Hamp (hepcidin antimicrobial peptide) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hamp (hepcidin antimicrobial peptide) Mus musculus
Analyze
Symbol: Hamp
Name: hepcidin antimicrobial peptide
RGD ID: 1550218
MGI Page MGI
Description: Enables copper ion binding activity. Involved in intracellular iron ion homeostasis and negative regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including defense response to other organism; multicellular organismal-level iron ion homeostasis; and positive regulation of macromolecule metabolic process. Located in extracellular space and nucleus. Is expressed in embryo; liver; and yolk sac. Used to study hemochromatosis type 2B. Human ortholog(s) of this gene implicated in anemia; hemochromatosis; hemochromatosis type 2B; and hepatocellular carcinoma. Orthologous to human HAMP (hepcidin antimicrobial peptide).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Hamp1; Hep; Hepc; Hepc1; hepcidin; hepcidin antimicrobial peptide 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,641,793 - 30,643,454 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,641,793 - 30,643,457 (-)EnsemblGRCm39 Ensembl
GRCm38730,942,368 - 30,944,029 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,942,368 - 30,944,032 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,727,387 - 31,729,036 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,651,128 - 30,652,777 (-)NCBIMGSCv36mm8
Celera725,508,433 - 25,510,082 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 37 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HampMouseanemia treatmentISOHAMP (Homo sapiens)11041612associated with Multiple MyelomaRGD 
HampMouseanemia  ISOHamp (Rattus norvegicus)11041773mRNA:increased expression:liverRGD 
HampMouseanemia  IMP 11041614associated with InflammationRGD 
HampMouseanemia treatmentISOHamp (Rattus norvegicus)11041619associated with InflammationRGD 
HampMouseanemia treatmentISOHamp (Rattus norvegicus)11041618associated with InflammationRGD 
HampMouseanemia  ISOHAMP (Homo sapiens)11041620associated with Malaria and FalciparumRGD 
HampMouseatransferrinemia treatmentIEP 11041615 RGD 
HampMousebeta thalassemia treatmentIEP 11041616 RGD 
HampMousebeta thalassemia  ISOHAMP (Homo sapiens)11041617 RGD 
HampMouseCardiomegaly  ISOHamp (Rattus norvegicus)11041632 RGD 
HampMouseChemical and Drug Induced Liver Injury  ISOHamp (Rattus norvegicus)11041724mRNA:increased expression:hepatocyteRGD 
HampMousecongestive heart failure  ISOHAMP (Homo sapiens)11041621protein:increased expression:serum and urineRGD 
HampMouseend stage renal disease  ISOHAMP (Homo sapiens)11041622protein:increased expression:plasmaRGD 
HampMouseend stage renal disease  ISOHamp (Rattus norvegicus)11041611mRNA:increased expression:liverRGD 
HampMouseExperimental Autoimmune Myocarditis  ISOHamp (Rattus norvegicus)11041636mRNA:increased expression:heartRGD 
HampMouseExperimental Colitis  ISOHamp (Rattus norvegicus)11041628protein:increased expression:colonRGD 
HampMouseextrahepatic cholestasis  ISOHamp (Rattus norvegicus)11041639mRNA:decreased expression:liverRGD 
HampMouseHelicobacter Infections treatmentISOHAMP (Homo sapiens)11041721 RGD 
HampMousehemochromatosis  ISOHAMP (Homo sapiens)1599358juvenile hereditary hemochromatosis more ...RGD 
HampMousehepatocellular carcinoma  IDA 15042879DNA:hypermethylation and hypomethylation:promoterRGD 
1 to 20 of 37 rows
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HampMouseBrugada syndrome 5  ISOHAMP (Homo sapiens)8554872ClinVar Annotator: match by term: Brugada syndrome 5ClinVarPMID:28492532
HampMousedystonia  ISOHAMP (Homo sapiens)8554872ClinVar Annotator: match by term: Dystonic disorderClinVarPMID:32581362
HampMousegenetic disease  ISOHAMP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
HampMousehemochromatosis  ISOHAMP (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12915468 more ...
HampMousehemochromatosis type 1  ISOHAMP (Homo sapiens)8554872ClinVar Annotator: match by term: Hemochromatosis type 1ClinVarPMID:12915468 more ...
HampMousehemochromatosis type 2  ISOHAMP (Homo sapiens)8554872ClinVar Annotator: match by term: Juvenile hemochromatosisClinVar 
HampMousehemochromatosis type 2A  ISOHAMP (Homo sapiens)8554872ClinVar Annotator: match by term: Hemochromatosis more ...ClinVarPMID:12915468 more ...
HampMousehemochromatosis type 2B  ISOHAMP (Homo sapiens)8554872ClinVar Annotator: match by term: Hemochromatosis type 2BClinVarPMID:12469120 more ...
HampMousehereditary spastic paraplegia 75  ISOHAMP (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 75ClinVarPMID:28492532
1 to 9 of 9 rows
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HampMouseanemia  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16434484 more ...
HampMousebeta thalassemia  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16755567
HampMousebiliary atresia  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16627878
HampMousediastolic heart failure  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29556499
HampMouseend stage renal disease  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16929540
HampMousehemochromatosis  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16574947 more ...
HampMousehemochromatosis type 2B  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
HampMousehepatocellular carcinoma  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28284560
HampMouseIron Overload  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20801540 and PMID:22659129
HampMouseKidney Neoplasms  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28321044
HampMouseWilson disease  ISOHAMP (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23519153
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HampMousehemochromatosis type 2B  IAGP 13592920OMIM:613313MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HampMousehemochromatosis type 2B  ISOHAMP (Homo sapiens)7240710 OMIM 

