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ONTOLOGY REPORT - ANNOTATIONS


Term:vacuole organization
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Accession:GO:0007033 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole.
Synonyms:exact_synonym: vacuole organisation
 narrow_synonym: vacuolar assembly
 related_synonym: vacuole biogenesis;   vacuole organization and biogenesis
 alt_id: GO:0044086



show annotations for term's descendants           Sort by:
vacuole organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3720850 (PMID:21533046)
Ensembl
RGD
PMID:21533046 GO_REF:0000107 NCBI chr 3:79,125,814...79,202,896 JBrowse link
G B4galnt1 beta-1,4-N-acetyl-galactosaminyl transferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1351641 (PMID:22867887)
Ensembl
RGD
PMID:22867887 GO_REF:0000107 NCBI chr 7:62,988,429...62,996,190 JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:18480751) RGD PMID:18480751 NCBI chr 7:86,265,651...86,544,488 JBrowse link
G Fig4 FIG4 phosphoinositide 5-phosphatase acts_upstream_of_or_within ISO MGI:3716838 (PMID:17572665) RGD PMID:17572665 NCBI chr20:44,600,603...44,724,047 JBrowse link
G Fsip1 fibrous sheath interacting protein 1 acts_upstream_of_or_within ISO (PMID:33901807) RGD PMID:33901807 NCBI chr 3:105,074,584...105,217,180 JBrowse link
G Garin2 golgi associated RAB2 interactor family member 2 acts_upstream_of_or_within ISO (PMID:38935810) RGD PMID:38935810 NCBI chr 6:97,489,562...97,534,729 JBrowse link
G Garin3 golgi associated RAB2 interactor family member 3 acts_upstream_of_or_within ISO (PMID:38935810) RGD PMID:38935810 NCBI chr10:30,829,877...30,833,115 JBrowse link
G Garin5a golgi associated RAB2 interactor 5A acts_upstream_of_or_within ISO (PMID:38935810) RGD PMID:38935810 NCBI chr 1:94,988,959...94,995,971 JBrowse link
G Garin5b golgi associated RAB2 interactor family member 5B acts_upstream_of_or_within ISO (PMID:38935810) RGD PMID:38935810 NCBI chr 1:69,076,839...69,093,877 JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 acts_upstream_of_or_within ISO MGI:2150656 (PMID:16754854) RGD PMID:16754854 NCBI chr 9:111,698,913...111,855,257 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1342057|MGI:1934018 (PMID:21408219), (PMID:22867887), (PMID:26147524), (PMID:26607664) RGD PMID:21408219 PMID:22867887 PMID:26147524 PMID:26607664 NCBI chr10:86,001,545...86,009,049 JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3774275 (PMID:25012822)
Ensembl
RGD
PMID:25012822 GO_REF:0000107 NCBI chr 5:62,678,197...62,697,360 JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:53,580,939...53,595,378 JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:117,622,534...117,644,041 JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:34,934,999...34,948,888 JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:22,907,105...22,932,200 JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in IEA
ISO
GO_REF:0000107
MGI:1857091 (PMID:11403940)
Ensembl
RGD
PMID:11403940 GO_REF:0000107 NCBI chr14:95,378,821...95,455,871 JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IBA
(PMID:20921139), (PMID:25215947)
GO_REF:0000033
(PMID:23524951)
RGD
GO_Central
PMID:20921139 PMID:23524951 PMID:25215947 GO_REF:0000033 NCBI chr 3:98,156,626...98,345,876 JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO
ISS
(PMID:29180427)
GO_REF:0000024
RGD
UniProt
PMID:29180427 GO_REF:0000024 NCBI chr12:17,049,766...17,055,954 JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:12,093,834...12,109,043 JBrowse link
G Atg10 autophagy related 10 involved_in ISO
IBA
(PMID:16963840)
GO_REF:0000033
RGD
GO_Central
PMID:16963840 GO_REF:0000033 NCBI chr 2:23,843,695...24,133,459 JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IBA
IEA
(PMID:19225151), (PMID:19597335)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:19225151 PMID:19597335 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:132,398,477...132,407,643 JBrowse link
G Atg12 autophagy related 12 involved_in IEA
IBA
ISO
GO_REF:0000002
GO_REF:0000033
(PMID:11266458)
InterPro
GO_Central
RGD
PMID:11266458 GO_REF:0000002 GO_REF:0000033 NCBI chr18:41,638,841...41,649,311 JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in
ISO (PMID:19211835)
(PMID:19225151), (PMID:19258318)
(PMID:19211835), (PMID:19225151)
RGD PMID:19211835 PMID:19225151 PMID:19258318 NCBI chr 3:77,647,069...77,681,028 JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IBA
(PMID:19270696), (PMID:20713597)
GO_REF:0000033
RGD
GO_Central
PMID:19270696 PMID:20713597 GO_REF:0000033 NCBI chr15:23,275,457...23,306,817 JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO
IBA
(PMID:30778222)
(PMID:11266458)
GO_REF:0000033
RGD
GO_Central
PMID:11266458 PMID:30778222 GO_REF:0000033 NCBI chr 9:95,869,839...95,905,354 JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (PMID:22082872)
(PMID:11266458)
RGD PMID:11266458 PMID:22082872 NCBI chr 1:155,687,386...155,703,419 JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IBA
(PMID:28561066)
GO_REF:0000033
RGD
GO_Central
PMID:28561066 GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242 JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:124,522,283...124,592,412 JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:20723759), (PMID:24747438)
(PMID:21220506)
GO_REF:0000033
GO_REF:0000107
(PMID:33446636)
UniProt
RGD
GO_Central
Ensembl
PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:55,624,914...55,653,249 JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758 JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
