Ankrd27 (ankyrin repeat domain 27 (VPS9 domain)) - Rat Genome Database

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Gene: Ankrd27 (ankyrin repeat domain 27 (VPS9 domain)) Mus musculus
Analyze
Symbol: Ankrd27
Name: ankyrin repeat domain 27 (VPS9 domain)
RGD ID: 1316103
MGI Page MGI
Description: Exhibits SNARE binding activity and small GTPase binding activity. Involved in endosome to melanosome transport; neuron projection morphogenesis; and positive regulation of dendrite morphogenesis. Localizes to melanosome; neuron projection; and transport vesicle. Is expressed in several structures, including genitourinary system; liver; lung; spleen; and stomach. Human ortholog(s) of this gene implicated in eosinophilic esophagitis. Orthologous to human ANKRD27 (ankyrin repeat domain 27); PARTICIPATES IN retromer-mediated pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA408090; ankyrin repeat domain-containing protein 27; BC016493; D330003H11Rik; mFLJ00040 protein; MGC25907; Varp; VPS9 domain-containing protein; VPS9-ankyrin repeat-containing protein; VPS9-ankyrin-repeat protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,285,652 - 35,338,662 (+)NCBIGRCm39mm39
GRCm39 Ensembl735,285,669 - 35,338,651 (+)Ensembl
GRCm38735,586,226 - 35,639,237 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,586,244 - 35,639,226 (+)EnsemblGRCm38mm10GRCm38
MGSCv37736,371,266 - 36,424,256 (+)NCBIGRCm37mm9NCBIm37
MGSCv36735,295,013 - 35,349,386 (+)NCBImm8
Celera730,714,999 - 30,784,611 (+)NCBICelera
Cytogenetic Map7B2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasmic vesicle  (IEA)
cytosol  (IBA)
early endosome  (IBA,ISO)
endosome  (IEA)
late endosome  (IBA,ISO)
lysosome  (ISO)
melanosome  (IDA)
membrane  (IEA)
neuron projection  (IBA,IDA)
plasma membrane  (IBA,ISO)
transport vesicle  (IBA,IDA)
tubular endosome  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:14621295   PMID:15449545   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16525121   PMID:17967808   PMID:18477474   PMID:18799693   PMID:19403694   PMID:19745841   PMID:21187289   PMID:21187829   PMID:21267068   PMID:21873635   PMID:22171327  
PMID:25661869   PMID:27066885   PMID:27626380   PMID:32325033  


Genomics

Comparative Map Data
Ankrd27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,285,652 - 35,338,662 (+)NCBIGRCm39mm39
GRCm39 Ensembl735,285,669 - 35,338,651 (+)Ensembl
GRCm38735,586,226 - 35,639,237 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,586,244 - 35,639,226 (+)EnsemblGRCm38mm10GRCm38
MGSCv37736,371,266 - 36,424,256 (+)NCBIGRCm37mm9NCBIm37
MGSCv36735,295,013 - 35,349,386 (+)NCBImm8
Celera730,714,999 - 30,784,611 (+)NCBICelera
Cytogenetic Map7B2NCBI
ANKRD27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1932,597,006 - 32,676,597 (-)EnsemblGRCh38hg38GRCh38
GRCh381932,597,005 - 32,675,215 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371933,087,912 - 33,166,086 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361937,779,747 - 37,857,942 (-)NCBINCBI36hg18NCBI36
Build 341937,779,753 - 37,857,919NCBI
Celera1929,781,556 - 29,859,734 (-)NCBI
Cytogenetic Map19q13.11NCBI
HuRef1929,590,946 - 29,669,349 (-)NCBIHuRef
CHM1_11933,088,999 - 33,167,383 (-)NCBICHM1_1
Ankrd27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2188,251,216 - 88,303,615 (+)NCBI
Rnor_6.0 Ensembl191,857,057 - 91,958,763 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0191,857,048 - 91,958,763 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0192,984,820 - 93,090,728 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4188,117,683 - 88,139,762 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1188,195,782 - 88,218,272 (+)NCBI
Celera182,601,058 - 82,651,370 (+)NCBICelera
Cytogenetic Map1q21NCBI
Ankrd27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554685,324,858 - 5,363,778 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554685,314,779 - 5,364,925 (+)NCBIChiLan1.0ChiLan1.0
ANKRD27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11938,264,485 - 38,342,604 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1938,264,485 - 38,342,604 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01929,516,853 - 29,594,519 (-)NCBIMhudiblu_PPA_v0panPan3
ANKRD27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,325,132 - 119,377,266 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,325,873 - 119,376,948 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,723,450 - 118,776,876 (+)NCBI
ROS_Cfam_1.01119,924,453 - 119,978,628 (+)NCBI
UMICH_Zoey_3.11119,487,737 - 119,541,456 (+)NCBI
UNSW_CanFamBas_1.01119,107,807 - 119,161,198 (+)NCBI
UU_Cfam_GSD_1.01120,167,782 - 120,221,482 (+)NCBI
Ankrd27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093498,548,186 - 8,601,489 (-)NCBI
SpeTri2.0NW_0049365703,044,565 - 3,097,692 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl642,501,165 - 42,559,912 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1642,501,167 - 42,559,926 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,010,248 - 38,169,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD27
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1627,645,474 - 27,724,829 (-)NCBI
ChlSab1.1 Ensembl627,644,597 - 27,724,819 (-)Ensembl
Ankrd27
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247947,494,275 - 7,544,671 (-)NCBI