1 to 20 of 298 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HampMouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of HAMP mRNACTDPMID:36331819
HampMouse1,10-phenanthroline decreases expressionISOHAMP (Homo sapiens)64804641 and 10-phenanthroline results in decreased expression of HAMP mRNACTDPMID:25633564
HampMouse10-(beta-Dimethylaminopropionyl)phenothiazine decreases expressionISOHAMP (Homo sapiens)648046410-(alpha-diethylaminopropionyl)phenothiazine results in decreased expression of HAMP mRNACTDPMID:25633564
HampMouse17beta-estradiol multiple interactionsISOHAMP (Homo sapiens)6480464Tamoxifen inhibits the reaction [Estradiol results in decreased expression of HAMP mRNA]CTDPMID:25686467
HampMouse17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of HAMP mRNACTDPMID:39298647
HampMouse17beta-estradiol decreases expressionISOHamp (Rattus norvegicus)6480464Estradiol results in decreased expression of HAMP mRNACTDPMID:32145629
HampMouse17beta-estradiol decreases expressionISOHAMP (Homo sapiens)6480464Estradiol results in decreased expression of HAMP mRNACTDPMID:20106945 and PMID:25686467
HampMouse2,2',4,4',5,5'-hexachlorobiphenyl decreases expressionISOHAMP (Homo sapiens)64804642 more ...CTDPMID:25686467
HampMouse2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOHAMP (Homo sapiens)64804642 more ...CTDPMID:23146750
HampMouse2,2'-bipyridine decreases expressionISOHAMP (Homo sapiens)64804642 and 2'-Dipyridyl results in decreased expression of HAMP mRNACTDPMID:19924283
HampMouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to HAMP promoter]CTDPMID:19654925
HampMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOHamp (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of HAMP mRNACTDPMID:32109520
HampMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of HAMP mRNACTDPMID:28213091
HampMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of HAMP mRNACTDPMID:26377647
HampMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOHAMP (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of HAMP mRNACTDPMID:20106945 more ...
HampMouse2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:28213091
HampMouse2,4-D multiple interactionsEXP 6480464[lard co-treated with Cholesterol more ...CTDPMID:37567420
HampMouse2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionEXP 64804642 more ...CTDPMID:38648751
HampMouse2,6-dinitrotoluene affects expressionISOHamp (Rattus norvegicus)64804642 and 6-dinitrotoluene affects the expression of HAMP mRNACTDPMID:21346803
HampMouse2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile multiple interactionsEXP 6480464Verapamil promotes the reaction [Iron-Dextran Complex results in increased expression of HAMP mRNA]CTDPMID:27095094