(PMID:25578879)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 PMID:25578879 GO_REF:0000033 NCBI chr 9:101,729,772...101,761,456 JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 GO_REF:0000033 NCBI chr 5:113,867,218...113,935,534 JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 GO_REF:0000033 NCBI chr 8:19,807,733...19,817,321 JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IMP
IBA
ISO
IEA
GO_REF:0000033
(PMID:11266458)
(PMID:23704209)
GO_REF:0000107
(PMID:23202584)
GO_Central
RGD
Ensembl
PMID:11266458 PMID:23202584 PMID:23704209 PMID:16420522 GO_REF:0000033 GO_REF:0000107, RGD:1643189 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:22170151)
GO_REF:0000033
(PMID:20080761)
(PMID:23704209)
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:20080761 PMID:22170151 PMID:23704209 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in
ISO
IEA
ISS
(PMID:15755735), (PMID:22456507)
GO_REF:0000107
MGI:4417824 (PMID:22456507), (PMID:23402761)
GO_REF:0000024
(PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622)
RGD
Ensembl
UniProt
PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... GO_REF:0000024 GO_REF:0000107 NCBI chr 9:76,677,403...76,688,050 JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) RGD PMID:15755735 NCBI chr 4:10,784,934...10,793,832 JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:28890335)
UniProt
GO_Central
RGD
PMID:28890335 GO_REF:0000024 GO_REF:0000033 NCBI chr12:34,072,710...34,122,142 JBrowse link
G Becn1 beclin 1 involved_in IMP
ISO
IBA
ISS
(PMID:23332761)
GO_REF:0000033
(PMID:25891078)
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:23332761 PMID:25891078 PMID:16420522 GO_REF:0000024 GO_REF:0000033, RGD:1643189 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:90,375,186...90,424,533 JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15452145)
GO_REF:0000107
RGD
Ensembl
PMID:15452145 GO_REF:0000107 NCBI chr 1:206,956,945...206,968,821 JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IBA
(PMID:21072319)
GO_REF:0000033
RGD
GO_Central
PMID:21072319 GO_REF:0000033 NCBI chr 2:198,777,323...198,856,497 JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA
(PMID:23182941)
GO_REF:0000033
RGD
GO_Central
PMID:23182941 GO_REF:0000033 NCBI chr10:57,794,072...57,795,671 JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2182627 (PMID:24430976)
Ensembl
RGD
PMID:24430976 GO_REF:0000107 NCBI chr 1:5,727,111...5,845,338 JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787 JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474 JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662 JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:98,126,056...98,127,013 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:71,949,837...71,950,435 JBrowse link
G Ifgga2l1 interferon-gamma-inducible GTPase 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,761,118...53,770,183 JBrowse link
G Ifgga2l2 interferon-gamma-inducible GTPase 2 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,870,838...53,890,135 JBrowse link
G Ifgga4l interferon-gamma-inducible GTPase 4 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,838,426...53,854,858 JBrowse link
G Ifi47 interferon gamma inducible protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,297,618...33,305,248 JBrowse link
G Igtp interferon gamma induced GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:42,374,590...42,382,410 JBrowse link
G Irgm immunity-related GTPase M involved_in ISO
IBA
(PMID:16888103)
GO_REF:0000033
RGD
GO_Central
PMID:16888103 GO_REF:0000033 NCBI chr10:33,233,513...33,241,594 JBrowse link
G LOC134483037 interferon-inducible GTPase 1-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IBA
IDA
(PMID:24290141)
GO_REF:0000033
PMID:11060023
RGD
GO_Central
PMID:24290141 PMID:11060023 GO_REF:0000033, RGD:8554284 NCBI chr 3:164,243,204...164,244,850 JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA
(PMID:37943659)
GO_REF:0000033
RGD
GO_Central
PMID:37943659 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270 JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO MGI:2450997 (PMID:23695157) RGD PMID:23695157 NCBI chr 6:488,923...506,882 JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:160,438,708...160,463,261 JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:132,096,992...132,156,702 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
(PMID:24098492)
GO_REF:0000033
(PMID:33637724)
RGD
GO_Central
PMID:24098492 PMID:33637724 PMID:12453151 GO_REF:0000033, RGD:2303129 NCBI chr18:22,119,677...22,203,546 JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2149116 (PMID:15452145) RGD PMID:15452145 NCBI chr 6:109,054,160...109,106,191 JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:68,157,159...68,166,889 JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS
(PMID:22939626)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:22939626 GO_REF:0000024 GO_REF:0000033 NCBI chr14:98,623,582...98,648,766 JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,405,759...202,413,850 JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IBA
(PMID:22452336)
GO_REF:0000033
RGD
GO_Central
PMID:22452336 GO_REF:0000033 NCBI chr 9:35,943,522...35,967,367 JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:127,694,219...127,706,378 JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IBA
ISO
GO_REF:0000033
(PMID:18448665)
GO_Central
RGD
PMID:18448665 GO_REF:0000033 NCBI chr 2:135,528,116...135,538,719 JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,249,650...120,269,174 JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:120,461,966...120,510,756 JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO
IBA
(PMID:19225151), (PMID:28890335)
(PMID:19225151), (PMID:19258318)
GO_REF:0000033
(PMID:23392225)
RGD
GO_Central
PMID:19225151 PMID:19258318 PMID:23392225 PMID:28890335 GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560 JBrowse link
