
SLC1A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,774,883 - 46,788,594 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,774,883 - 46,788,594 (-)EnsemblGRCh38hg38GRCh38
GRCh371947,278,140 - 47,291,851 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,969,980 - 51,983,653 (-)NCBINCBI36Build 36hg18NCBI36
Build 341951,969,981 - 51,983,653NCBI
Celera1944,082,395 - 44,096,097 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1943,702,915 - 43,716,958 (-)NCBIHuRef
CHM1_11947,280,017 - 47,293,715 (-)NCBICHM1_1
T2T-CHM13v2.01949,600,712 - 49,614,415 (-)NCBIT2T-CHM13v2.0
Slc1a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,584,949 - 86,599,052 (+)NCBIGRCr8
mRatBN7.2177,456,849 - 77,470,952 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,456,694 - 77,470,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,837,237 - 82,851,346 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,401,281 - 91,415,390 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,592,328 - 84,606,437 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,710,686 - 78,724,789 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,710,539 - 78,724,794 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,957,648 - 79,971,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,111,082 - 77,125,166 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,189,192 - 77,203,276 (+)NCBI
Celera171,941,916 - 71,956,019 (+)NCBICelera
Cytogenetic Map1q21NCBI
Slc1a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955574798,004 - 806,631 (-)NCBIChiLan1.0ChiLan1.0
SLC1A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,922,399 - 52,939,392 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11954,793,572 - 54,807,596 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01943,765,001 - 43,778,981 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11952,294,052 - 52,308,159 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,294,655 - 52,307,529 (-)Ensemblpanpan1.1panPan2
SLC1A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,150,205 - 109,161,375 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,150,205 - 109,161,141 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,630,028 - 108,640,938 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,676,678 - 109,687,827 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,676,206 - 109,688,731 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,353,817 - 109,364,724 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,988,004 - 108,998,931 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,856,686 - 109,867,593 (+)NCBIUU_Cfam_GSD_1.0
Slc1a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934918,980,757 - 18,992,747 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936664598,468 - 610,698 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936664599,012 - 610,689 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC1A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,647,438 - 52,661,459 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,647,432 - 52,661,464 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,026,660 - 48,032,162 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC1A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,139,417 - 40,150,312 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607319,833,875 - 19,850,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc1a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,831,368 - 6,838,593 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,830,799 - 6,839,118 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Slc1a5
1042 total Variants

Predicted Target Of
Summary Value
Count of predictions:1335
Count of miRNA genes:680
Interacting mature miRNAs:821
Transcripts:ENSMUST00000108496, ENSMUST00000127401, ENSMUST00000131664, ENSMUST00000134407, ENSMUST00000135817, ENSMUST00000141349, ENSMUST00000147814
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse

1 to 10 of 21 rows
BB222471  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,790,315 - 16,790,462UniSTSGRCm38
MGSCv37717,375,664 - 17,375,811UniSTSGRCm37
Celera713,988,366 - 13,988,513UniSTS
Cytogenetic Map7A2UniSTS
Whitehead/MRC_RH7203.98UniSTS
UniSTS:235608  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,797,829 - 16,798,263UniSTSGRCm38
MGSCv37717,383,178 - 17,383,612UniSTSGRCm37
Celera713,995,884 - 13,996,318UniSTS
Cytogenetic Map7A2UniSTS
Slc1a5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A2UniSTS
cM Map79.15UniSTS






1 to 25 of 25 rows
RefSeq Transcripts NM_009201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_391052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC148981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF080267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D85044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L42115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 25 of 25 rows

