ONTOLOGY REPORT - ANNOTATIONS |
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Term: | vacuole organization |
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Accession: | GO:0007033
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browse the term
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Definition: | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole. |
Synonyms: | exact_synonym: | vacuole organisation |
| narrow_synonym: | vacuolar assembly |
| related_synonym: | vacuole biogenesis; vacuole organization and biogenesis |
| alt_id: | GO:0044086 |
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Atf2 |
activating transcription factor 2 |
involved_in |
ISO |
MGI:3720850 (MGI:5007596|PMID:21533046) |
RGD |
PMID:21533046 |
MGI:5007596 |
NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
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B4galnt1 |
beta-1,4-N-acetyl-galactosaminyl transferase 1 |
acts_upstream_of_or_within |
ISO |
MGI:1351641 (MGI:5439233|PMID:22867887) |
RGD |
PMID:22867887 |
MGI:5439233 |
NCBI chr 7:62,988,429...62,996,190
Ensembl chr 7:62,988,930...62,996,190
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Ext1 |
exostosin glycosyltransferase 1 |
acts_upstream_of_or_within |
ISO |
(MGI:4360160|PMID:18480751) |
RGD |
PMID:18480751 |
MGI:4360160 |
NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
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Fig4 |
FIG4 phosphoinositide 5-phosphatase |
acts_upstream_of_or_within |
ISO |
MGI:3716838 (MGI:3715385|PMID:17572665) |
RGD |
PMID:17572665 |
MGI:3715385 |
NCBI chr20:44,600,603...44,724,047
Ensembl chr20:44,600,603...44,723,844
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Man2a1 |
mannosidase, alpha, class 2A, member 1 |
acts_upstream_of_or_within |
ISO |
MGI:2150656 (MGI:3652665|PMID:16754854) |
RGD |
PMID:16754854 |
MGI:3652665 |
NCBI chr 9:104,252,001...104,408,349
Ensembl chr 9:104,252,001...104,408,349
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Naglu |
N-acetyl-alpha-glucosaminidase |
acts_upstream_of_or_within |
ISO |
MGI:1342057|MGI:1934018 (MGI:4950812|PMID:21408219), (MGI:5439233|PMID:22867887) MGI:1342057|MGI:1934018 (MGI:4950812|PMID:21408219), (MGI:5439233|PMID:22867887), (MGI:5819191|PMID:26147524), (MGI:6219748|PMID:26607664) |
RGD |
PMID:21408219 PMID:22867887 PMID:26147524 PMID:26607664 |
MGI:4950812 MGI:5439233 MGI:5819191 MGI:6219748 |
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
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Npr2 |
natriuretic peptide receptor 2 |
involved_in |
ISO |
MGI:3774275 (MGI:5574108|PMID:25012822) |
RGD |
PMID:25012822 |
MGI:5574108 |
NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580
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Vps11 |
VPS11 core subunit of CORVET and HOPS complexes |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 8:44,683,768...44,698,572
Ensembl chr 8:44,684,127...44,698,568
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Vps18 |
VPS18 core subunit of CORVET and HOPS complexes |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 3:106,279,444...106,290,298
Ensembl chr 3:106,279,425...106,291,964
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Vps4a |
vacuolar protein sorting 4 homolog A |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr19:34,934,999...34,948,267
Ensembl chr19:34,934,961...34,948,887
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Vps54 |
VPS54 subunit of GARP complex |
involved_in |
ISO IEA |
MGI:1857091 (MGI:3622894|PMID:11403940) GO_REF:0000107 |
RGD Ensembl |
PMID:11403940 |
GO_REF:0000107 MGI:3622894 |
NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857
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Ambra1 |
autophagy and beclin 1 regulator 1 |
involved_in |
ISO |
(PMID:20921139), (PMID:25215947) |
RGD |
PMID:20921139 PMID:25215947 |
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NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
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Ap4m1 |
adaptor related protein complex 4 subunit mu 1 |
involved_in |
ISO ISS |
(PMID:29180427) GO_REF:0000024 |
RGD UniProt |
PMID:29180427 |
GO_REF:0000024 |
NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026
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Arsg |
arylsulfatase G |
involved_in |
IEA |
GO_REF:0000107 |
Ensembl |
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GO_REF:0000107 |
NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941
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Atg101 |
autophagy related 101 |
involved_in |
ISO IBA |
(PMID:19225151), (PMID:19597335) PMID:21873635 (MGI:6810791|PMID:19225151) |
RGD |
PMID:19225151 PMID:19597335 PMID:21873635 |
MGI:6810791, RGD:13792537 |
NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633
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Atg12 |
autophagy related 12 |
involved_in |
IBA IEA ISO |
PMID:21873635 GO_REF:0000002 (MGI:2137756|PMID:11266458) |
InterPro RGD |
PMID:11266458 PMID:21873635 |
GO_REF:0000002 MGI:2137756, RGD:13792537 |
NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
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Atg13 |
autophagy related 13 |
acts_upstream_of_or_within involved_in |
ISO |
(PMID:19211835) (MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151) (PMID:19211835), (PMID:19225151) |
RGD |
PMID:19211835 PMID:19225151 PMID:19258318 |
MGI:3849242 MGI:6810791 |
NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
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Atg14 |
autophagy related 14 |
involved_in |
IBA ISO |
PMID:21873635 (PMID:19270696) |
RGD |
PMID:19270696 PMID:21873635 |
RGD:13792537 |
NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
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Atg16l1 |
autophagy related 16-like 1 |
involved_in |
IBA ISO |
PMID:21873635 (MGI:2137756|PMID:11266458) |
RGD |
PMID:11266458 PMID:21873635 |
MGI:2137756, RGD:13792537 |
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
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Atg16l2 |
autophagy related 16-like 2 |
involved_in NOT|involved_in |
IBA ISO |
PMID:21873635 (MGI:2137756|PMID:11266458) (MGI:6436405|PMID:22082872) |
RGD |
PMID:11266458 PMID:22082872 PMID:21873635 |
MGI:2137756 MGI:6436405, RGD:13792537 |
NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420
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Atg2a |
autophagy related 2A |
involved_in |
ISO IBA |
(PMID:28561066) PMID:21873635 |
RGD |
PMID:28561066 PMID:21873635 |
RGD:13792537 |
NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
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Atg2b |
autophagy related 2B |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
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Atg3 |
autophagy related 3 |
involved_in acts_upstream_of_or_within |
IBA ISO ISS |
PMID:21873635 (MGI:4835103|PMID:20723759) (MGI:4880808|PMID:21220506) GO_REF:0000024 |
RGD UniProt |
PMID:20723759 PMID:21220506 PMID:21873635 |
GO_REF:0000024 MGI:4835103 MGI:4880808, RGD:13792537 |
NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
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Atg4b |
autophagy related 4B, cysteine peptidase |
involved_in |
ISO |
(MGI:5630037|PMID:25578879) |
RGD |
PMID:25578879 |
MGI:5630037 |
NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
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Atg5 |
autophagy related 5 |
involved_in acts_upstream_of_or_within |
IMP ISO IBA |
(MGI:2137756|PMID:11266458) (MGI:5500861|PMID:23704209) PMID:21873635 |
RGD |
PMID:11266458 PMID:23704209 PMID:16420522 PMID:21873635 |
MGI:2137756 MGI:5500861, RGD:1643189, RGD:13792537 |
NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
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Atg7 |
autophagy related 7 |
involved_in acts_upstream_of_or_within |
IBA ISO |
PMID:21873635 (MGI:5500861|PMID:23704209) (MGI:4420830|PMID:20080761) |
RGD |
PMID:20080761 PMID:23704209 PMID:21873635 |
MGI:4420830 MGI:5500861, RGD:13792537 |
NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
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Atg9a |
autophagy related 9A |
acts_upstream_of_or_within involved_in |
ISO ISS |
MGI:4417824 (MGI:5494547|PMID:22456507), (MGI:5509287|PMID:23402761) GO_REF:0000024 (PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622) (PMID:15755735), (PMID:22456507) |
RGD UniProt |
PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 PMID:32513819 PMID:33468622 More...