Position Markers
Ankrd27  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B2UniSTS
cM Map7 UniSTS
RH124667  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,639,038 - 35,639,141UniSTSGRCm38
MGSCv37736,424,057 - 36,424,160UniSTSGRCm37
Cytogenetic Map7B2UniSTS
UniSTS:235649  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38735,608,758 - 35,609,065UniSTSGRCm38
MGSCv37736,393,777 - 36,394,084UniSTSGRCm37
Celera730,737,426 - 30,737,733UniSTS
Cytogenetic Map7B2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7269777136697919Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined71028944244289559Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71060637344606511Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71278145246781452Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71278145246781452Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1333306047333196Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71343577947435779Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71360000047700000Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71690336849509583Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71899486940024609Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718994869119886157Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71958059053580679Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined72014282554142942Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72302446357024609Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72323914857239292Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72341710757417107Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72719819161202351Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72760637337142942Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72789112561891125Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3033306081485905Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730500000109400000Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73206509766065329Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73274478466744933Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3379830258499217Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3379830258499217Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3379830258499217Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3379830258499217Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73379830258499217Mouse
1357731Lvrq6_mliver weight QTL 6 (mouse)Not determined73379830258499217Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73379830258499217Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73379830258499217Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73379830258499217Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73440327768403475Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73450000051500000Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73466713968667295Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73479812168798270Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:353
Count of miRNA genes:259
Interacting mature miRNAs:300
Transcripts:ENSMUST00000040844
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB455262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC151531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI429389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY336500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY070464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY376293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000040844   ⟹   ENSMUSP00000041751
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,586,244 - 35,639,226 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186245   ⟹   ENSMUSP00000140554
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,586,250 - 35,609,114 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,612,150 - 35,615,044 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187807   ⟹   ENSMUSP00000140848
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,615,948 - 35,628,449 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188906   ⟹   ENSMUSP00000139753
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,586,250 - 35,601,643 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190503   ⟹   ENSMUSP00000140259
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,586,277 - 35,639,226 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205801
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,601,426 - 35,604,355 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206157   ⟹   ENSMUSP00000145969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,586,275 - 35,603,885 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206472   ⟹   ENSMUSP00000146118
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,586,255 - 35,634,619 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206632   ⟹   ENSMUSP00000145817
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl735,619,479 - 35,627,544 (+)Ensembl
RefSeq Acc Id: NM_001358876   ⟹   NP_001345805
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,285,672 - 35,338,662 (+)NCBI
GRCm38735,586,247 - 35,639,237 (+)NCBI
Sequence:
RefSeq Acc Id: NM_145633   ⟹   NP_663608
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,285,672 - 35,338,662 (+)NCBI
GRCm38735,586,247 - 35,639,237 (+)NCBI
MGSCv37736,371,266 - 36,424,256 (+)RGD
Celera730,714,999 - 30,784,611 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_178263   ⟹   NP_839994
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,285,672 - 35,308,539 (+)NCBI
GRCm38735,586,247 - 35,609,114 (+)NCBI
MGSCv37736,371,266 - 36,424,256 (+)RGD
Celera730,714,999 - 30,784,611 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_152519
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,285,672 - 35,338,662 (+)NCBI
GRCm38735,586,247 - 35,639,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006539986   ⟹   XP_006540049
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,285,652 - 35,338,651 (+)NCBI
GRCm38735,586,227 - 35,639,226 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242590   ⟹   XP_030098450
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39735,285,653 - 35,338,651 (+)NCBI
GRCm38735,586,227 - 35,639,226 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_663608   ⟸   NM_145633
- Peptide Label: isoform 1
- UniProtKB: Q3UMR0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_839994   ⟸   NM_178263
- Peptide Label: isoform 2
- UniProtKB: Q3UMR0 (UniProtKB/Swiss-Prot),   A0A0R4J2C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006540049   ⟸   XM_006539986
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030098450   ⟸   XM_030242590
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001345805   ⟸   NM_001358876
- Peptide Label: isoform 3
RefSeq Acc Id: ENSMUSP00000145969   ⟸   ENSMUST00000206157
RefSeq Acc Id: ENSMUSP00000140554   ⟸   ENSMUST00000186245
RefSeq Acc Id: ENSMUSP00000145817   ⟸   ENSMUST00000206632
RefSeq Acc Id: ENSMUSP00000041751   ⟸   ENSMUST00000040844
RefSeq Acc Id: ENSMUSP00000146118   ⟸   ENSMUST00000206472
RefSeq Acc Id: ENSMUSP00000140259   ⟸   ENSMUST00000190503
RefSeq Acc Id: ENSMUSP00000139753   ⟸   ENSMUST00000188906
RefSeq Acc Id: ENSMUSP00000140848   ⟸   ENSMUST00000187807
Protein Domains
ANK_REP_REGION   VPS9

