Rps8-ps4 (ribosomal protein S8, pseudogene 4) - Rat Genome Database

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Gene: Rps8-ps4 (ribosomal protein S8, pseudogene 4) Mus musculus
Analyze
Symbol: Rps8-ps4
Name: ribosomal protein S8, pseudogene 4
RGD ID: 5146615
MGI Page MGI
Description: INTERACTS WITH 1,4-dioxane
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000074547; Gm10712
Related Functional Gene: Rps8  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39713,066,532 - 13,067,210 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl713,066,571 - 13,067,182 (-)EnsemblGRCm39 Ensembl
GRCm38713,332,607 - 13,333,285 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl713,332,646 - 13,333,257 (-)EnsemblGRCm38mm10GRCm38
MGSCv37713,917,909 - 13,931,948 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera710,949,240 - 10,963,280 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,4-dioxane  (EXP)

References

Genomics

Variants

.
Variants in Rps8-ps4
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENSMUST00000092523
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000092523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl713,066,571 - 13,067,182 (-)Ensembl
GRCm38.p6 Ensembl713,332,646 - 13,333,257 (-)Ensembl
RefSeq Acc Id: XM_003084685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37713,917,909 - 13,931,948 (-)ENTREZGENE
RefSeq Acc Id: XM_003086554
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera710,949,240 - 10,963,280 (-)ENTREZGENE
Protein Sequences
GenBank Protein EDL38059 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000074547 Ensembl, ENTREZGENE
MGD MGI:3809043 ENTREZGENE
NCBI Gene 100502877 ENTREZGENE
PhenoGen Rps8-ps4 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-26 Rps8-ps4  ribosomal protein S8, pseudogene 4  Gm10712  predicted gene 10712  Symbol and/or name change 5135510 APPROVED