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GO_REF:0000024 MGI:5494547 MGI:5509287 |
NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
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Atg9b |
autophagy related 9B |
acts_upstream_of_or_within |
ISO |
(PMID:15755735) |
RGD |
PMID:15755735 |
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NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
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Atp2a2 |
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:28890335) |
UniProt RGD |
PMID:28890335 |
GO_REF:0000024 |
NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
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Bag3 |
BAG cochaperone 3 |
involved_in |
IMP |
PMID:23434281 |
ARUK-UCL |
PMID:23434281 |
RGD:12793031 |
NCBI chr 1:183,103,038...183,126,862
Ensembl chr 1:183,102,871...183,126,858
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Becn1 |
beclin 1 |
involved_in |
IMP ISO ISS IBA |
(MGI:5619439|PMID:23332761) GO_REF:0000024 PMID:21873635 |
RGD UniProt |
PMID:23332761 PMID:16420522 PMID:21873635 |
GO_REF:0000024 MGI:5619439, RGD:1643189, RGD:13792537 |
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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Becn2 |
beclin 2 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr13:87,843,528...87,892,343
Ensembl chr13:87,844,531...87,845,787
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Ctsd |
cathepsin D |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3057045|PMID:15452145) GO_REF:0000107 |
RGD Ensembl |
PMID:15452145 |
GO_REF:0000107 MGI:3057045 |
NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488
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Elapor1 |
endosome-lysosome associated apoptosis and autophagy regulator 1 |
involved_in |
IBA ISO |
PMID:21873635 (PMID:21072319) |
RGD |
PMID:21072319 PMID:21873635 |
RGD:13792537 |
NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
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Emc6 |
ER membrane protein complex subunit 6 |
involved_in |
ISO IBA |
(PMID:23182941) PMID:21873635 |
RGD |
PMID:23182941 PMID:21873635 |
RGD:13792537 |
NCBI chr10:57,794,072...57,795,671
Ensembl chr10:57,793,685...57,796,217
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Epm2a |
EPM2A glucan phosphatase, laforin |
acts_upstream_of_or_within |
ISO |
MGI:2182627 (MGI:5913112|PMID:24430976) |
RGD |
PMID:24430976 |
MGI:5913112 |
NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
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Gabarap |
GABA type A receptor-associated protein |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr10:54,714,834...54,717,769
Ensembl chr10:54,714,198...54,717,765
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Gabarapl1 |
GABA type A receptor associated protein like 1 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450
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Gabarapl2 |
GABA type A receptor associated protein like 2 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr19:39,910,572...39,921,408
Ensembl chr19:39,910,534...39,924,628
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Gabarapl3 |
GABA type A receptor associated protein like 3 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139
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Irgm |
immunity-related GTPase M |
involved_in |
ISO |
(PMID:16888103) (MGI:3656111|PMID:16888103) |
RGD |
PMID:16888103 |
MGI:3656111 |
NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
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LOC120098596 |
gamma-aminobutyric acid receptor-associated protein-like 2 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109
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Map1lc3a |
microtubule-associated protein 1 light chain 3 alpha |
involved_in |
ISO IDA IBA |
(PMID:24290141) PMID:11060023 PMID:21873635 |
RGD |
PMID:24290141 PMID:11060023 PMID:21873635 |
RGD:8554284, RGD:13792537 |
NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
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Map1lc3b |
microtubule-associated protein 1 light chain 3 beta |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
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Map1lc3b2 |
microtubule-associated protein 1 light chain 3 beta 2 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr16:70,993,893...70,994,586
Ensembl chr16:70,994,128...70,994,606
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Mtm1 |
myotubularin 1 |
acts_upstream_of |
ISO |
MGI:2450997 (MGI:5510937|PMID:23695157) |
RGD |
PMID:23695157 |
MGI:5510937 |
NCBI chr 6:488,691...506,964
Ensembl chr 6:488,969...506,860
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Nsfl1c |
NSFL1 cofactor |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 3:139,978,306...140,002,876
Ensembl chr 3:139,978,301...140,002,870
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Pacs2 |
phosphofurin acidic cluster sorting protein 2 |
acts_upstream_of_or_within |
ISO |
(PMID:23455425) |
RGD |
PMID:23455425 |
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NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583
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Pik3c3 |
phosphatidylinositol 3-kinase, catalytic subunit type 3 |
acts_upstream_of_or_within involved_in |
IMP ISO IBA |
(MGI:5565574|PMID:24098492) PMID:21873635 |
RGD |
PMID:24098492 PMID:12453151 PMID:21873635 |
MGI:5565574, RGD:2303129, RGD:13792537 |
NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
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Psen1 |
presenilin 1 |
acts_upstream_of_or_within |
ISO |
MGI:2149116 (MGI:3057045|PMID:15452145) |
RGD |
PMID:15452145 |
MGI:3057045 |
NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
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Rab19 |
RAB19, member RAS oncogene family |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 4:68,157,159...68,166,889
Ensembl chr 4:68,156,881...68,166,886
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Rab1a |
RAB1A, member RAS oncogene family |
involved_in |
ISO ISS IBA |
(PMID:22939626) GO_REF:0000024 PMID:21873635 |
RGD UniProt |
PMID:22939626 PMID:21873635 |
GO_REF:0000024, RGD:13792537 |
NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248
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Rab1b |