1 to 20 of 298 rows

Biological Process
1 to 20 of 60 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HampMouseacute-phase response  ISOHamp (Rattus norvegicus)9068941 RGDPMID:22469696 and REF_RGD_ID:8694421
HampMouseantimicrobial humoral immune response mediated by antimicrobial peptide involved_inISOUniProtKB:P811722290270 GO_CentralGO_REF:0000119
HampMousecell surface receptor signaling pathway via JAK-STAT acts_upstream_of_or_withinIDA 2290270 PMID:20530874MGIPMID:20530874
HampMousecellular response to bile acid  ISOHamp (Rattus norvegicus)9068941 RGDPMID:19652645 and REF_RGD_ID:11041639
HampMousecellular response to interleukin-6  ISOHamp (Rattus norvegicus)9068941 RGDPMID:23506423 and REF_RGD_ID:11041627
HampMousecellular response to lipopolysaccharide  ISOHamp (Rattus norvegicus)9068941 RGDPMID:23506423 and REF_RGD_ID:11041627
HampMousecellular response to tumor necrosis factor  ISOHamp (Rattus norvegicus)9068941 RGDPMID:23506423 and REF_RGD_ID:11041627
HampMousecellular response to X-ray  ISOHamp (Rattus norvegicus)9068941 RGDPMID:17090718 and REF_RGD_ID:11041722
HampMousedefense response to bacterium involved_inIBAPANTHER:PTN000424005 more ...2290270 GO_CentralGO_REF:0000033
HampMousedefense response to bacterium acts_upstream_of_or_withinIMPMGI:37010822290270 PMID:23390527MGIPMID:23390527
HampMousedefense response to bacterium acts_upstream_of_or_withinIDA 2290270 PMID:11113131MGIPMID:11113131
HampMousedefense response to fungus involved_inISOUniProtKB:P811722290270 GO_CentralGO_REF:0000119
HampMousedefense response to fungus acts_upstream_of_or_withinIDA 2290270 PMID:2995362MGIPMID:2995362
HampMousedefense response to Gram-negative bacterium involved_inISOUniProtKB:P811722290270 GO_CentralGO_REF:0000119
HampMousedefense response to Gram-positive bacterium involved_inISOUniProtKB:P811722290270 GO_CentralGO_REF:0000119
HampMouseestablishment of localization in cell acts_upstream_ofIGIMGI:13152042290270 PMID:21700773MGIPMID:21700773
HampMouseinflammatory response acts_upstream_ofIGIMGI:12017912290270 PMID:20530874MGIPMID:20530874
HampMouseintracellular iron ion homeostasis involved_inIDA 2290270 PMID:11447267UniProtPMID:11447267
HampMouseintracellular iron ion homeostasis involved_inISOHamp (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
HampMouseintracellular iron ion homeostasis involved_inISOUniProtKB:P811722290270 GO_CentralGO_REF:0000119
1 to 20 of 60 rows

Cellular Component
1 to 11 of 11 rows

  
1 to 11 of 11 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HampMousecopper ion binding enablesIDA 2290270 PMID:20113314MGIPMID:20113314
HampMousehormone activity enablesISOUniProtKB:P811722290270 GO_CentralGO_REF:0000119
HampMousehormone activity enablesIEAUniProtKB:P81172 and ensembl:ENSP000002223042290270 EnsemblGO_REF:0000107
HampMouseiron ion transmembrane transporter inhibitor activity enablesISOUniProtKB:P811722290270 GO_CentralGO_REF:0000119
HampMousesignaling receptor binding enablesISOUniProtKB:P811722290270 GO_CentralGO_REF:0000119
HampMousetransporter regulator activity enablesIEAUniProtKB:P81172 and ensembl:ENSP000002223042290270 EnsemblGO_REF:0000107

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HampMouseiron efflux pathway  ISOHAMP (Homo sapiens)11534369 RGD 