G RGD1309362 similar to interferon-inducible GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G RGD1559575 similar to novel protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,252,146...33,276,364 JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IBA
(PMID:26416964)
GO_REF:0000033
RGD
GO_Central
PMID:26416964 GO_REF:0000033 NCBI chr 9:75,702,937...75,727,719 JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724)
GO_REF:0000107
UniProt
RGD
GO_Central
Ensembl
PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544 JBrowse link
G Stx12 syntaxin 12 involved_in ISO
IBA
IEA
(PMID:24095276)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:24095276 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:150,347,554...150,376,426 JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267 JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO (PMID:23908015) RGD PMID:23908015 NCBI chr 1:210,556,270...210,568,021 JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:30093494), (PMID:30126924), (PMID:30933966)
UniProt
GO_Central
RGD
PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:164,012,585...164,026,967 JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:29,051,267...29,069,486 JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IBA
IEA
ISS
(PMID:19056683)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:19056683 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:143,881,427...143,890,104 JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO
IEA
(PMID:23524951)
GO_REF:0000107
RGD
Ensembl
PMID:23524951 GO_REF:0000107 NCBI chr 3:87,963,517...87,988,316 JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483 JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO
IBA
IEA
(PMID:20529957)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:20529957 GO_REF:0000033 GO_REF:0000107 NCBI chr17:6,439,002...6,477,096 JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,853,086...17,856,505 JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,884,364...27,912,767 JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:19,303,634...19,333,181 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA
(PMID:19225151), (PMID:28890335)
GO_REF:0000033
(PMID:19225151), (PMID:19258318)
RGD
GO_Central
PMID:19225151 PMID:19258318 PMID:28890335 GO_REF:0000033 NCBI chr12:51,511,492...51,537,746 JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844 JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380 JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IBA
IEA
ISS
(PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:71,903,223...72,002,337 JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS
(PMID:28561066)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:107,097,655...107,127,839 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:95,042,451...95,079,679 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:20505359), (PMID:28561066), (PMID:28890335)
UniProt
RGD
PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 NCBI chr12:17,024,876...17,053,306 JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) RGD PMID:22186024 NCBI chr 5:153,292,722...153,312,143 JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) RGD PMID:23707074 NCBI chr 2:176,902,141...176,916,015 JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685045 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:180,012,248...180,117,786 JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO MGI:1203729 (PMID:24098492) RGD PMID:24098492 NCBI chr13:47,046,866...47,107,733 JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) RGD PMID:25365221 NCBI chr 3:109,007,658...109,072,904 JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25365221)
GO_REF:0000107
RGD
Ensembl
PMID:25365221 GO_REF:0000107 NCBI chr 6:98,031,874...98,095,538 JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520 JBrowse link
lysosomal lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO
IEA
ISS
(PMID:32276428)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:32276428 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:10,183,983...10,210,948 JBrowse link
G Ccdc115 coiled-coil domain containing 115 involved_in ISO (PMID:28296633) RGD PMID:28296633 NCBI chr 9:36,650,384...36,654,348 JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IBA
(PMID:11722572)
GO_REF:0000033
RGD
GO_Central
PMID:11722572 GO_REF:0000033 NCBI chr 1:181,156,071...181,169,458 JBrowse link
G Cln5 CLN5, intracellular trafficking protein involved_in ISO (PMID:11722572) RGD PMID:11722572 NCBI chr15:79,893,573...79,903,438 JBrowse link
G Cln6 CLN6, transmembrane ER protein involved_in ISO (PMID:11722572) RGD PMID:11722572 NCBI chr 8:63,303,356...63,318,360 JBrowse link
G Creg1 cellular repressor of E1A-stimulated genes 1 acts_upstream_of_or_within ISO (PMID:33966596) RGD PMID:33966596 NCBI chr13:80,552,779...80,565,272 JBrowse link
G Grn granulin precursor involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:28073925)
UniProt
Ensembl
RGD
PMID:28073925 GO_REF:0000024 GO_REF:0000107 NCBI chr10:87,387,672...87,393,777 JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:37390818)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:37390818 GO_REF:0000024 GO_REF:0000107 NCBI chr16:83,058,131...83,082,843 JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:37390818)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:37390818 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:122,038,734...122,087,745 JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 involved_in ISO
ISS
(PMID:11722572)
PMID:8895569
RGD PMID:11722572 PMID:8895569 RGD:8553248 NCBI chr 5:135,121,164...135,142,048 JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (PMID:20920792) RGD PMID:20920792 NCBI chr 2:175,971,575...175,974,164 JBrowse link
