Gm10648 (predicted gene 10648) - Rat Genome Database

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Gene: Gm10648 (predicted gene 10648) Mus musculus
Analyze
Symbol: Gm10648
Name: predicted gene 10648
RGD ID: 1624826
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: ENSMUSG00000074233; Gm44701
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,569,970 - 28,575,759 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,559,012 - 28,575,756 (-)EnsemblGRCm39 Ensembl
GRCm38728,870,545 - 28,876,334 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,859,587 - 28,876,331 (-)EnsemblGRCm38mm10GRCm38
MGSCv37729,644,606 - 29,661,350 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera723,420,521 - 23,437,265 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18799693  


Genomics

Variants

.
Variants in Gm10648
135 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000207552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl728,559,012 - 28,575,756 (-)Ensembl
GRCm38.p6 Ensembl728,859,587 - 28,876,331 (-)Ensembl
RefSeq Acc Id: XR_881920
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39728,569,970 - 28,575,759 (-)NCBI
GRCm38728,870,545 - 28,876,334 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAE34325 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000108930 Ensembl
MGD MGI:3642037 ENTREZGENE
NCBI Gene 100038382 ENTREZGENE
PhenoGen Gm10648 PhenoGen
UniProt Q3TZ85_MOUSE UniProtKB/TrEMBL