RAB1B, member RAS oncogene family |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
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Rab23 |
RAB23, member RAS oncogene family |
involved_in |
ISO IBA |
(PMID:22452336) PMID:21873635 |
RGD |
PMID:22452336 PMID:21873635 |
RGD:13792537 |
NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927
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Rab33b |
RAB33B, member RAS oncogene family |
involved_in |
ISO |
(MGI:5447922|PMID:18448665) |
RGD |
PMID:18448665 |
MGI:5447922 |
NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:135,528,116...135,538,719
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Rab43 |
RAB43, member RAS oncogene family |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 4:120,249,878...120,269,174
Ensembl chr 4:120,249,879...120,269,174
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Rab7a |
RAB7A, member RAS oncogene family |
involved_in |
ISO |
(PMID:19956673) |
RGD |
PMID:19956673 |
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NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
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Rb1cc1 |
RB1-inducible coiled-coil 1 |
involved_in |
IBA ISO |
PMID:21873635 (MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151) (PMID:19225151), (PMID:28890335) |
RGD |
PMID:19225151 PMID:19258318 PMID:28890335 PMID:21873635 |
MGI:3849242 MGI:6810791, RGD:13792537 |
NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
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Rufy4 |
RUN and FYVE domain containing 4 |
involved_in |
IBA ISO |
PMID:21873635 (PMID:26416964) |
RGD |
PMID:26416964 PMID:21873635 |
RGD:13792537 |
NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:75,703,750...75,723,525
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Sting1 |
stimulator of interferon response cGAMP interactor 1 |
involved_in |
ISO IBA ISS |
(PMID:30568238), (PMID:30842662) (MGI:6305034|PMID:30568238) PMID:21873635 GO_REF:0000024 |
RGD UniProt |
PMID:30568238 PMID:30842662 PMID:21873635 |
GO_REF:0000024 MGI:6305034, RGD:13792537 |
NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335
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G |
Stx12 |
syntaxin 12 |
involved_in |
ISO |
(PMID:24095276) |
RGD |
PMID:24095276 |
|
NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377
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G |
Synpo2 |
synaptopodin 2 |
involved_in |
IMP |
PMID:23434281 |
UniProt |
PMID:23434281 |
RGD:12793031 |
NCBI chr 2:211,217,099...211,371,267
Ensembl chr 2:211,216,783...211,371,267
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G |
Tcirg1 |
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 |
acts_upstream_of_or_within |
ISO |
(MGI:6296816|PMID:23908015) |
RGD |
PMID:23908015 |
MGI:6296816 |
NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
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G |
Tmem41b |
transmembrane protein 41B |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:30093494), (PMID:30126924), (PMID:30933966) |
UniProt RGD |
PMID:30093494 PMID:30126924 PMID:30933966 |
GO_REF:0000024 |
NCBI chr 1:164,012,585...164,026,967
Ensembl chr 1:164,012,592...164,026,933
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G |
Tp53inp1 |
tumor protein p53 inducible nuclear protein 1 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968
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G |
Tp53inp2 |
tumor protein p53 inducible nuclear protein 2 |
involved_in |
ISO IEA ISS IBA |
(PMID:19056683) GO_REF:0000107 GO_REF:0000024 PMID:21873635 |
RGD Ensembl UniProt |
PMID:19056683 PMID:21873635 |
GO_REF:0000024 GO_REF:0000107, RGD:13792537 |
NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
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G |
Ubqln1 |
ubiquilin 1 |
involved_in |
IBA IEA ISO |
PMID:21873635 GO_REF:0000107 (PMID:20529957) |
Ensembl RGD |
PMID:20529957 PMID:21873635 |
GO_REF:0000107, RGD:13792537 |
NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090
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G |
Ubqln2 |
ubiquilin 2 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr X:17,853,086...17,856,505
Ensembl chr X:17,853,114...17,856,505
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G |
Ubxn2a |
UBX domain protein 2A |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 6:27,884,253...27,912,709
Ensembl chr 6:27,884,680...27,912,649
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G |
Ubxn2b |
UBX domain protein 2B |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 5:19,303,634...19,333,181
Ensembl chr 5:19,303,682...19,326,849
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G |
Ulk1 |
unc-51 like autophagy activating kinase 1 |
involved_in |
IBA ISO |
PMID:21873635 (MGI:3849242|PMID:19258318), (MGI:6810791|PMID:19225151) (PMID:19225151), (PMID:28890335) |
RGD |
PMID:19225151 PMID:19258318 PMID:28890335 PMID:21873635 |
MGI:3849242 MGI:6810791, RGD:13792537 |
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
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G |
Ulk2 |
unc-51 like autophagy activating kinase 2 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407
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G |
Vmp1 |
vacuole membrane protein 1 |
involved_in |
ISO ISS |
(PMID:28890335), (PMID:30093494), (PMID:30933966) GO_REF:0000024 |
RGD UniProt |
PMID:28890335 PMID:30093494 PMID:30933966 |
GO_REF:0000024 |
NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007
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G |
Wdr45 |
WD repeat domain 45 |
involved_in |
ISO IEA ISS |
(PMID:28561066) GO_REF:0000107 GO_REF:0000024 |
RGD Ensembl UniProt |
PMID:28561066 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr X:14,776,280...14,782,197
Ensembl chr X:14,776,293...14,782,202
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|
G |
Wdr45b |
WD repeat domain 45B |
involved_in |
ISO |
(PMID:28561066) |
RGD |
PMID:28561066 |
|
NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
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G |
Wipi1 |
WD repeat domain, phosphoinositide interacting 1 |
involved_in |
ISO |
(PMID:28561066) |
RGD |
PMID:28561066 |
|
NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
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G |