G Tmem106b transmembrane protein 106B acts_upstream_of_or_within ISO MGI:5319917 (PMID:28728022) RGD PMID:28728022 NCBI chr 4:41,328,125...41,347,315 JBrowse link
G Tmem199 transmembrane protein 199 involved_in ISO
IEA
ISS
(PMID:28296633)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28296633 GO_REF:0000024 GO_REF:0000107 NCBI chr10:63,402,493...63,407,065 JBrowse link
G Tmem9 transmembrane protein 9 involved_in ISO (PMID:30374053) RGD PMID:30374053 NCBI chr13:50,008,829...50,027,556 JBrowse link
lysosomal lumen pH elevation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:10924275) RGD PMID:10924275 NCBI chr 1:181,156,071...181,169,458 JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in ISO (PMID:25513726), (PMID:32966160) RGD PMID:25513726 PMID:32966160 NCBI chr 1:107,116,278...107,446,093 JBrowse link
G Slc45a2 solute carrier family 45, member 2 involved_in ISO (PMID:32966160)
(PMID:35469906)
RGD PMID:32966160 PMID:35469906 NCBI chr 2:59,963,599...59,996,408 JBrowse link
G Tmem175 transmembrane protein 175 involved_in ISS
ISO
GO_REF:0000024
(PMID:35333573), (PMID:35750034), (PMID:37390818)
UniProt
RGD
PMID:35333573 PMID:35750034 PMID:37390818 GO_REF:0000024 NCBI chr14:1,073,410...1,089,764 JBrowse link
lysosomal membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ARF GTPase 1 IDA RGD PMID:9538255 RGD:9684948 NCBI chr10:44,497,543...44,513,994 JBrowse link
G Atp10b ATPase phospholipid transporting 10B involved_in ISO (PMID:32172343) RGD PMID:32172343 NCBI chr10:27,495,207...27,751,313 JBrowse link
lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (PMID:15163665) RGD PMID:15163665 NCBI chr 5:72,473,676...72,596,563 JBrowse link
G Acp2 acid phosphatase 2, lysosomal acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:2180084|MGI:3574793 (PMID:15604265), (PMID:9228031)
GO_REF:0000033
RGD
GO_Central
PMID:9228031 PMID:15604265 GO_REF:0000033 NCBI chr 3:77,175,022...77,185,180 JBrowse link
G Aktip AKT interacting protein involved_in ISO
IEA
ISS
(PMID:18799622)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:18799622 GO_REF:0000024 GO_REF:0000107 NCBI chr19:15,866,811...15,877,123 JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (PMID:30786955), (PMID:9931340) RGD PMID:9931340 PMID:30786955 NCBI chr 2:27,331,241...27,535,683 JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO (PMID:37871017) RGD PMID:37871017 NCBI chr12:12,093,834...12,109,043 JBrowse link
G Arsg arylsulfatase G acts_upstream_of_or_within ISO (PMID:26975023) RGD PMID:26975023 NCBI chr10:94,412,261...94,551,224 JBrowse link
G Becn1 beclin 1 acts_upstream_of_or_within ISO MGI:2683696 (PMID:18497889) RGD PMID:18497889 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Chmp5 charged multivesicular body protein 5 acts_upstream_of_or_within ISO MGI:3626293 (PMID:16567502) RGD PMID:16567502 NCBI chr 5:60,877,369...60,894,512 JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1933976|MGI:2388887|MGI:3623134 (PMID:10191119), (PMID:10440905), (PMID:10527801), (PMID:15588329)
GO_Central
RGD
PMID:10191119 PMID:10440905 PMID:10527801 PMID:15588329 GO_REF:0000033 NCBI chr 1:181,156,071...181,169,458 JBrowse link
G Cln5 CLN5, intracellular trafficking protein involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3521802 (PMID:15459177)
GO_Central
RGD
PMID:15459177 GO_REF:0000033 NCBI chr15:79,893,573...79,903,438 JBrowse link
G Cln6 CLN6, transmembrane ER protein involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2159328 (PMID:26681805), (PMID:9600738)
GO_Central
RGD
PMID:9600738 PMID:26681805 GO_REF:0000033 NCBI chr 8:63,303,356...63,318,360 JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO MGI:1856959 (PMID:10087069), (PMID:7613514), (PMID:8144516), (PMID:8160780) RGD PMID:7613514 PMID:8144516 PMID:8160780 PMID:10087069 NCBI chr16:74,749,662...74,759,553 JBrowse link
G Clvs1 clavesin 1 involved_in IMP
IBA
PMID:19651769
GO_REF:0000033
GO_Central PMID:19651769 GO_REF:0000033, RGD:8553526 NCBI chr 5:22,408,384...22,604,281 JBrowse link
G Clvs2 clavesin 2 involved_in IMP
IBA
PMID:19651769
GO_REF:0000033
GO_Central PMID:19651769 GO_REF:0000033, RGD:8553526 NCBI chr 1:23,735,660...23,842,685 JBrowse link
G Creg1 cellular repressor of E1A-stimulated genes 1 acts_upstream_of_or_within ISO (PMID:33966596) RGD PMID:33966596 NCBI chr13:80,552,779...80,565,272 JBrowse link
G Fhip1b FHF complex subunit HOOK interacting protein 1B involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:18799622)
UniProt
GO_Central
Ensembl
RGD
PMID:18799622 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:159,718,679...159,748,449 JBrowse link
G Gaa alpha glucosidase involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:2148550|MGI:2179961 (PMID:10547605), (PMID:11328962), (PMID:12115977), (PMID:15169761), (PMID:9384603), (PMID:9668092)
GO_REF:0000033
(PMID:7717400)
Ensembl
RGD
GO_Central
PMID:7717400 PMID:9384603 PMID:9668092 PMID:10547605 PMID:11328962 More... GO_REF:0000033 GO_REF:0000107 NCBI chr10:104,529,673...104,546,836 JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in ISO (PMID:27378698) RGD PMID:27378698 NCBI chr 2:176,902,141...176,916,015 JBrowse link
G Gnptab N-acetylglucosamine-1-phosphate transferase subunits alpha and beta involved_in ISO (PMID:21719679) RGD PMID:21719679 NCBI chr 7:24,687,923...24,754,821 JBrowse link
G Grn granulin precursor involved_in ISS
ISO
GO_REF:0000024
(PMID:27789271)
UniProt
RGD
PMID:27789271 GO_REF:0000024 NCBI chr10:87,387,672...87,393,777 JBrowse link
G Hexa hexosaminidase subunit alpha acts_upstream_of_or_within ISO MGI:1857181|MGI:2429698|MGI:3581540|MGI:96074 (PMID:10591619), (PMID:14972652), (PMID:7937929), (PMID:8747922), (PMID:8896570), (PMID:9103204), (PMID:9184660), (PMID:9302266), (PMID:9645704) RGD PMID:7937929 PMID:8747922 PMID:8896570 PMID:9103204 PMID:9184660 More... NCBI chr 8:59,936,526...59,961,654 JBrowse link
