Symbol:
Hamp
Name:
hepcidin antimicrobial peptide
RGD ID:
12518378
Description:
ENCODES a protein that exhibits copper ion binding (ortholog); iron ion transmembrane transporter inhibitor activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN acute-phase response (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); PARTICIPATES IN iron efflux pathway; ASSOCIATED WITH Alcoholic Liver Diseases (ortholog); anemia (ortholog); atransferrinemia (ortholog); FOUND IN apical cortex (ortholog); extracellular space (ortholog); intercalated disc (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
hepcidin; LOC101972117
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409349 10,634,907 - 10,636,644 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936570 1,009,312 - 1,010,686 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936570 1,009,344 - 1,010,654 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Hamp Squirrel Brugada syndrome 5 ISO RGD:736414 8554872 ClinVar Annotator: match by term: Brugada syndrome 5 ClinVar PMID:28492532 Hamp Squirrel dystonia ISO RGD:736414 8554872 ClinVar Annotator: match by term: Dystonic disorder ClinVar PMID:32581362 Hamp Squirrel genetic disease ISO RGD:736414 8554872 ClinVar Annotator: match by term: Inborn genetic diseases ClinVar PMID:25741868|PMID:28492532 Hamp Squirrel hemochromatosis ISO RGD:736414 8554872 ClinVar Annotator: match by term: Hemochromatosis, juvenile, digenic | ClinVar Annotator: match by term: Hereditary more ... ClinVar PMID:12915468|PMID:14630809|PMID:14670915|PMID:15024747|PMID:15082576|PMID:15099344|PMID:15198949|PMID:16141345|PMID:16199547|PMID:17576681|PMID:18809758|PMID:19214511|PMID:19787796|PMID:21088809|PMID:21411349|PMID:22297252|PMID:22924847|PMID:25741868|PMID:26310624|PMID:26547814|PMID:26799139|PMID:27007796|PMID:28492532|PMID:33016646|PMID:9536098 Hamp Squirrel hemochromatosis type 1 ISO RGD:736414 8554872 ClinVar Annotator: match by term: Hemochromatosis type 1 ClinVar PMID:12915468|PMID:19214511|PMID:28492532 Hamp Squirrel hemochromatosis type 2 ISO RGD:736414 8554872 ClinVar Annotator: match by term: Juvenile hemochromatosis ClinVar Hamp Squirrel hemochromatosis type 2A ISO RGD:736414 8554872 ClinVar Annotator: match by term: Hemochromatosis, type 2a, modifier of ClinVar PMID:12915468|PMID:19214511|PMID:28492532 Hamp Squirrel hemochromatosis type 2B ISO RGD:736414 8554872 ClinVar Annotator: match by term: Hemochromatosis type 2B ClinVar PMID:12469120|PMID:12915468|PMID:15082576|PMID:15099344|PMID:15198949|PMID:19214511|PMID:21088809|PMID:22297252|PMID:22924847|PMID:25741868|PMID:27007796|PMID:28492532|PMID:33016646 Hamp Squirrel hereditary spastic paraplegia 75 ISO RGD:736414 8554872 ClinVar Annotator: match by term: Hereditary spastic paraplegia 75 ClinVar PMID:28492532
Hamp Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409349 10,634,907 - 10,636,644 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936570 1,009,312 - 1,010,686 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936570 1,009,344 - 1,010,654 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
HAMP Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 19 35,282,528 - 35,285,143 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 19 35,280,716 - 35,285,143 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 19 35,773,431 - 35,776,046 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 19 40,465,250 - 40,467,886 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 19 40,465,249 - 40,467,883 NCBI Celera 19 32,486,848 - 32,489,484 (+) NCBI Celera Cytogenetic Map 19 q13.12 NCBI HuRef 19 32,282,038 - 32,284,542 (+) NCBI HuRef CHM1_1 19 35,775,030 - 35,777,667 (+) NCBI CHM1_1 T2T-CHM13v2.0 19 37,827,196 - 37,829,811 (+) NCBI T2T-CHM13v2.0
Hamp Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 7 30,641,793 - 30,643,454 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 7 30,641,793 - 30,643,457 (-) Ensembl GRCm39 Ensembl GRCm38 7 30,942,368 - 30,944,029 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 7 30,942,368 - 30,944,032 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 7 31,727,387 - 31,729,036 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 7 30,651,128 - 30,652,777 (-) NCBI MGSCv36 mm8 Celera 7 25,508,433 - 25,510,082 (-) NCBI Celera Cytogenetic Map 7 B1 NCBI cM Map 7 19.27 NCBI