Wipi2 |
WD repeat domain, phosphoinositide interacting 2 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:20505359), (PMID:28561066), (PMID:28890335) |
UniProt RGD |
PMID:20505359 PMID:28561066 PMID:28890335 |
GO_REF:0000024 |
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
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|
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G |
Atp13a2 |
ATPase cation transporting 13A2 |
involved_in |
ISO |
(PMID:22186024) |
RGD |
PMID:22186024 |
|
NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139
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G |
Gba |
glucosylceramidase beta |
involved_in |
ISO |
(MGI:5501380|PMID:23707074) |
RGD |
PMID:23707074 |
MGI:5501380 |
NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263
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|
G |
Pik3c2a |
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha |
acts_upstream_of_or_within |
ISO |
MGI:2685045 (MGI:5565574|PMID:24098492) |
RGD |
PMID:24098492 |
MGI:5565574 |
NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:170,577,942...170,683,472
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G |
Pik3c2b |
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta |
acts_upstream_of_or_within |
ISO |
MGI:1203729 (MGI:5565574|PMID:24098492) |
RGD |
PMID:24098492 |
MGI:5565574 |
NCBI chr13:44,494,673...44,555,663
Ensembl chr13:44,495,050...44,555,612
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G |
Spg11 |
SPG11 vesicle trafficking associated, spatacsin |
acts_upstream_of_or_within |
ISO |
(PMID:25365221) |
RGD |
PMID:25365221 |
|
NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:109,008,135...109,072,911
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G |
Ulk3 |
unc-51 like kinase 3 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:57,992,723...57,999,467
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|
G |
Zfyve26 |
zinc finger FYVE-type containing 26 |
acts_upstream_of_or_within |
ISO |
(PMID:25365221) |
RGD |
PMID:25365221 |
|
NCBI chr 6:98,031,874...98,095,538
Ensembl chr 6:98,032,520...98,095,480
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|
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G |
Smurf1 |
SMAD specific E3 ubiquitin protein ligase 1 |
involved_in |
ISO |
(PMID:22020285) |
RGD |
PMID:22020285 |
|
NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
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|
|
G |
Atp6ap2 |
ATPase H+ transporting accessory protein 2 |
involved_in |
ISO ISS |
(PMID:32276428) GO_REF:0000024 |
RGD UniProt |
PMID:32276428 |
GO_REF:0000024 |
NCBI chr X:10,183,983...10,210,948
Ensembl chr X:10,183,068...10,210,918
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|
G |
Ccdc115 |
coiled-coil domain containing 115 |
involved_in |
ISO |
(PMID:28296633) |
RGD |
PMID:28296633 |
|
NCBI chr 9:36,650,384...36,654,348
Ensembl chr 9:36,649,271...36,653,946
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|
G |
Cln3 |
CLN3 lysosomal/endosomal transmembrane protein, battenin |
involved_in |
ISO IBA |
(PMID:11722572) PMID:21873635 |
RGD |
PMID:11722572 PMID:21873635 |
RGD:13792537 |
NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
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G |
Cln5 |
CLN5, intracellular trafficking protein |
involved_in |
ISO |
(PMID:11722572) |
RGD |
PMID:11722572 |
|
NCBI chr15:79,893,573...79,903,438
Ensembl chr15:79,893,548...79,903,438
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G |
Cln6 |
CLN6, transmembrane ER protein |
involved_in |
ISO |
(PMID:11722572) |
RGD |
PMID:11722572 |
|
NCBI chr 8:63,303,356...63,318,360
Ensembl chr 8:63,303,029...63,318,360
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G |
Creg1 |
cellular repressor of E1A-stimulated genes 1 |
acts_upstream_of_or_within |
ISO |
(MGI:6854654|PMID:33966596) |
RGD |
PMID:33966596 |
MGI:6854654 |
NCBI chr13:78,019,814...78,032,310
Ensembl chr13:78,019,843...78,032,308
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|
G |
Grn |
granulin precursor |
involved_in |
ISS IEA ISO |
GO_REF:0000024 GO_REF:0000107 (PMID:28073925) |
UniProt Ensembl RGD |
PMID:28073925 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775
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|
G |
Ppt1 |
palmitoyl-protein thioesterase 1 |
involved_in |
ISO ISS |
(PMID:11722572) PMID:8895569 |
RGD |
PMID:11722572 PMID:8895569 |
RGD:8553248 |
NCBI chr 5:135,121,176...135,141,076
Ensembl chr 5:135,121,163...135,142,048
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|
G |
Snapin |
SNAP-associated protein |
acts_upstream_of_or_within |
ISO |
MGI:3608768 (MGI:4879078|PMID:20920792) |
RGD |
PMID:20920792 |
MGI:4879078 |
NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
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|
G |
Tmem106b |
transmembrane protein 106B |
acts_upstream_of_or_within |
ISO |
MGI:5319917 (MGI:6101836|PMID:28728022) |
RGD |
PMID:28728022 |
MGI:6101836 |
NCBI chr 4:41,328,125...41,347,315
Ensembl chr 4:41,327,994...41,345,619
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|
G |
Tmem199 |
transmembrane protein 199 |
involved_in |
ISO ISS |
(PMID:28296633) GO_REF:0000024 |
RGD UniProt |
PMID:28296633 |
GO_REF:0000024 |
NCBI chr10:63,402,493...63,407,065
Ensembl chr10:63,402,494...63,407,108
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G |
Tmem9 |
transmembrane protein 9 |
involved_in |
ISO |
(PMID:30374053) |
RGD |
PMID:30374053 |
|
NCBI chr13:47,458,486...47,475,832
Ensembl chr13:47,458,498...47,475,832
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|
|
G |
Cln3 |
CLN3 lysosomal/endosomal transmembrane protein, battenin |
involved_in |
ISO |
(PMID:10924275) |
RGD |
PMID:10924275 |
|
NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
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|
G |
Oca2 |
OCA2 melanosomal transmembrane protein |
involved_in |
ISO |
(PMID:25513726), (PMID:32966160) |
RGD |
PMID:25513726 PMID:32966160 |
|
NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074
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|
G |
Slc45a2 |
solute carrier family 45, member 2 |
involved_in |
ISO |
(PMID:32966160) (MGI:7338895|PMID:35469906) |
RGD |
PMID:32966160 PMID:35469906 |
MGI:7338895 |
NCBI chr 2:59,963,599...59,996,408
Ensembl chr 2:59,963,706...59,996,317
