Rpl17-ps9 (ribosomal protein L17, pseudogene 9) - Rat Genome Database

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Gene: Rpl17-ps9 (ribosomal protein L17, pseudogene 9) Mus musculus
Analyze
Symbol: Rpl17-ps9
Name: ribosomal protein L17, pseudogene 9
RGD ID: 2293987
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000066543; Gm10166; predicted gene, ENSMUSG00000066543; predicted pseudogene 10166
Related Functional Gene: Rpl17  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,817,664 - 35,818,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl735,817,699 - 35,818,253 (+)EnsemblGRCm39 Ensembl
GRCm38736,118,239 - 36,118,861 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl736,118,274 - 36,118,828 (+)EnsemblGRCm38mm10GRCm38
MGSCv37736,902,404 - 36,903,900 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36736,903,269 - 36,903,906 (+)NCBIMGSCv36mm8
Celera731,242,606 - 31,245,642 (+)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Rpl17-ps9
41 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:64
Interacting mature miRNAs:65
Transcripts:ENSMUST00000119541
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000119541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl735,817,699 - 35,818,253 (+)Ensembl
GRCm38.p6 Ensembl736,118,274 - 36,118,828 (+)Ensembl
RefSeq Acc Id: XM_001481155   ⟹   XP_001481205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38736,118,257 - 36,118,881 (+)NCBI
MGSCv37736,902,404 - 36,903,900 (+)RGD
cM Map7 ENTREZGENE
RefSeq Acc Id: XM_003086586   ⟹   XP_003086634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera731,242,606 - 31,245,640 (+)ENTREZGENE
Protein Sequences
GenBank Protein EDL03002 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_001481205   ⟸   XM_001481155
- Peptide Label: isoform 2
RefSeq Acc Id: XP_003086634   ⟸   XM_003086586


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000066543 Ensembl, ENTREZGENE
MGD MGI:3641818 ENTREZGENE
NCBI Gene 100043872 ENTREZGENE
PhenoGen Rpl17-ps9 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-12 Rpl17-ps9  ribosomal protein L17, pseudogene 9  Gm10166  predicted pseudogene 10166  Symbol and/or name change 5135510 APPROVED
2011-07-27 Gm10166  predicted pseudogene 10166  Gm10166  predicted gene 10166  Symbol and/or name change 5135510 APPROVED