Vmn1r85 (vomeronasal 1 receptor 85) - Rat Genome Database

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Gene: Vmn1r85 (vomeronasal 1 receptor 85) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r85
Name: vomeronasal 1 receptor 85
RGD ID: 1550828
MGI Page MGI
Description: INTERACTS WITH ozone
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC123524; MGC123525; V1r; V1rj3; vomernasal 1 receptor Vmn1r85; vomeronasal 1 receptor, J3; vomeronasal type 1 receptor J3
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,818,216 - 12,819,142 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,817,240 - 12,829,100 (-)EnsemblGRCm39 Ensembl
GRCm38713,084,289 - 13,085,215 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl713,083,313 - 13,095,173 (-)EnsemblGRCm38mm10GRCm38
MGSCv37713,669,638 - 13,670,564 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,984,468 - 11,985,394 (-)NCBIMGSCv36mm8
Celera710,711,374 - 10,712,300 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ozone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, etal., Nat Neurosci 2002 Feb;5(2):134-40.
Additional References at PubMed
PMID:12477932   PMID:16602821   PMID:19387439   PMID:19952141   PMID:20003482   PMID:21267068   PMID:21873635   PMID:36383665  


Genomics

Variants

.
Variants in Vmn1r85
26 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:53
Interacting mature miRNAs:55
Transcripts:ENSMUST00000094829
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse

Markers in Region
UniSTS:485053  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38713,084,289 - 13,085,215UniSTSGRCm38
MGSCv37713,669,638 - 13,670,564UniSTSGRCm37
Celera710,711,374 - 10,712,300UniSTS
Cytogenetic Map7A1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_145847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB062908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC121301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF454735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF783763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000094829   ⟹   ENSMUSP00000092424
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,818,216 - 12,819,142 (-)Ensembl
GRCm38.p6 Ensembl713,084,289 - 13,085,215 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209822   ⟹   ENSMUSP00000148178
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,817,240 - 12,829,100 (-)Ensembl
GRCm38.p6 Ensembl713,083,313 - 13,095,173 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235753   ⟹   ENSMUSP00000157899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,817,240 - 12,829,100 (-)Ensembl
GRCm38.p6 Ensembl713,083,313 - 13,095,173 (-)Ensembl
RefSeq Acc Id: NM_145847   ⟹   NP_665846
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39712,818,216 - 12,819,142 (-)NCBI
GRCm38713,084,289 - 13,085,215 (-)ENTREZGENE
MGSCv37713,669,638 - 13,670,564 (-)RGD
Celera710,711,374 - 10,712,300 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_665846 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI10464 (Get FASTA)   NCBI Sequence Viewer  
  AAI10465 (Get FASTA)   NCBI Sequence Viewer  
  AAM62403 (Get FASTA)   NCBI Sequence Viewer  
  AEF00848 (Get FASTA)   NCBI Sequence Viewer  
  AEF00849 (Get FASTA)   NCBI Sequence Viewer  
  AEF00850 (Get FASTA)   NCBI Sequence Viewer  
  AEF00851 (Get FASTA)   NCBI Sequence Viewer  
  AEF00852 (Get FASTA)   NCBI Sequence Viewer  
  AEF00853 (Get FASTA)   NCBI Sequence Viewer  
  AEF00854 (Get FASTA)   NCBI Sequence Viewer  
  AEF00855 (Get FASTA)   NCBI Sequence Viewer  
  AEF00856 (Get FASTA)   NCBI Sequence Viewer  
  AEF00857 (Get FASTA)   NCBI Sequence Viewer  
  AEF00858 (Get FASTA)   NCBI Sequence Viewer  
  AEF00859 (Get FASTA)   NCBI Sequence Viewer  
  AEF00860 (Get FASTA)   NCBI Sequence Viewer  
  AEF00861 (Get FASTA)   NCBI Sequence Viewer  
  AEF00862 (Get FASTA)   NCBI Sequence Viewer  
  AEF00863 (Get FASTA)   NCBI Sequence Viewer  
  AEF00864 (Get FASTA)   NCBI Sequence Viewer  
  AEF00865 (Get FASTA)   NCBI Sequence Viewer  
  AEF00866 (Get FASTA)   NCBI Sequence Viewer  
  AEF00867 (Get FASTA)   NCBI Sequence Viewer  
  AEF00868 (Get FASTA)   NCBI Sequence Viewer  
  AEF00869 (Get FASTA)   NCBI Sequence Viewer  
  AEF00870 (Get FASTA)   NCBI Sequence Viewer  
  AEF00871 (Get FASTA)   NCBI Sequence Viewer  
  AEF00872 (Get FASTA)   NCBI Sequence Viewer  
  AEF00873 (Get FASTA)   NCBI Sequence Viewer  
  AEF00874 (Get FASTA)   NCBI Sequence Viewer  
  BAB79225 (Get FASTA)   NCBI Sequence Viewer  
  EDL38069 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000092424
  ENSMUSP00000092424.2
  ENSMUSP00000148178.2
  ENSMUSP00000157899.2
Reference Protein Sequences
RefSeq Acc Id: NP_665846   ⟸   NM_145847
- UniProtKB: Q8VIB8 (UniProtKB/TrEMBL),   F6MD51 (UniProtKB/TrEMBL),   F6MD62 (UniProtKB/TrEMBL),   F6MD63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000092424   ⟸   ENSMUST00000094829
RefSeq Acc Id: ENSMUSP00000157899   ⟸   ENSMUST00000235753
RefSeq Acc Id: ENSMUSP00000148178   ⟸   ENSMUST00000209822
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VIB8-F1-model_v2 AlphaFold Q8VIB8 1-308 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2182262 AgrOrtholog
Ensembl Genes ENSMUSG00000070817 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000094829 ENTREZGENE
  ENSMUST00000094829.2 UniProtKB/TrEMBL
  ENSMUST00000209822.3 UniProtKB/TrEMBL
  ENSMUST00000235753.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:252909 UniProtKB/TrEMBL
MGD MGI:2182262 ENTREZGENE
NCBI Gene 252909 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r85 PhenoGen
PRINTS VOMERONASL1R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt F6MD51 ENTREZGENE
  F6MD62 ENTREZGENE
  F6MD63 ENTREZGENE
  Q8VIB8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r85  vomeronasal 1 receptor 85  V1rj3  vomeronasal 1 receptor, J3  Symbol and/or name change 5135510 APPROVED