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|
G |
Tmem175 |
transmembrane protein 175 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:35333573), (PMID:35750034) |
UniProt RGD |
PMID:35333573 PMID:35750034 |
GO_REF:0000024 |
NCBI chr14:1,073,410...1,089,764
Ensembl chr14:1,073,523...1,089,819
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|
|
G |
Arf1 |
ADP-ribosylation factor 1 |
|
IDA |
|
RGD |
PMID:9538255 |
RGD:9684948 |
NCBI chr10:43,997,983...44,014,543
Ensembl chr10:43,997,986...44,014,434
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|
G |
Atp10b |
ATPase phospholipid transporting 10B (putative) |
involved_in |
ISO |
(PMID:32172343) |
RGD |
PMID:32172343 |
|
NCBI chr10:27,495,207...27,751,313
Ensembl chr10:27,408,747...27,749,637
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|
|
G |
AABR07008608.1 |
|
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
Ensembl chr 2:65,893,758...65,896,044
|
|
G |
Abca1 |
ATP binding cassette subfamily A member 1 |
involved_in |
ISO |
(PMID:15163665) |
RGD |
PMID:15163665 |
|
NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
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|
G |
Acp2 |
acid phosphatase 2, lysosomal |
involved_in acts_upstream_of_or_within |
IBA ISO |
PMID:21873635 MGI:2180084|MGI:3574793 (MGI:3522374|PMID:15604265), (MGI:894905|PMID:9228031) |
RGD |
PMID:9228031 PMID:15604265 PMID:21873635 |
MGI:3522374 MGI:894905, RGD:13792537 |
NCBI chr 3:77,175,022...77,185,180
Ensembl chr 3:77,175,895...77,185,680
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|
G |
Acp3 |
acid phosphatase 3 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 8:104,905,570...104,956,146
Ensembl chr 8:104,905,586...104,954,236
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|
G |
Acp4 |
acid phosphatase 4 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 1:94,736,376...94,751,871
Ensembl chr 1:94,735,514...94,744,623
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|
G |
Aktip |
AKT interacting protein |
involved_in |
ISO ISS |
(PMID:18799622) GO_REF:0000024 |
RGD UniProt |
PMID:18799622 |
GO_REF:0000024 |
NCBI chr19:15,866,811...15,877,123
Ensembl chr19:15,866,928...15,886,663
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|
G |
Ap3b1 |
adaptor related protein complex 3 subunit beta 1 |
acts_upstream_of_or_within |
ISO |
(MGI:1330543|PMID:9931340), (MGI:6415001|PMID:30786955) |
RGD |
PMID:9931340 PMID:30786955 |
MGI:1330543 MGI:6415001 |
NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
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|
G |
Becn1 |
beclin 1 |
acts_upstream_of_or_within |
ISO |
MGI:2683696 (MGI:3801567|PMID:18497889) |
RGD |
PMID:18497889 |
MGI:3801567 |
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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|
G |
Chmp5 |
charged multivesicular body protein 5 |
acts_upstream_of_or_within |
ISO |
MGI:3626293 (MGI:3622513|PMID:16567502) |
RGD |
PMID:16567502 |
MGI:3622513 |
NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529
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|
G |
Cln3 |
CLN3 lysosomal/endosomal transmembrane protein, battenin |
acts_upstream_of_or_within involved_in |
ISO IBA |
MGI:1933976|MGI:2388887|MGI:3623134 (MGI:1337525|PMID:10191119), (MGI:1343910|PMID:10440905), (MGI:1346962|PMID:10527801), (MGI:3527911|PMID:15588329) PMID:21873635 |
RGD |
PMID:10191119 PMID:10440905 PMID:10527801 PMID:15588329 PMID:21873635 |
MGI:1337525 MGI:1343910 MGI:1346962 MGI:3527911, RGD:13792537 |
NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
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|
G |
Cln5 |
CLN5, intracellular trafficking protein |
acts_upstream_of_or_within involved_in |
ISO IBA |
MGI:3521802 (MGI:3512689|PMID:15459177) PMID:21873635 |
RGD |
PMID:15459177 PMID:21873635 |
MGI:3512689, RGD:13792537 |
NCBI chr15:79,893,573...79,903,438
Ensembl chr15:79,893,548...79,903,438
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|
G |
Cln6 |
CLN6, transmembrane ER protein |
involved_in acts_upstream_of_or_within |
IBA ISO |
PMID:21873635 MGI:2159328 (MGI:1203267|PMID:9600738), (MGI:5751614|PMID:26681805) |
RGD |
PMID:9600738 PMID:26681805 PMID:21873635 |
MGI:1203267 MGI:5751614, RGD:13792537 |
NCBI chr 8:63,303,356...63,318,360
Ensembl chr 8:63,303,029...63,318,360
|
|
G |
Cln8 |
CLN8, transmembrane ER and ERGIC protein |
acts_upstream_of_or_within |
ISO |
MGI:1856959 (MGI:1333651|PMID:10087069), (MGI:65559|PMID:8144516), (MGI:66707|PMID:8160780), (MGI:71226|PMID:7613514) |
RGD |
PMID:7613514 PMID:8144516 PMID:8160780 PMID:10087069 |
MGI:1333651 MGI:65559 MGI:66707 MGI:71226 |
NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
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|
G |
Clvs1 |
clavesin 1 |
involved_in |
IBA IMP |
PMID:21873635 PMID:19651769 |
GO_Central UniProt |
PMID:21873635 PMID:19651769 |
RGD:13792537, RGD:8553526 |
NCBI chr 5:22,408,384...22,604,281
Ensembl chr 5:22,408,384...22,604,270
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|
G |
Clvs2 |
clavesin 2 |
involved_in |
IMP IBA |
PMID:19651769 PMID:21873635 |
UniProt GO_Central |
PMID:19651769 PMID:21873635 |
RGD:8553526, RGD:13792537 |
NCBI chr 1:23,735,272...23,762,997
Ensembl chr 1:23,735,272...23,842,692
|
|
G |
Creg1 |
cellular repressor of E1A-stimulated genes 1 |
acts_upstream_of_or_within |
ISO |
(MGI:6854654|PMID:33966596) |
RGD |
PMID:33966596 |
MGI:6854654 |
NCBI chr13:78,019,814...78,032,310
Ensembl chr13:78,019,843...78,032,308
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|
G |
Fhip1b |
FHF complex subunit HOOK interacting protein 1B |
involved_in |
ISS IBA ISO |
GO_REF:0000024 PMID:21873635 (PMID:18799622) |
UniProt RGD |
PMID:18799622 PMID:21873635 |
GO_REF:0000024, RGD:13792537 |
NCBI chr 1:159,718,679...159,748,449
Ensembl chr 1:159,726,004...159,748,408
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|
G |
Gaa |
alpha glucosidase |
involved_in acts_upstream_of_or_within |
IEA ISO IBA |
GO_REF:0000107 MGI:2148550|MGI:2179961 (MGI:1195358|PMID:9384603), (MGI:1275872|PMID:9668092), (MGI:1346721|PMID:10547605), (MGI:2136118|PMID:11328962), (MGI:3618942|PMID:15169761), (MGI:3664400|PMID:12115977) PMID:21873635 (PMID:7717400) |
Ensembl RGD |
PMID:7717400 PMID:9384603 PMID:9668092 PMID:10547605 PMID:11328962 PMID:12115977 PMID:15169761 PMID:21873635 More...
