Gm4880 (predicted pseudogene 4880) - Rat Genome Database

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Gene: Gm4880 (predicted pseudogene 4880) Mus musculus
Analyze
Symbol: Gm4880
Name: predicted pseudogene 4880
RGD ID: 1622071
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG232930
Related Functional Gene: Mtmr2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,242,835 - 18,245,664 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,243,786 - 18,245,555 (-)EnsemblGRCm39 Ensembl
GRCm38718,508,910 - 18,511,739 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl718,509,861 - 18,511,630 (-)EnsemblGRCm38mm10GRCm38
MGSCv37719,094,259 - 19,097,088 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36717,668,636 - 17,670,153 (-)NCBIMGSCv36mm8
Celera715,920,884 - 15,923,713 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm4880
94 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse

Markers in Region
RH129379  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38718,374,388 - 18,374,544UniSTSGRCm38
GRCm38718,508,937 - 18,509,093UniSTSGRCm38
MGSCv37718,959,737 - 18,959,893UniSTSGRCm37
MGSCv37719,094,286 - 19,094,442UniSTSGRCm37
Celera715,920,911 - 15,921,067UniSTS
Cytogenetic Map7A2UniSTS
RH129424  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38718,374,385 - 18,374,536UniSTSGRCm38
GRCm38718,508,934 - 18,509,085UniSTSGRCm38
MGSCv37718,959,734 - 18,959,885UniSTSGRCm37
MGSCv37719,094,283 - 19,094,434UniSTSGRCm37
Celera715,920,908 - 15,921,059UniSTS
Cytogenetic Map7A2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_008268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC151412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000207645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl718,243,786 - 18,245,555 (-)Ensembl
GRCm38.p6 Ensembl718,509,861 - 18,511,630 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000109355 Ensembl
MGD MGI:3648786 ENTREZGENE
NCBI Gene 232930 ENTREZGENE
PhenoGen Gm4880 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm4880  predicted pseudogene 4880  Gm4880  predicted gene 4880  Symbol and/or name change 5135510 APPROVED