1 to 20 of 41 rows
#
Reference Title
Reference Citation
1. Association of hepcidin promoter c.-582 A>G variant and iron overload in thalassemia major. Andreani M, etal., Haematologica. 2009 Sep;94(9):1293-6. doi: 10.3324/haematol.2009.006270.
2. Vitamin A deficiency increases hepcidin expression and oxidative stress in rat. Arruda SF, etal., Nutrition. 2009 Apr;25(4):472-8. doi: 10.1016/j.nut.2008.11.030. Epub 2009 Feb 12.
3. Plasma hepcidin levels are elevated but responsive to erythropoietin therapy in renal disease. Ashby DR, etal., Kidney Int. 2009 May;75(9):976-81. doi: 10.1038/ki.2009.21. Epub 2009 Feb 11.
4. Transferrin is a major determinant of hepcidin expression in hypotransferrinemic mice. Bartnikas TB, etal., Blood. 2011 Jan 13;117(2):630-7. doi: 10.1182/blood-2010-05-287359. Epub 2010 Oct 18.
5. Changes in serum hepcidin levels in acute iron intoxication in a rat model. Ben-Assa E, etal., Toxicol Lett. 2009 Sep 28;189(3):242-7. doi: 10.1016/j.toxlet.2009.06.848. Epub 2009 Jun 12.
6. Suppressed hepcidin expression correlates with hypotransferrinemia in copper-deficient rat pups but not dams. Broderius M, etal., Genes Nutr. 2012 Jul;7(3):405-14. doi: 10.1007/s12263-012-0293-7. Epub 2012 Mar 29.
7. Hepcidin demonstrates a biphasic association with anemia in acute Plasmodium falciparum malaria. Casals-Pascual C, etal., Haematologica. 2012 Nov;97(11):1695-8. doi: 10.3324/haematol.2012.065854. Epub 2012 Jun 11.
8. Hepcidin is involved in iron regulation in the ischemic brain. Ding H, etal., PLoS One. 2011;6(9):e25324. doi: 10.1371/journal.pone.0025324. Epub 2011 Sep 21.
9. Hepcidin in anemia of chronic heart failure. Divakaran V, etal., Am J Hematol. 2011 Jan;86(1):107-9. doi: 10.1002/ajh.21902.
10. Ironing out Ferroportin. Drakesmith H, etal., Cell Metab. 2015 Nov 3;22(5):777-87. doi: 10.1016/j.cmet.2015.09.006. Epub 2015 Oct 1.
11. Iron as the key modulator of hepcidin expression in erythroid antibody-mediated hypoplasia. Fernandes JC, etal., Biomed Res Int. 2014;2014:421304. doi: 10.1155/2014/421304. Epub 2014 Dec 18.
12. Ineffective erythropoiesis in beta-thalassemia is characterized by increased iron absorption mediated by down-regulation of hepcidin and up-regulation of ferroportin. Gardenghi S, etal., Blood. 2007 Jun 1;109(11):5027-35. Epub 2007 Feb 13.
13. Distinct roles for hepcidin and interleukin-6 in the recovery from anemia in mice injected with heat-killed Brucella abortus. Gardenghi S, etal., Blood. 2014 Feb 20;123(8):1137-45. doi: 10.1182/blood-2013-08-521625. Epub 2013 Dec 19.
14. Hepcidin expression in colon during trinitrobenzene sulfonic acid-induced colitis in rats. Gotardo EM, etal., World J Gastroenterol. 2014 Apr 21;20(15):4345-52. doi: 10.3748/wjg.v20.i15.4345.
15.  Differences in hepatic expression of iron, inflammation and stress-related genes in patients with nonalcoholic steatohepatitis. Handa P, etal., Ann Hepatol. 2017 Jan-Feb 2017;16(1):77-85. doi: 10.5604/16652681.1226818.
16. Cholestasis downregulate hepcidin expression through inhibiting IL-6-induced phosphorylation of signal transducer and activator of transcription 3 signaling. Huang YH, etal., Lab Invest. 2009 Oct;89(10):1128-39. doi: 10.1038/labinvest.2009.82. Epub 2009 Aug 3.
17. Expression of the peptide hormone hepcidin increases in cardiomyocytes under myocarditis and myocardial infarction. Isoda M, etal., J Nutr Biochem. 2010 Aug;21(8):749-56. doi: 10.1016/j.jnutbio.2009.04.009. Epub 2009 Jul 16.
18. Inflammatory regulation of iron metabolism during thioacetamide-induced acute liver injury in rats. Izawa T, etal., Exp Toxicol Pathol. 2014 Mar;66(2-3):155-62. doi: 10.1016/j.etp.2013.12.002. Epub 2013 Dec 25.
19. Study of iron metabolism disturbances in an animal model of insulin resistance. Le Guenno G, etal., Diabetes Res Clin Pract. 2007 Mar 8;.
20. Does hepatic hepcidin play an important role in exercise-associated anemia in rats? Liu YQ, etal., Int J Sport Nutr Exerc Metab. 2011 Feb;21(1):19-26.
1 to 20 of 41 rows
1 to 10 of 22 rows
PMID:2995362   PMID:11113131   PMID:11447267   PMID:11930010   PMID:11985602   PMID:12393428   PMID:12477932   PMID:12704388   PMID:12704390   PMID:12729891   PMID:14564671   PMID:14604961  
PMID:14656876   PMID:14751922   PMID:15003819   PMID:15124018   PMID:15131800   PMID:15158327   PMID:15315977   PMID:15342464   PMID:15358563   PMID:15489334   PMID:15514116   PMID:15665091  
PMID:15684062   PMID:15793843   PMID:15914561   PMID:15932798   PMID:16081696   PMID:16141345   PMID:16239432   PMID:16330325   PMID:16339690   PMID:16574947   PMID:16648237   PMID:16737972  
PMID:16787915   PMID:16799992   PMID:16801541   PMID:17241879   PMID:17264297   PMID:17316628   PMID:17331161   PMID:17435114   PMID:17644736   PMID:17689119   PMID:17932563   PMID:18042040  
PMID:18316026   PMID:18451267   PMID:18521557   PMID:18539898   PMID:18653481   PMID:18664504   PMID:18800028   PMID:18948155   PMID:18991290   PMID:18997172   PMID:19008338   PMID:19059700  
PMID:19204324   PMID:19249912   PMID:19252486   PMID:19371723   PMID:19414861   PMID:19426170   PMID:19587376   PMID:19596281   PMID:19679815   PMID:19751239   PMID:19786029   PMID:19824072  
PMID:19898775   PMID:19924283   PMID:20053755   PMID:20065295   PMID:20113314   PMID:20169331   PMID:20177050   PMID:20219396   PMID:20338170   PMID:20511664   PMID:20530874   PMID:20562862  
PMID:20634490   PMID:20682319   PMID:20811044   PMID:21059897   PMID:21078691   PMID:21303570   PMID:21408141   PMID:21480335   PMID:21601942   PMID:21628413   PMID:21700773   PMID:21703414  
PMID:21841161   PMID:21873546   PMID:21873635   PMID:21907140   PMID:21993681   PMID:22045566   PMID:22084434   PMID:22128145   PMID:22144676   PMID:22207682   PMID:22264719   PMID:22383698  
PMID:22461476   PMID:22490684   PMID:22544439   PMID:22611157   PMID:22847740   PMID:22869521   PMID:22960056   PMID:22967998   PMID:22990014   PMID:23114598   PMID:23160767   PMID:23438894  
1 to 10 of 22 rows