|
GO_REF:0000107 MGI:1195358 MGI:1275872 MGI:1346721 MGI:2136118 MGI:3618942 MGI:3664400, RGD:13792537 |
NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836
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G |
Gba |
glucosylceramidase beta |
involved_in |
ISO |
(PMID:27378698) (MGI:5817293|PMID:27378698) |
RGD |
PMID:27378698 |
MGI:5817293 |
NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263
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G |
Gnptab |
N-acetylglucosamine-1-phosphate transferase subunits alpha and beta |
involved_in |
ISO |
(PMID:21719679) |
RGD |
PMID:21719679 |
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NCBI chr 7:22,800,502...22,866,336
Ensembl chr 7:22,800,485...22,866,933
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G |
Grn |
granulin precursor |
involved_in |
ISO ISS |
(MGI:6274951|PMID:27789271) GO_REF:0000024 |
RGD UniProt |
PMID:27789271 |
GO_REF:0000024 MGI:6274951 |
NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775
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G |
Hexa |
hexosaminidase subunit alpha |
acts_upstream_of_or_within |
ISO |
MGI:1857181|MGI:2429698|MGI:3581540|MGI:96074 (MGI:1097747|PMID:9302266), (MGI:1271008|PMID:9645704), (MGI:1352198|PMID:10591619), (MGI:3033296|PMID:14972652), (MGI:69059|PMID:7937929), (MGI:77946|PMID:8747922), (MGI:83770|PMID:8896570), (MGI:86923|PMID:9103204), (MGI:894634|PMID:9184660) |
RGD |
PMID:7937929 PMID:8747922 PMID:8896570 PMID:9103204 PMID:9184660 PMID:9302266 PMID:9645704 PMID:10591619 PMID:14972652 More...
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MGI:1097747 MGI:1271008 MGI:1352198 MGI:3033296 MGI:69059 MGI:77946 MGI:83770 MGI:86923 MGI:894634 |
NCBI chr 8:59,936,526...59,961,654
Ensembl chr 8:59,936,660...59,962,013
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G |
Hexb |
hexosaminidase subunit beta |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:2429701|MGI:96073 (MGI:1271008|PMID:9645704), (MGI:78473|PMID:8789434), (MGI:83770|PMID:8896570), (MGI:894634|PMID:9184660) |
Ensembl RGD |
PMID:8789434 PMID:8896570 PMID:9184660 PMID:9645704 |
GO_REF:0000107 MGI:1271008 MGI:78473 MGI:83770 MGI:894634 |
NCBI chr 2:28,483,997...28,504,165
Ensembl chr 2:28,484,012...28,504,223
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G |
Hook1 |
hook microtubule-tethering protein 1 |
involved_in |
ISO |
(PMID:18799622) |
RGD |
PMID:18799622 |
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NCBI chr 5:110,824,501...110,887,791
Ensembl chr 5:110,824,501...110,887,787
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G |
Hook2 |
hook microtubule-tethering protein 2 |
involved_in |
ISO |
(PMID:18799622) |
RGD |
PMID:18799622 |
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NCBI chr19:23,151,869...23,170,139
Ensembl chr19:23,151,870...23,164,181
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G |
Hook3 |
hook microtubule-tethering protein 3 |
involved_in |
ISO |
(PMID:18799622) |
RGD |
PMID:18799622 |
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NCBI chr16:65,954,293...66,058,812
Ensembl chr16:65,954,350...66,061,338
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G |
Hps1 |
HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 |
acts_upstream_of_or_within |
ISO |
(MGI:6415001|PMID:30786955) |
RGD |
PMID:30786955 |
MGI:6415001 |
NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
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G |
Hps4 |
HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 |
involved_in |
ISO |
(PMID:12663659) |
RGD |
PMID:12663659 |
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NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
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G |
Hsd17b1 |
hydroxysteroid (17-beta) dehydrogenase 1 |
acts_upstream_of_or_within |
ISO |
MGI:3799948 (MGI:6110397|PMID:29180785) |
RGD |
PMID:29180785 |
MGI:6110397 |
NCBI chr10:86,009,728...86,011,928
Ensembl chr10:86,009,728...86,011,927
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G |
Idua |
alpha-L-iduronidase |
acts_upstream_of_or_within |
ISO |
MGI:2176236|MGI:4415188 (MGI:4414887|PMID:19751987), (MGI:86916|PMID:9097952) |
RGD |
PMID:9097952 PMID:19751987 |
MGI:4414887 MGI:86916 |
NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
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G |
Lamtor1 |
late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 |
involved_in |
ISS IEA ISO |
GO_REF:0000024 GO_REF:0000002 (MGI:4887551|PMID:19177150) |
UniProt InterPro RGD |
PMID:19177150 |
GO_REF:0000002 GO_REF:0000024 MGI:4887551 |
NCBI chr 1:156,272,116...156,277,687
Ensembl chr 1:156,272,064...156,291,179
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G |
Lipa |
lipase A, lysosomal acid type |
acts_upstream_of_or_within |
ISO |
(MGI:5752449|PMID:25807535) |
RGD |
PMID:25807535 |
MGI:5752449 |
NCBI chr 1:232,024,351...232,167,329
Ensembl chr 1:232,024,356...232,057,633
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G |
LOC100361543 |
RhoA activator C11orf59-like |
involved_in |
ISS IEA |
GO_REF:0000024 GO_REF:0000002 |
UniProt InterPro |
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GO_REF:0000002 GO_REF:0000024 |
NCBI chr X:34,637,461...34,638,516
Ensembl chr X:34,637,459...34,638,516
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G |
Lrrk2 |
leucine-rich repeat kinase 2 |
involved_in |
ISO |
(PMID:25416817) |
RGD |
PMID:25416817 |
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NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
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G |
Lyset |
lysosomal enzyme trafficking factor |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:36096887) |
UniProt RGD |
PMID:36096887 |