Promoters
RGD ID:8663671
Promoter ID:EPDNEW_M9867
Type:initiation region
Name:Ankrd27_1
Description:Mus musculus ankyrin repeat domain 27 , transcript variant 4,non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38735,586,250 - 35,586,310EPDNEW
RGD ID:6840597
Promoter ID:MM_KWN:50036
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000085536,   ENSMUST00000085538,   NM_145633,   NM_178263
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36736,370,891 - 36,371,391 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444103 AgrOrtholog
Ensembl Genes ENSMUSG00000034867 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000041751 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000139753 UniProtKB/TrEMBL
  ENSMUSP00000140259 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140554 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000140848 UniProtKB/TrEMBL
  ENSMUSP00000145817 UniProtKB/TrEMBL
  ENSMUSP00000145969 UniProtKB/TrEMBL
  ENSMUSP00000146118 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000040844 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000186245 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000187807 UniProtKB/TrEMBL
  ENSMUST00000188906 UniProtKB/TrEMBL
  ENSMUST00000190503 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000206157 UniProtKB/TrEMBL
  ENSMUST00000206472 UniProtKB/TrEMBL
  ENSMUST00000206632 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1050.80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:245886 UniProtKB/Swiss-Prot
MGD MGI:2444103 ENTREZGENE
NCBI Gene 245886 ENTREZGENE
Pfam Ank UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ankrd27 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109993 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WPF2_MOUSE UniProtKB/TrEMBL
  A0A087WS06_MOUSE UniProtKB/TrEMBL
  A0A0R4J2C4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RP40_MOUSE UniProtKB/TrEMBL
  A0A0U1RPG1_MOUSE UniProtKB/TrEMBL
  A0A0U1RPT7_MOUSE UniProtKB/TrEMBL
  ANR27_MOUSE UniProtKB/Swiss-Prot
  C4TGC3_MOUSE UniProtKB/TrEMBL
  Q3UMR0 ENTREZGENE
UniProt Secondary Q6KAU0 UniProtKB/Swiss-Prot
  Q6P1F9 UniProtKB/Swiss-Prot
  Q7TNY8 UniProtKB/Swiss-Prot
  Q8BUD2 UniProtKB/Swiss-Prot
  Q91W65 UniProtKB/Swiss-Prot