Hamp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,641,793 - 30,643,454 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,641,793 - 30,643,457 (-)EnsemblGRCm39 Ensembl
GRCm38730,942,368 - 30,944,029 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,942,368 - 30,944,032 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,727,387 - 31,729,036 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,651,128 - 30,652,777 (-)NCBIMGSCv36mm8
Celera725,508,433 - 25,510,082 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.27NCBI
HAMP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,282,528 - 35,285,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,280,716 - 35,285,143 (+)EnsemblGRCh38hg38GRCh38
GRCh371935,773,431 - 35,776,046 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,465,250 - 40,467,886 (+)NCBINCBI36Build 36hg18NCBI36
Build 341940,465,249 - 40,467,883NCBI
Celera1932,486,848 - 32,489,484 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,282,038 - 32,284,542 (+)NCBIHuRef
CHM1_11935,775,030 - 35,777,667 (+)NCBICHM1_1
T2T-CHM13v2.01937,827,196 - 37,829,811 (+)NCBIT2T-CHM13v2.0
Hamp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,298,332 - 95,300,271 (-)NCBIGRCr8
mRatBN7.2186,170,926 - 86,172,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,170,901 - 86,172,891 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,591,061 - 91,592,997 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,057,225 - 100,059,161 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,349,359 - 93,351,295 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,368,021 - 89,369,960 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,368,021 - 89,369,960 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,523,506 - 90,525,473 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,978,120 - 85,980,059 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,056,230 - 86,058,170 (-)NCBI
Celera180,539,771 - 80,541,710 (-)NCBICelera
Cytogenetic Map1q21NCBI
Hamp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,575,510 - 4,577,649 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,576,080 - 4,577,591 (+)NCBIChiLan1.0ChiLan1.0
HAMP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,294,878 - 41,297,684 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,278,243 - 43,281,051 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,228,701 - 32,231,494 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11940,964,445 - 40,968,861 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1940,964,445 - 40,968,861 (+)Ensemblpanpan1.1panPan2
HAMP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,305,531 - 117,306,587 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,305,411 - 117,306,619 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,708,503 - 116,709,559 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,905,446 - 117,906,502 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,905,326 - 117,906,534 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,468,198 - 117,469,254 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,094,052 - 117,095,108 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,149,597 - 118,150,653 (-)NCBIUU_Cfam_GSD_1.0
Hamp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,634,907 - 10,636,644 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365701,009,312 - 1,010,686 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365701,009,344 - 1,010,654 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HAMP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,784,160 - 44,787,305 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1644,785,863 - 44,787,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,205,859 - 40,207,301 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HAMP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,214,820 - 30,218,100 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,215,563 - 30,217,996 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,989,379 - 7,992,640 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hamp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,257,760 - 8,259,264 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,257,760 - 8,259,243 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Hamp
141 total Variants