GO_REF:0000024 |
NCBI chr 6:121,884,554...121,886,710
Ensembl chr 6:121,884,643...121,886,275
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G |
Lyst |
lysosomal trafficking regulator |
acts_upstream_of_or_within |
ISO |
MGI:1855968|MGI:1855969 (MGI:1099544|PMID:9368050), (MGI:53816|PMID:4697831), (MGI:53992|PMID:1113502), (MGI:55104|PMID:6170520), (MGI:56449|PMID:4031470) |
RGD |
PMID:1113502 PMID:4031470 PMID:4697831 PMID:6170520 PMID:9368050 |
MGI:1099544 MGI:53816 MGI:53992 MGI:55104 MGI:56449 |
NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
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G |
Mbtps1 |
membrane-bound transcription factor peptidase, site 1 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:21719679) |
UniProt RGD |
PMID:21719679 |
GO_REF:0000024 |
NCBI chr19:47,561,598...47,612,769
Ensembl chr19:47,561,598...47,612,791
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G |
Mfsd8 |
major facilitator superfamily domain containing 8 |
acts_upstream_of_or_within |
ISO |
MGI:4456699 (MGI:5575728|PMID:24423645), (MGI:5751614|PMID:26681805) |
RGD |
PMID:24423645 PMID:26681805 |
MGI:5575728 MGI:5751614 |
NCBI chr 2:123,822,042...123,882,913
Ensembl chr 2:123,816,614...123,857,971
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G |
Mtor |
mechanistic target of rapamycin kinase |
involved_in |
ISO ISS |
(PMID:22692423) GO_REF:0000024 |
RGD UniProt |
PMID:22692423 |
GO_REF:0000024 |
NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
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G |
Myo7a |
myosin VIIA |
involved_in |
ISO |
(PMID:16001398) |
RGD |
PMID:16001398 |
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NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
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G |
Naglu |
N-acetyl-alpha-glucosaminidase |
acts_upstream_of_or_within |
ISO |
MGI:1934018 (MGI:3769195|PMID:17712420) MGI:1934018 (MGI:3769195|PMID:17712420), (MGI:4412159|PMID:19632871), (MGI:5621235|PMID:25524704), (MGI:6219748|PMID:26607664) |
RGD |
PMID:17712420 PMID:19632871 PMID:25524704 PMID:26607664 |
MGI:3769195 MGI:4412159 MGI:5621235 MGI:6219748 |
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
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G |
Pi4kb |
phosphatidylinositol 4-kinase beta |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 (PMID:25365221) |
Ensembl RGD |
PMID:25365221 |
GO_REF:0000107 |
NCBI chr 2:182,540,377...182,572,684
Ensembl chr 2:182,540,567...182,588,488
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G |
Ppt1 |
palmitoyl-protein thioesterase 1 |
acts_upstream_of_or_within |
ISO |
MGI:2176390|MGI:3527191 (MGI:3612221|PMID:16368712), (MGI:3654230|PMID:16542649) |
RGD |
PMID:16368712 PMID:16542649 |
MGI:3612221 MGI:3654230 |
NCBI chr 5:135,121,176...135,141,076
Ensembl chr 5:135,121,163...135,142,048
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G |
Snapin |
SNAP-associated protein |
involved_in acts_upstream_of_or_within |
IBA ISO |
PMID:21873635 MGI:3608768 (MGI:4879078|PMID:20920792) |
RGD |
PMID:20920792 PMID:21873635 |
MGI:4879078, RGD:13792537 |
NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
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G |
Spg11 |
SPG11 vesicle trafficking associated, spatacsin |
acts_upstream_of_or_within |
ISO |
MGI:4377985|MGI:6451766 (MGI:5749311|PMID:26284655), (MGI:6141536|PMID:28237315), (MGI:6433162|PMID:31637311) (PMID:25365221) |
RGD |
PMID:25365221 PMID:26284655 PMID:28237315 PMID:31637311 |
MGI:5749311 MGI:6141536 MGI:6433162 |
NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:109,008,135...109,072,911
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G |
Tfeb |
transcription factor EB |
involved_in acts_upstream_of_or_within |
ISO |
(PMID:22692423), (PMID:23434374) (PMID:22692423), (PMID:23434374), (PMID:35662396) (MGI:6433162|PMID:31637311) |
RGD |
PMID:22692423 PMID:23434374 PMID:31637311 PMID:35662396 |
MGI:6433162 |
NCBI chr 9:13,198,890...13,254,726
Ensembl chr 9:13,198,891...13,254,714
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G |
Tmem106b |
transmembrane protein 106B |
acts_upstream_of_or_within involved_in |
ISO IBA |
(MGI:5588048|PMID:25066864) PMID:21873635 |
RGD |
PMID:25066864 PMID:21873635 |
MGI:5588048, RGD:13792537 |
NCBI chr 4:41,328,125...41,347,315
Ensembl chr 4:41,327,994...41,345,619
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G |
Tpcn2 |
two pore segment channel 2 |
involved_in |
ISO |
UniProtKB:Q8NHX9 (PMID:25416817) |
RGD |
PMID:25416817 |
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NCBI chr 1:200,416,538...200,446,252
Ensembl chr 1:200,416,540...200,446,236
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G |
Tpp1 |
tripeptidyl peptidase 1 |
acts_upstream_of_or_within |
ISO |
MGI:3521972 (MGI:3522013|PMID:15483130) |
RGD |
PMID:15483130 |
MGI:3522013 |
NCBI chr 1:160,097,984...160,104,108
Ensembl chr 1:160,096,833...160,104,129
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G |
Vps18 |
VPS18 core subunit of CORVET and HOPS complexes |
involved_in |
IBA ISO |
PMID:21873635 (PMID:18799622) |
RGD |
PMID:18799622 PMID:21873635 |
RGD:13792537 |
NCBI chr 3:106,279,444...106,290,298
Ensembl chr 3:106,279,425...106,291,964
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G |
Vps35 |
VPS35 retromer complex component |
involved_in |
ISO |
(MGI:5694519|PMID:26203154) |
RGD |
PMID:26203154 |
MGI:5694519 |
NCBI chr19:21,765,771...21,801,620
Ensembl chr19:21,765,749...21,801,618
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G |
Washc5 |
WASH complex subunit 5 |
acts_upstream_of_or_within |
ISO |
MGI:6246601 (MGI:6199426|PMID:30061306) |
RGD |
PMID:30061306 |
MGI:6199426 |
NCBI chr 7:90,884,333...90,936,118