G Hexb hexosaminidase subunit beta involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2429701|MGI:96073 (PMID:8789434), (PMID:8896570), (PMID:9184660), (PMID:9645704)
Ensembl
RGD
PMID:8789434 PMID:8896570 PMID:9184660 PMID:9645704 GO_REF:0000107 NCBI chr 2:28,483,997...28,504,165 JBrowse link
G Hook1 hook microtubule-tethering protein 1 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr 5:115,940,199...116,003,482 JBrowse link
G Hook2 hook microtubule-tethering protein 2 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr19:23,151,869...23,170,139 JBrowse link
G Hook3 hook microtubule-tethering protein 3 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr16:72,656,929...72,751,696 JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:30786955) RGD PMID:30786955 NCBI chr 1:241,551,180...241,577,292 JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 involved_in ISO (PMID:12663659) RGD PMID:12663659 NCBI chr12:44,264,037...44,294,791 JBrowse link
G Hsd17b1 hydroxysteroid (17-beta) dehydrogenase 1 acts_upstream_of_or_within ISO MGI:3799948 (PMID:29180785) RGD PMID:29180785 NCBI chr10:86,009,728...86,011,928 JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236|MGI:4415188 (PMID:19751987), (PMID:9097952) RGD PMID:9097952 PMID:19751987 NCBI chr14:1,031,588...1,059,494 JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:19177150)
GO_REF:0000002
UniProt
RGD
InterPro
PMID:19177150 GO_REF:0000002 GO_REF:0000024 NCBI chr 1:165,684,001...165,689,698 JBrowse link
G Lamtor1l1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 like 1 involved_in ISS
IEA
GO_REF:0000024
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000024 NCBI chr  X:34,637,460...34,638,509 JBrowse link
G Lipa lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2451080 (PMID:25807535), (PMID:29374543)
Ensembl
RGD
PMID:25807535 PMID:29374543 GO_REF:0000107 NCBI chr 1:241,437,524...241,470,936 JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:25416817) RGD PMID:25416817 NCBI chr 7:124,706,246...124,867,234 JBrowse link
G Lyset lysosomal enzyme trafficking factor involved_in ISS
ISO
GO_REF:0000024
(PMID:36096887)
UniProt
RGD
PMID:36096887 GO_REF:0000024 NCBI chr 6:121,884,577...121,886,319 JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968|MGI:1855969 (PMID:1113502), (PMID:4031470), (PMID:4697831), (PMID:6170520), (PMID:9368050) RGD PMID:1113502 PMID:4031470 PMID:4697831 PMID:6170520 PMID:9368050 NCBI chr17:86,241,384...86,443,501 JBrowse link
G Mbtps1 membrane-bound transcription factor peptidase, site 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21719679)
UniProt
Ensembl
RGD
PMID:21719679 GO_REF:0000024 GO_REF:0000107 NCBI chr19:47,561,598...47,612,769 JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:4456699 (PMID:24423645), (PMID:26681805), (PMID:35025759)
GO_REF:0000033
RGD
GO_Central
PMID:24423645 PMID:26681805 PMID:35025759 GO_REF:0000033 NCBI chr 2:123,822,042...123,847,808 JBrowse link
G Myo7a myosin VIIA involved_in ISO (PMID:16001398) RGD PMID:16001398 NCBI chr 1:152,342,611...152,414,171 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:17712420), (PMID:19632871), (PMID:25524704), (PMID:26607664) RGD PMID:17712420 PMID:19632871 PMID:25524704 PMID:26607664 NCBI chr10:86,001,545...86,009,049 JBrowse link
G Pi4kb phosphatidylinositol 4-kinase beta involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:25365221)
Ensembl
RGD
PMID:25365221 GO_REF:0000107 NCBI chr 2:185,229,392...185,261,697 JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 acts_upstream_of_or_within ISO MGI:2176390|MGI:3527191 (PMID:16368712), (PMID:16542649) RGD PMID:16368712 PMID:16542649 NCBI chr 5:135,121,164...135,142,048 JBrowse link
G Snapin SNAP-associated protein involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3608768 (PMID:20920792)
GO_Central
RGD
PMID:20920792 GO_REF:0000033 NCBI chr 2:175,971,575...175,974,164 JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221)
MGI:4377985|MGI:6451766 (PMID:26284655), (PMID:28237315), (PMID:31637311), (PMID:37871017)
RGD PMID:25365221 PMID:26284655 PMID:28237315 PMID:31637311 PMID:37871017 NCBI chr 3:109,007,658...109,072,904 JBrowse link
G Tfe3 transcription factor binding to IGHM enhancer 3 involved_in ISO (PMID:24448649) RGD PMID:24448649 NCBI chr  X:14,729,547...14,742,830 JBrowse link
G Tfeb transcription factor EB acts_upstream_of_or_within
involved_in
ISO (PMID:31637311)
(PMID:23434374), (PMID:32612235), (PMID:32753672), (PMID:35662396)
RGD PMID:23434374 PMID:31637311 PMID:32612235 PMID:32753672 PMID:35662396 NCBI chr 9:20,696,440...20,752,265 JBrowse link
G Tmem106b transmembrane protein 106B involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:25066864)
GO_Central
RGD
PMID:25066864 GO_REF:0000033 NCBI chr 4:41,328,125...41,347,315 JBrowse link
G Tpcn2 two pore segment channel 2 involved_in ISO UniProtKB:Q8NHX9 (PMID:25416817) RGD PMID:25416817 NCBI chr 1:209,845,827...209,875,561 JBrowse link
G Tpp1 tripeptidyl peptidase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3521972 (PMID:15483130)
Ensembl
RGD
PMID:15483130 GO_REF:0000107 NCBI chr 1:160,097,984...160,104,108 JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in ISO
IBA
(PMID:18799622)
GO_REF:0000033
RGD
GO_Central
PMID:18799622 GO_REF:0000033 NCBI chr 3:106,279,444...106,290,298 JBrowse link
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:26203154) RGD PMID:26203154 NCBI chr19:21,765,771...21,801,620 JBrowse link
G Washc5 WASH complex subunit 5 acts_upstream_of_or_within ISO MGI:6246601 (PMID:30061306) RGD PMID:30061306 NCBI chr 7:90,884,192...90,936,096 JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25365221)