Predicted Target Of
Summary Value
Count of predictions:181
Count of miRNA genes:177
Interacting mature miRNAs:181
Transcripts:ENSMUST00000062620
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse

1 to 10 of 26 rows






Ensembl Acc Id: ENSMUST00000062620   ⟹   ENSMUSP00000055404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl730,641,793 - 30,643,457 (-)Ensembl
GRCm38.p6 Ensembl730,942,368 - 30,944,032 (-)Ensembl
RefSeq Acc Id: NM_032541   ⟹   NP_115930
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39730,641,793 - 30,643,454 (-)NCBI
GRCm38730,942,368 - 30,944,029 (-)NCBI
MGSCv37731,727,387 - 31,729,036 (-)RGD
Celera725,508,433 - 25,510,082 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein RefSeqs NP_115930 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG49293 (Get FASTA)   NCBI Sequence Viewer  
  AAH21587 (Get FASTA)   NCBI Sequence Viewer  
  AAM27440 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000055404
  ENSMUSP00000055404.8
GenBank Protein Q9EQ21 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_115930   ⟸   NM_032541
- Peptide Label: preproprotein
- UniProtKB: Q9EQ21 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000055404   ⟸   ENSMUST00000062620

Name Modeler Protein Id AA Range Protein Structure
AF-Q9EQ21-F1-model_v2 AlphaFold Q9EQ21 1-83 view protein structure

RGD ID:8663537
Promoter ID:EPDNEW_M9800
Type:multiple initiation site
Name:Hamp_1
Description:Mus musculus hepcidin antimicrobial peptide , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38730,944,029 - 30,944,089EPDNEW
RGD ID:6841273
Promoter ID:MM_KWN:49874
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Liver,   MEF_B6
Transcripts:NM_032541
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36731,728,856 - 31,729,607 (-)MPROMDB


1 to 12 of 12 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000050440 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000062620 ENTREZGENE
  ENSMUST00000062620.9 UniProtKB/Swiss-Prot
InterPro Hepcidin UniProtKB/Swiss-Prot
KEGG Report mmu:84506 UniProtKB/Swiss-Prot
MGD MGI:1933533 ENTREZGENE
NCBI Gene 84506 ENTREZGENE
PANTHER HEPCIDIN UniProtKB/Swiss-Prot
  PTHR16877 UniProtKB/Swiss-Prot
Pfam Hepcidin UniProtKB/Swiss-Prot
PhenoGen Hamp PhenoGen
UniProt HEPC_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
1 to 12 of 12 rows