Hamp Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 95,298,332 - 95,300,271 (-) NCBI GRCr8 mRatBN7.2 1 86,170,926 - 86,172,865 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 86,170,901 - 86,172,891 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 91,591,061 - 91,592,997 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 100,057,225 - 100,059,161 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 93,349,359 - 93,351,295 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 89,368,021 - 89,369,960 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 89,368,021 - 89,369,960 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 90,523,506 - 90,525,473 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 85,978,120 - 85,980,059 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 1 86,056,230 - 86,058,170 (-) NCBI Celera 1 80,539,771 - 80,541,710 (-) NCBI Celera Cytogenetic Map 1 q21 NCBI
Hamp Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955468 4,575,510 - 4,577,649 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955468 4,576,080 - 4,577,591 (+) NCBI ChiLan1.0 ChiLan1.0
HAMP Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 20 41,294,878 - 41,297,684 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 19 43,278,243 - 43,281,051 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 19 32,228,701 - 32,231,494 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 19 40,964,445 - 40,968,861 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 19 40,964,445 - 40,968,861 (+) Ensembl panpan1.1 panPan2
HAMP Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 1 117,305,531 - 117,306,587 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 1 117,305,411 - 117,306,619 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 1 116,708,503 - 116,709,559 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 1 117,905,446 - 117,906,502 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 1 117,905,326 - 117,906,534 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 1 117,468,198 - 117,469,254 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 1 117,094,052 - 117,095,108 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 1 118,149,597 - 118,150,653 (-) NCBI UU_Cfam_GSD_1.0
HAMP Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 44,784,160 - 44,787,305 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 44,785,863 - 44,787,303 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 40,205,859 - 40,207,301 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
HAMP Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 6 30,214,820 - 30,218,100 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 6 30,215,563 - 30,217,996 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666073 7,989,379 - 7,992,640 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Hamp
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000033235 ⟹ ENSSTOP00000031795
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936570 1,009,312 - 1,010,686 (-) Ensembl
RefSeq Acc Id:
XM_005330605 ⟹ XP_005330662
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024409349 10,634,907 - 10,636,644 (+) NCBI SpeTri2.0 NW_004936570 1,009,344 - 1,010,654 (-) NCBI
Sequence:
ATGGCACTGAACACCCAGATCCGGGCTGCCTGCCTCCTGCTCCTCCTCCTCGCCAGCCTGGCCACTGCCTCCAGCCTCCAGCAACAGACAGGGCAACTCACGAGGCAGCCCGCAGAGCGCCACCCCCA
hide sequence
RefSeq Acc Id:
XP_005330662 ⟸ XM_005330605
- UniProtKB:
A0A287DE06 (UniProtKB/TrEMBL)
- Sequence:
MALNTQIRAACLLLLLLASLATASSLQQQTGQLTRQPAERHPQYTAVTEAHLTPVSQRLRRRDTHIPICIFCCKCCTNSGCGICCKT
hide sequence
Ensembl Acc Id:
ENSSTOP00000031795 ⟸ ENSSTOT00000033235
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2022-08-09
Hamp
hepcidin antimicrobial peptide
LOC101972117
hepcidin antimicrobial peptide
Symbol and/or name change
5135510 APPROVED
2021-03-26
LOC101972117
hepcidin antimicrobial peptide
Hamp
hepcidin antimicrobial peptide
Symbol and/or name change
5135510 APPROVED
