Ceacam13 (CEA cell adhesion molecule 13) - Rat Genome Database

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Gene: Ceacam13 (CEA cell adhesion molecule 13) Mus musculus
Analyze
No known orthologs.
Symbol: Ceacam13
Name: CEA cell adhesion molecule 13
RGD ID: 1617521
MGI Page MGI
Description: Predicted to be involved in T cell activation. Predicted to be located in apical plasma membrane and cytosol. Predicted to be active in external side of plasma membrane. Orthologous to human CEACAM7 (CEA cell adhesion molecule 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1600012K03Rik; 1600025J19Rik; carcinoembryonic antigen-related cell adhesion molecule 13; CEA-related cell adhesion molecule 13; Ceacam13-; Ceacam13-C1; Ceacam13-C2; MGC117613
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39717,743,814 - 17,753,145 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl717,743,814 - 17,753,146 (+)EnsemblGRCm39 Ensembl
GRCm38718,009,889 - 18,019,220 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl718,009,889 - 18,019,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv37718,595,238 - 18,604,569 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36717,168,411 - 17,177,742 (+)NCBIMGSCv36mm8
Celera715,444,325 - 15,453,627 (+)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16139472   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

Variants

.
Variants in Ceacam13
320 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:142
Interacting mature miRNAs:148
Transcripts:ENSMUST00000081703, ENSMUST00000108488
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000081703   ⟹   ENSMUSP00000080404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl717,743,814 - 17,747,413 (+)Ensembl
GRCm38.p6 Ensembl718,009,889 - 18,013,488 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108488   ⟹   ENSMUSP00000104128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl717,743,814 - 17,753,146 (+)Ensembl
GRCm38.p6 Ensembl718,009,889 - 18,019,221 (+)Ensembl
RefSeq Acc Id: NM_027210   ⟹   NP_081486
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39717,743,814 - 17,753,145 (+)NCBI
GRCm38718,009,889 - 18,019,220 (+)ENTREZGENE
MGSCv37718,595,238 - 18,604,569 (+)RGD
Celera715,444,325 - 15,453,627 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028171   ⟹   NP_082447
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39717,743,814 - 17,747,413 (+)NCBI
GRCm38718,009,889 - 18,013,488 (+)NCBI
MGSCv37718,595,238 - 18,604,569 (+)RGD
Celera715,444,325 - 15,453,627 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_082447   ⟸   NM_028171
- Peptide Label: isoform 2
- UniProtKB: Q9DAT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_081486   ⟸   NM_027210
- Peptide Label: isoform 1
- UniProtKB: Q9DAY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000104128   ⟸   ENSMUST00000108488
RefSeq Acc Id: ENSMUSP00000080404   ⟸   ENSMUST00000081703
Protein Domains
Immunoglobulin V-set

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DAT7-F1-model_v2 AlphaFold Q9DAT7 1-263 view protein structure

Promoters
RGD ID:6891980
Promoter ID:EPDNEW_M9441
Type:multiple initiation site
Name:Ceacam13_1
Description:Mus musculus carcinoembryonic antigen-related cell adhesion molecule13 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38718,009,889 - 18,009,949EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917035 AgrOrtholog
Ensembl Genes ENSMUSG00000057195 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000081703 ENTREZGENE
  ENSMUST00000081703.8 UniProtKB/TrEMBL
  ENSMUST00000108488 ENTREZGENE
  ENSMUST00000108488.7 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
KEGG Report mmu:69785 UniProtKB/TrEMBL
MGD MGI:1917035 ENTREZGENE
NCBI Gene 69785 ENTREZGENE
PANTHER CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 11-RELATED UniProtKB/TrEMBL
  SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Ceacam13 PhenoGen
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt Q9DAT7 ENTREZGENE, UniProtKB/TrEMBL
  Q9DAY4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-14 Ceacam13  CEA cell adhesion molecule 13  Ceacam13  carcinoembryonic antigen-related cell adhesion molecule 13  Symbol and/or name change 5135510 APPROVED