Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 3-methylglutaconic aciduria type 9 | | ISO | TIMM50 (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 3-methylglutaconic aciduria type 9 | | ISO | TIMM50 (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
4. | Unlocking the presequence import pathway. | Schulz C, etal., Trends Cell Biol. 2015 May;25(5):265-75. doi: 10.1016/j.tcb.2014.12.001. Epub 2014 Dec 23. |
5. | Cooperation of protein machineries in mitochondrial protein sorting. | Wenz LS, etal., Biochim Biophys Acta. 2015 May;1853(5):1119-29. doi: 10.1016/j.bbamcr.2015.01.012. Epub 2015 Jan 26. |
PMID:8889548 | PMID:10349636 | PMID:10725249 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12466851 | PMID:12477932 | PMID:12520002 | PMID:14610273 | PMID:15044455 |
PMID:15489334 | PMID:15782199 | PMID:16141072 | PMID:16141073 | PMID:18614015 | PMID:18799693 | PMID:21267068 | PMID:21677750 | PMID:21725061 | PMID:21873635 | PMID:24457600 | PMID:27626380 |
PMID:28378742 | PMID:28432072 | PMID:29518331 | PMID:30457570 | PMID:30550785 | PMID:32554809 | PMID:33601422 | PMID:34321999 | PMID:36114006 | PMID:36417873 |
Timm50 (Mus musculus - house mouse) |
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TIMM50 (Homo sapiens - human) |
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Timm50 (Rattus norvegicus - Norway rat) |
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Timm50 (Chinchilla lanigera - long-tailed chinchilla) |
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TIMM50 (Pan paniscus - bonobo/pygmy chimpanzee) |
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TIMM50 (Canis lupus familiaris - dog) |
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Timm50 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TIMM50 (Sus scrofa - pig) |
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TIMM50 (Chlorocebus sabaeus - green monkey) |
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Timm50 (Heterocephalus glaber - naked mole-rat) |
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Variants in Timm50
324 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AU015082 |
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RefSeq Transcripts | NM_025616 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NR_183621 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC002327 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC148986 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK008340 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK008382 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK010832 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK012977 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK088074 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK167473 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK178698 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK179970 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK186056 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK186280 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK187841 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK199954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK211593 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK212208 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK213347 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK219400 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY551342 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC010303 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC025844 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC037056 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466593 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000081946 ⟹ ENSMUSP00000080614 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000131849 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000134263 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000135220 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000136427 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000151990 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_025616 ⟹ NP_079892 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_183621 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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Protein RefSeqs | NP_079892 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAH10303 | (Get FASTA) | NCBI Sequence Viewer |
AAH25844 | (Get FASTA) | NCBI Sequence Viewer | |
AAT01209 | (Get FASTA) | NCBI Sequence Viewer | |
BAB25615 | (Get FASTA) | NCBI Sequence Viewer | |
BAC25384 | (Get FASTA) | NCBI Sequence Viewer | |
BAE39556 | (Get FASTA) | NCBI Sequence Viewer | |
EDL24146 | (Get FASTA) | NCBI Sequence Viewer | |
EDL24147 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000080614 | ||
ENSMUSP00000080614.5 | |||
GenBank Protein | Q9D880 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_079892 ⟸ NM_025616 |
- Peptide Label: | precursor |
- UniProtKB: | Q8R3A7 (UniProtKB/Swiss-Prot), Q91Z17 (UniProtKB/Swiss-Prot), Q9D880 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000080614 ⟸ ENSMUST00000081946 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9D880-F1-model_v2 | AlphaFold | Q9D880 | 1-353 | view protein structure |
RGD ID: | 6892442 | ||||||||
Promoter ID: | EPDNEW_M9672 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Timm50_1 | ||||||||
Description: | Mus musculus translocase of inner mitochondrial membrane 50 ,mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6840565 | ||||||||
Promoter ID: | MM_KWN:49629 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Brain, Kidney | ||||||||
Transcripts: | OTTMUST00000073248, UC009FYF.1 | ||||||||
Position: |
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RGD ID: | 6842185 | ||||||||
Promoter ID: | MM_KWN:49631 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000098629, OTTMUST00000073243, OTTMUST00000073244, OTTMUST00000073245, OTTMUST00000073246 | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1913775 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000003438 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
Ensembl Transcript | ENSMUST00000081946 | ENTREZGENE |
ENSMUST00000081946.5 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 3.40.50.1000 | UniProtKB/Swiss-Prot |
InterPro | FCP1_dom | UniProtKB/Swiss-Prot |
HAD-like_sf | UniProtKB/Swiss-Prot | |
HAD_sf | UniProtKB/Swiss-Prot | |
KEGG Report | mmu:66525 | UniProtKB/Swiss-Prot |
MGD | MGI:1913775 | ENTREZGENE |
NCBI Gene | 66525 | ENTREZGENE |
PANTHER | DULLARD PROTEIN PHOSPHATASE | UniProtKB/Swiss-Prot |
PTHR12210:SF3 | UniProtKB/Swiss-Prot | |
Pfam | NIF | UniProtKB/Swiss-Prot |
PhenoGen | Timm50 | PhenoGen |
PROSITE | FCP1 | UniProtKB/Swiss-Prot |
SMART | CPDc | UniProtKB/Swiss-Prot |
Superfamily-SCOP | SSF56784 | UniProtKB/Swiss-Prot |
UniProt | Q8BT83_MOUSE | UniProtKB/TrEMBL |
Q8R3A7 | ENTREZGENE | |
Q91Z17 | ENTREZGENE | |
Q9D880 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | Q8R3A7 | UniProtKB/Swiss-Prot |
Q91Z17 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2012-11-20 | Timm50 | translocase of inner mitochondrial membrane 50 | translocase of inner mitochondrial membrane 50 homolog (yeast) | Symbol and/or name change | 5135510 | APPROVED |