Gm5058 (predicted gene 5058) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm5058 (predicted gene 5058) Mus musculus
Analyze
Symbol: Gm5058
Name: predicted gene 5058
RGD ID: 1623722
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L23a-like; EG270499; predicted gene, EG270499
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39732,403,898 - 32,404,365 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl732,403,902 - 32,404,364 (-)EnsemblGRCm39 Ensembl
GRCm38732,704,473 - 32,704,940 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl732,704,477 - 32,704,939 (-)EnsemblGRCm38mm10GRCm38
MGSCv37733,489,492 - 33,489,959 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36732,413,233 - 32,413,700 (-)NCBIMGSCv36mm8
Cytogenetic Map7B1NCBI
cM Map719.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

.
Variants in Gm5058
6 total Variants

1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse

1 to 10 of 28 rows





RefSeq Transcripts XM_036153634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000187331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl732,403,902 - 32,404,364 (-)Ensembl
GRCm38.p6 Ensembl732,704,477 - 32,704,939 (-)Ensembl
RefSeq Acc Id: XM_036153634   ⟹   XP_036009527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39732,403,898 - 32,404,365 (-)NCBI
Sequence:
Protein RefSeqs XP_036009527 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_036009527   ⟸   XM_036153634



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000100613 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000187331 ENTREZGENE
MGD MGI:3647682 ENTREZGENE
NCBI Gene 270499 ENTREZGENE
PhenoGen Gm5058 PhenoGen