Ass-ps1 (argininosuccinate synthetase pseudogene 1) - Rat Genome Database

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Gene: Ass-ps1 (argininosuccinate synthetase pseudogene 1) Mus musculus
Analyze
Symbol: Ass-ps1
Name: argininosuccinate synthetase pseudogene 1
RGD ID: 5143045
MGI Page MGI
Description: Is expressed in skeletal muscle.
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Gm18516; predicted gene, 18516
Related Functional Gene: Ass1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,640,606 - 15,641,517 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,640,613 - 15,641,572 (+)EnsemblGRCm39 Ensembl
GRCm38715,906,681 - 15,907,592 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl715,906,688 - 15,907,647 (+)EnsemblGRCm38mm10GRCm38
MGSCv37716,492,030 - 16,492,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera713,105,364 - 13,106,275 (+)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
triptonide  (EXP)

References
Additional References at PubMed
PMID:25940086  


Genomics

Variants

.
Variants in Ass-ps1
28 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_019172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC148990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000197717
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl715,640,613 - 15,641,572 (+)Ensembl
GRCm38.p6 Ensembl715,906,688 - 15,907,647 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000106050 Ensembl, ENTREZGENE
MGD MGI:88088 ENTREZGENE
NCBI Gene 100417301 ENTREZGENE
PhenoGen Ass-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Ass-ps1  argininosuccinate synthetase pseudogene 1  Gm18516  predicted gene, 18516  Symbol and/or name change 5135510 APPROVED