Obox3-ps2 (oocyte specific homeobox 3, pseudogene 2) - Rat Genome Database

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Gene: Obox3-ps2 (oocyte specific homeobox 3, pseudogene 2) Mus musculus
Analyze
Symbol: Obox3-ps2
Name: oocyte specific homeobox 3, pseudogene 2
RGD ID: 1617752
MGI Page MGI
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG666312; Gm8040
Related Functional Gene: Obox3  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39714,533,719 - 14,544,775 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl714,534,149 - 14,535,751 (-)EnsemblGRCm39 Ensembl
GRCm38714,799,794 - 14,810,850 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl714,800,224 - 14,801,826 (-)EnsemblGRCm38mm10GRCm38
MGSCv37715,385,143 - 15,396,199 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36713,699,974 - 13,711,253 (-)NCBIMGSCv36mm8
Cytogenetic Map7A1NCBI
cM Map78.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Obox3-ps2
369 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:125
Interacting mature miRNAs:126
Transcripts:ENSMUST00000177243
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_016839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC166932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000177243
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl714,534,149 - 14,535,751 (-)Ensembl
GRCm38.p6 Ensembl714,800,224 - 14,801,826 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000093584 Ensembl
MGD MGI:3647077 ENTREZGENE
NCBI Gene 666312 ENTREZGENE
PhenoGen Obox3-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-19 Obox3-ps2  oocyte specific homeobox 3, pseudogene 2  Gm8040  predicted gene 8040  Symbol and/or name change 5135510 APPROVED