GO_REF:0000107
(PMID:37871017)
RGD
Ensembl
PMID:25365221 PMID:37871017 GO_REF:0000107 NCBI chr 6:98,031,874...98,095,538 JBrowse link
G Zkscan3 zinc finger with KRAB and SCAN domains 3 involved_in ISO (PMID:23434374) RGD PMID:23434374 NCBI chr17:43,217,168...43,232,828 JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:16554368) RGD PMID:16554368 NCBI chr 4:103,576,453...103,622,566 JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO MGI:2683833 (PMID:27994061) RGD PMID:27994061 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:3,924,263...3,941,238 JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
ISS
(PMID:25495476)
GO_REF:0000024
RGD
GO_Central
PMID:25495476 GO_REF:0000024 NCBI chr 8:36,544,462...36,589,684 JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25495476)
GO_Central
Ensembl
RGD
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:16,654,572...16,694,628 JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:23916833) RGD PMID:23916833 NCBI chr 7:124,706,246...124,867,234 JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2450997 (PMID:23695157)
GO_Central
RGD
PMID:23695157 GO_REF:0000033 NCBI chr 6:488,923...506,882 JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
ISO
GO_REF:0000024
(PMID:20181828)
UniProt
RGD
PMID:20181828 GO_REF:0000024 NCBI chr 1:190,643,866...190,645,901 JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS
(PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,718,663...54,722,784 JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:155,813,838...155,825,950 JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 6:68,795,810...68,874,076 JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:185,500,029...185,520,811 JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,957,146...45,968,388 JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA
ISS
(PMID:31806350)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:31806350 GO_REF:0000024 GO_REF:0000033 NCBI chr11:62,160,631...62,189,964 JBrowse link
negative regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Flcn folliculin involved_in ISO (PMID:37079666) RGD PMID:37079666 NCBI chr10:45,088,164...45,107,581 JBrowse link
G Fnip1 folliculin interacting protein 1 involved_in ISO (PMID:37079666) RGD PMID:37079666 NCBI chr10:39,068,432...39,151,552 JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
ISS
IEA
(PMID:24448649), (PMID:32612235)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:24448649 PMID:32612235 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438 JBrowse link
phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin 1A involved_in ISO (PMID:12132654) RGD PMID:12132654 NCBI chr 1:181,295,561...181,300,566 JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:2155422 (PMID:12743369) RGD PMID:12743369 NCBI chr 1:152,342,611...152,414,171 JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO MGI:3606250 (PMID:11544318) RGD PMID:11544318 NCBI chr12:39,550,531...39,594,984 JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:38,899,430...38,920,572 JBrowse link
G Srpx sushi-repeat-containing protein, X-linked involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3706175 (PMID:19368996)
GO_Central
RGD
PMID:19368996 GO_REF:0000033 NCBI chr  X:15,349,498...15,420,389 JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458 JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISS
ISO
GO_REF:0000024
(PMID:21802320)
UniProt
RGD
PMID:21802320 GO_REF:0000024 NCBI chr 4:141,748,634...141,792,605 JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458 JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IBA
(PMID:28779020)
GO_REF:0000033
RGD
GO_Central
PMID:28779020 GO_REF:0000033 NCBI chr 9:74,057,488...74,151,610 JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO
GO_REF:0000024
(PMID:19342668)
UniProt
RGD
PMID:19342668 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065 JBrowse link
G Rab20 RAB20, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr16:84,721,427...84,745,610 JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:23197834)
GO_REF:0000033
GO_REF:0000107
(PMID:21255211)
UniProt
RGD
GO_Central
Ensembl
PMID:21255211 PMID:23197834 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,581,542...63,585,608 JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in ISO
IBA
(PMID:21255211)
GO_REF:0000033
RGD
GO_Central
PMID:21255211 GO_REF:0000033 NCBI chr 8:54,088,246...54,105,867 JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
IBA
ISS
(PMID:21255211)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:21255211 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:120,461,966...120,510,756 JBrowse link
G Rab7b Rab7b, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:45,673,396...45,699,798 JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:16982801)
UniProt
RGD
PMID:16982801 GO_REF:0000024 NCBI chr 1:207,031,359...207,093,787 JBrowse link
G Tmem175 transmembrane protein 175 involved_in ISS
ISO
GO_REF:0000024
(PMID:26317472)
UniProt
RGD
PMID:26317472 GO_REF:0000024 NCBI chr14:1,073,410...1,089,764 JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO MGI:4377985 (PMID:26284655) RGD PMID:26284655 NCBI chr 3:109,007,658...109,072,904 JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028769.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) RGD PMID:30952800 PMID:31271352 NCBI chr 1:203,542,559...203,562,242 JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:33372336 RGD:407571673 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) RGD PMID:21072319 NCBI chr 2:198,777,323...198,856,497 JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:16,223,367...16,264,261 JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) RGD PMID:33783314 NCBI chr 6:121,882,565...121,884,500 JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr17:86,405,080...86,576,597 JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr10:83,202,379...83,231,292 JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr 7:64,905,322...64,920,380 JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