Ensembl Acc Id: ENSMUST00000108496   ⟹   ENSMUSP00000104136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,515,265 - 16,532,199 (+)Ensembl
GRCm38.p6 Ensembl716,781,340 - 16,798,274 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,515,293 - 16,532,199 (+)Ensembl
GRCm38.p6 Ensembl716,781,368 - 16,798,274 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,519,591 - 16,521,093 (+)Ensembl
GRCm38.p6 Ensembl716,785,666 - 16,787,168 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,526,952 - 16,530,084 (+)Ensembl
GRCm38.p6 Ensembl716,793,027 - 16,796,159 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,518,663 - 16,527,631 (+)Ensembl
GRCm38.p6 Ensembl716,784,738 - 16,793,706 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,527,102 - 16,529,868 (+)Ensembl
GRCm38.p6 Ensembl716,793,177 - 16,795,943 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,520,296 - 16,527,721 (+)Ensembl
GRCm38.p6 Ensembl716,786,371 - 16,793,796 (+)Ensembl
Ensembl Acc Id: ENSMUST00000206444
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,516,323 - 16,521,104 (+)Ensembl
GRCm38.p6 Ensembl716,782,398 - 16,787,179 (+)Ensembl
RefSeq Acc Id: NM_009201   ⟹   NP_033227
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,515,271 - 16,532,199 (+)NCBI
GRCm38716,781,346 - 16,798,274 (+)NCBI
MGSCv37717,366,695 - 17,383,623 (+)RGD
Celera713,979,416 - 13,996,329 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539695   ⟹   XP_006539758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,515,259 - 16,532,168 (+)NCBI
GRCm38716,781,345 - 16,798,243 (+)NCBI
Sequence:
RefSeq Acc Id: XR_391052
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,515,259 - 16,532,177 (+)NCBI
GRCm38716,781,334 - 16,798,243 (+)NCBI
Sequence:
1 to 11 of 11 rows
Protein RefSeqs NP_033227 (Get FASTA)   NCBI Sequence Viewer  
  XP_006539758 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA66264 (Get FASTA)   NCBI Sequence Viewer  
  AAG02180 (Get FASTA)   NCBI Sequence Viewer  
  AAH29873 (Get FASTA)   NCBI Sequence Viewer  
  AAH37462 (Get FASTA)   NCBI Sequence Viewer  
  BAA12716 (Get FASTA)   NCBI Sequence Viewer  
  BAE28496 (Get FASTA)   NCBI Sequence Viewer  
  EDL42080 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000104136
GenBank Protein P51912 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_033227   ⟸   NM_009201
- UniProtKB: Q3UFR4 (UniProtKB/TrEMBL),   Q9ESU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539758   ⟸   XM_006539695
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000104136   ⟸   ENSMUST00000108496

Name Modeler Protein Id AA Range Protein Structure
AF-P51912-F1-model_v2 AlphaFold P51912 1-553 view protein structure

RGD ID:6891938
Promoter ID:EPDNEW_M9420
Type:multiple initiation site
Name:Slc1a5_1
Description:Mus musculus solute carrier family 1 , member 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38716,781,369 - 16,781,429EPDNEW
RGD ID:6842040
Promoter ID:MM_KWN:48922
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000065232,   NM_009201,   OTTMUST00000052917
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36717,365,706 - 17,367,737 (+)MPROMDB
RGD ID:6842041
Promoter ID:MM_KWN:48923
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung
Transcripts:OTTMUST00000052918
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36717,369,126 - 17,370,102 (+)MPROMDB
RGD ID:6842039
Promoter ID:MM_KWN:48924
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   ES_Cell
Transcripts:OTTMUST00000052919
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36717,370,021 - 17,371,062 (+)MPROMDB
RGD ID:6842045
Promoter ID:MM_KWN:48925
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Lung
Transcripts:OTTMUST00000052920
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36717,370,831 - 17,372,117 (+)MPROMDB
RGD ID:6842043
Promoter ID:MM_KWN:48926
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   Kidney,   Lung
Transcripts:OTTMUST00000052921,   OTTMUST00000052922
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36717,377,441 - 17,379,222 (+)MPROMDB


1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000001918 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000108496 ENTREZGENE
Gene3D-CATH 1.10.3860.10 UniProtKB/Swiss-Prot
InterPro DAACS UniProtKB/Swiss-Prot
  Na-dicarboxylate_symporter UniProtKB/Swiss-Prot
  Na-dicarboxylate_symporter_CS UniProtKB/Swiss-Prot
  Na:dicarbo_symporter_sf UniProtKB/Swiss-Prot
MGD MGI:105305 ENTREZGENE
NCBI Gene 20514 ENTREZGENE
PANTHER NEUTRAL AMINO ACID TRANSPORTER B(0) UniProtKB/Swiss-Prot
  SODIUM/DICARBOXYLATE SYMPORTER-RELATED UniProtKB/Swiss-Prot
Pfam SDF UniProtKB/Swiss-Prot
PhenoGen Slc1a5 PhenoGen
PRINTS EDTRNSPORT UniProtKB/Swiss-Prot
PROSITE NA_DICARBOXYL_SYMP_1 UniProtKB/Swiss-Prot
  NA_DICARBOXYL_SYMP_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF118215 UniProtKB/Swiss-Prot
UniProt AAAT_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UFR4 ENTREZGENE, UniProtKB/TrEMBL
  Q5U647_MOUSE UniProtKB/TrEMBL
  Q9ESU7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q61326 UniProtKB/Swiss-Prot
1 to 22 of 22 rows