IEA
IBA
(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
RGD
GO_Central
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154 JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25495476)
GO_REF:0000107
GO_Central
RGD
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930 JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA
(PMID:24056301)
GO_REF:0000107
RGD
Ensembl
PMID:24056301 GO_REF:0000107 NCBI chr13:33,140,834...33,176,997 JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA
(PMID:21068542)
GO_REF:0000107
RGD
Ensembl
PMID:21068542 GO_REF:0000107 NCBI chr 2:236,411,194...236,445,225 JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) RGD PMID:29437695 NCBI chr 2:45,232,325...45,258,345 JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 5:74,683,902...74,813,013 JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA
(PMID:32513819), (PMID:33468622)
GO_REF:0000033
RGD
GO_Central
PMID:32513819 PMID:33468622 GO_REF:0000033 NCBI chr11:80,965,965...81,023,234 JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 2:205,843,164...205,927,737 JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,511,492...51,537,746 JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS
IEA
(PMID:31271352)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) RGD PMID:31271352 NCBI chr10:95,042,451...95,079,679 JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:33372336 RGD:407571673 NCBI chr12:2,640,936...2,684,787 JBrowse link
positive regulation of lysosomal membrane permeability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein family A (Hsp70) member 8 IMP RGD PMID:9038169 RGD:10059368 NCBI chr 8:50,080,514...50,084,376 JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (PMID:19787053) RGD PMID:19787053 NCBI chr 5:143,087,759...143,109,807 JBrowse link
positive regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grn granulin precursor involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:28073925)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28073925 GO_REF:0000024 GO_REF:0000107 NCBI chr10:87,387,672...87,393,777 JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:32753672) RGD PMID:32753672 NCBI chr10:33,233,513...33,241,594 JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 involved_in ISO (PMID:25720963) RGD PMID:25720963 NCBI chr12:1,560,341...1,574,252 JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in ISO (PMID:25720963), (PMID:32753672) RGD PMID:25720963 PMID:32753672 NCBI chr15:3,809,182...3,854,204 JBrowse link
positive regulation of vacuole organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO (PMID:25139904) RGD PMID:25139904 NCBI chr 8:78,986,252...79,022,638 JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IBA
(PMID:21072319)
GO_REF:0000033
RGD
GO_Central
PMID:21072319 GO_REF:0000033 NCBI chr 2:198,777,323...198,856,497 JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr 9:95,869,839...95,905,354 JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:28389568) RGD PMID:28389568 NCBI chr10:33,233,513...33,241,594 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr12:17,024,876...17,053,306 JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO
ISS
(PMID:33773106)
GO_REF:0000024
RGD
UniProt
PMID:33773106 GO_REF:0000024 NCBI chr 1:159,974,255...159,980,398 JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:77,647,069...77,681,028 JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO PR:Q80W47 (PMID:24954904) RGD PMID:24954904 NCBI chr 9:95,869,839...95,905,354 JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA
(PMID:33773106)
GO_REF:0000107
RGD
Ensembl
PMID:33773106 GO_REF:0000107 NCBI chr 9:101,729,772...101,761,456 JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 8:19,807,733...19,817,321 JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:76,677,403...76,688,050 JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832 JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:173,919,330...174,500,536 JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23455425)
GO_REF:0000107
RGD
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chr 5:158,304,285...158,335,502 JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:132,096,992...132,156,702 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:24098492)
Ensembl
RGD
PMID:24098492 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546 JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 5:62,446,138...62,506,108 JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within
ISO
IBA
ISS
(PMID:28561066)
PR:Q8C0J2 (PMID:24954904)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:24954904 PMID:28561066 GO_REF:0000024 GO_REF:0000033 NCBI chr12:17,024,876...17,053,306 JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr12:51,448,838...51,481,159 JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_positive_effect
IEA
ISO
GO_REF:0000107
(PMID:33280498)
Ensembl
RGD
PMID:33280498 GO_REF:0000107 NCBI chr  X:64,257,351...64,270,158 JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_positive_effect ISO (PMID:33280498) RGD PMID:33280498 NCBI chr 5:154,179,065...154,360,459 JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (PMID:24089209) RGD PMID:24089209 NCBI chr10:63,930,629...63,936,174 JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) RGD PMID:24089209 NCBI chr15:31,573,325...31,666,068 JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:25578879)
Ensembl
RGD
PMID:25578879 GO_REF:0000107 NCBI chr14:83,564,065...83,684,573 JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA
(PMID:23524951)
GO_REF:0000107
RGD
Ensembl
PMID:23524951 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438 JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 9:74,057,488...74,151,610 JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:202,405,759...202,413,850 JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS
(PMID:27334615)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434 JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) RGD PMID:33280498 NCBI chr 5:151,210,492...151,211,716 JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO MGI:3775796 (PMID:23093945) RGD PMID:23093945 NCBI chr20:4,145,539...4,147,985 JBrowse link
G Tbc1d12 TBC1 domain family, member 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:246,015,985...246,098,241 JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in ISO
IBA
IEA
(PMID:22613832)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:22613832 GO_REF:0000033 GO_REF:0000107 NCBI chr14:74,172,652...74,272,182 JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr  X:17,853,086...17,856,505 JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in IMP
IBA
ISO
GO_REF:0000033
(PMID:22186024)
GO_Central
RGD
PMID:22186024 PMID:22186024 GO_REF:0000033, RGD:13442482 NCBI chr 5:153,292,722...153,312,143 JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:25878248) RGD PMID:25878248 NCBI chr 1:181,156,071...181,169,458 JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISS
ISO
GO_REF:0000024
(PMID:32492081)
UniProt
RGD
PMID:32492081 GO_REF:0000024 NCBI chr 5:154,073,372...154,106,246 JBrowse link
regulation of lysosomal lumen pH term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:22012985) RGD PMID:22012985 NCBI chr 7:124,706,246...124,867,234 JBrowse link
G Spns1 SPNS lysolipid transporter 1, lysophospholipid involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:36161949)
Ensembl
RGD
PMID:36161949 GO_REF:0000107 NCBI chr 1:180,942,088...180,949,415 JBrowse link
G Tasl TLR adaptor interacting with endolysosomal SLC15A4 involved_in ISO
IBA
(PMID:31001245)
GO_REF:0000033
RGD
GO_Central
PMID:31001245 GO_REF:0000033 NCBI chr  X:50,403,962...50,423,141 JBrowse link
G Tmem165 transmembrane protein 165 involved_in ISO
ISS
(PMID:23569283)
GO_REF:0000024
RGD
UniProt
PMID:23569283 GO_REF:0000024 NCBI chr14:31,993,489...32,018,717 JBrowse link
G Tmem175 transmembrane protein 175 involved_in ISS
ISO
GO_REF:0000024
(PMID:26317472)
(PMID:35750034)
UniProt
RGD
PMID:26317472 PMID:35750034 GO_REF:0000024 NCBI chr14:1,073,410...1,089,764 JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO
IEA
ISS
(PMID:28013294)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28013294 GO_REF:0000024 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399 JBrowse link
regulation of lysosomal membrane permeability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Laptm4b lysosomal protein transmembrane 4 beta involved_in ISO
IEA
ISS
(PMID:26280656)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26280656 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:65,434,525...65,477,386 JBrowse link
regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grn granulin precursor acts_upstream_of_or_within ISO MGI:3762618 (PMID:28728022) RGD PMID:28728022 NCBI chr10:87,387,672...87,393,777 JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta involved_in ISO
IEA
ISS
(PMID:26280656)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26280656 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:65,434,525...65,477,386 JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
ISS
(PMID:22692423)
GO_REF:0000024
RGD
UniProt
PMID:22692423 GO_REF:0000024 NCBI chr 5:164,167,985...164,277,438 JBrowse link
G Tfeb transcription factor EB involved_in ISO (PMID:22692423), (PMID:35662396) RGD PMID:22692423 PMID:35662396 NCBI chr 9:20,696,440...20,752,265 JBrowse link
G Tmem106b transmembrane protein 106B acts_upstream_of_or_within ISO MGI:5319917 (PMID:28728022) RGD PMID:28728022 NCBI chr 4:41,328,125...41,347,315 JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (PMID:23160154) RGD PMID:23160154 NCBI chr 8:118,585,082...118,586,382 JBrowse link
regulation of vacuole organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtm1 myotubularin 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:14722070)
UniProt
RGD
PMID:14722070 GO_REF:0000024 NCBI chr 6:488,923...506,882 JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgq immunity-related GTPase Q involved_in ISO (PMID:39481378) RGD PMID:39481378 NCBI chr 1:80,123,925...80,131,881 JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520 JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO MGI:6356543 (PMID:20810658), (PMID:27358407) RGD PMID:20810658 PMID:27358407 NCBI chr14:15,470,452...15,473,857 JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,405,482...13,440,384 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      cellular component organization or biogenesis 7187
        cellular component organization 6903
          organelle organization 3691
            vacuole organization 234
              autophagosome organization + 136
              contractile vacuole organization 0
              lytic vacuole organization + 92
              notochord cell vacuolation 0
              positive regulation of vacuole organization + 27
              protein storage vacuole organization 0
              regulation of vacuole organization + 60
              vacuole fusion + 0
              vacuole inheritance 0
paths to the root