Ensembl chr 7:90,884,197...90,936,103
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G |
Zfyve26 |
zinc finger FYVE-type containing 26 |
acts_upstream_of_or_within |
ISO |
(PMID:25365221) |
RGD |
PMID:25365221 |
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NCBI chr 6:98,031,874...98,095,538
Ensembl chr 6:98,032,520...98,095,480
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G |
Zkscan3 |
zinc finger with KRAB and SCAN domains 3 |
involved_in |
ISO |
(PMID:23434374) |
RGD |
PMID:23434374 |
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NCBI chr17:43,217,168...43,232,828
Ensembl chr17:43,217,222...43,232,827
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G |
Chmp3 |
charged multivesicular body protein 3 |
involved_in |
ISO |
(PMID:16554368) |
RGD |
PMID:16554368 |
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NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959
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G |
Becn1 |
beclin 1 |
acts_upstream_of_or_within |
ISO |
MGI:2683833 (MGI:5888970|PMID:27994061) |
RGD |
PMID:27994061 |
MGI:5888970 |
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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G |
Chmp4b |
charged multivesicular body protein 4B |
involved_in |
ISO |
(PMID:21975012) |
RGD |
PMID:21975012 |
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NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
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G |
Ehmt2 |
euchromatic histone lysine methyltransferase 2 |
acts_upstream_of_or_within |
ISO |
(MGI:5543871|PMID:23918802) |
RGD |
PMID:23918802 |
MGI:5543871 |
NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
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G |
Fez1 |
fasciculation and elongation protein zeta 1 |
involved_in |
ISO ISS |
(PMID:25495476) GO_REF:0000024 |
RGD GO_Central |
PMID:25495476 |
GO_REF:0000024 |
NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:36,544,535...36,589,683
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G |
Fez2 |
fasciculation and elongation protein zeta 2 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:25495476) |
GO_Central RGD |
PMID:25495476 |
GO_REF:0000024 |
NCBI chr 6:16,654,572...16,694,628
Ensembl chr 6:16,654,614...16,694,626
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G |
Lrrk2 |
leucine-rich repeat kinase 2 |
involved_in |
IBA ISO |
PMID:21873635 (PMID:23916833) |
RGD |
PMID:23916833 PMID:21873635 |
RGD:13792537 |
NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
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G |
Mtm1 |
myotubularin 1 |
involved_in acts_upstream_of_or_within |
IBA ISO |
PMID:21873635 MGI:2450997 (MGI:5510937|PMID:23695157) |
RGD |
PMID:23695157 PMID:21873635 |
MGI:5510937, RGD:13792537 |
NCBI chr 6:488,691...506,964
Ensembl chr 6:488,969...506,860
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G |
Nupr1 |
nuclear protein 1, transcriptional regulator |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:20181828) |
UniProt RGD |
PMID:20181828 |
GO_REF:0000024 |
NCBI chr 1:181,213,292...181,215,327
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G |
Phf23 |
PHD finger protein 23 |
involved_in |
ISO IBA ISS |
(PMID:25484098) PMID:21873635 GO_REF:0000024 |
RGD GO_Central |
PMID:25484098 PMID:21873635 |
GO_REF:0000024, RGD:13792537 |
NCBI chr10:54,718,608...54,722,784
Ensembl chr10:54,717,724...54,722,782
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G |
Pink1 |
PTEN induced kinase 1 |
involved_in |
ISO |
(PMID:19279012) |
RGD |
PMID:19279012 |
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NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
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G |
Scfd1 |
sec1 family domain containing 1 |
involved_in |
ISO |
(PMID:21242315) |
RGD |
PMID:21242315 |
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NCBI chr 6:68,795,810...68,874,076
Ensembl chr 6:68,795,878...68,874,078
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G |
Sec22b |
SEC22 homolog B, vesicle trafficking protein |
involved_in |
ISO |
(PMID:21242315) |
RGD |
PMID:21242315 |
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NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026
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G |
Smcr8 |
SMCR8-C9orf72 complex subunit |
involved_in |
ISO |
(PMID:28195531) |
RGD |
PMID:28195531 |
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NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876
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G |
Tmem39a |
transmembrane protein 39a |
involved_in |
IBA ISS ISO |
PMID:21873635 GO_REF:0000024 (PMID:31806350) |
UniProt RGD |
PMID:31806350 PMID:21873635 |
GO_REF:0000024, RGD:13792537 |
NCBI chr11:62,160,631...62,189,964
Ensembl chr11:62,160,631...62,189,964
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G |
Becn1 |
beclin 1 |
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IMP |
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RGD |
PMID:25561470 |
RGD:11561937 |
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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G |
Coro1a |
coronin 1A |
involved_in |
ISO |
(PMID:12132654) |
RGD |
PMID:12132654 |
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NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534
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G |
Myo7a |
myosin VIIA |
acts_upstream_of_or_within |
ISO |
MGI:2155422 (MGI:2662763|PMID:12743369) |
RGD |
PMID:12743369 |
MGI:2662763 |
NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
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G |
P2rx7 |
purinergic receptor P2X 7 |
acts_upstream_of_or_within |
ISO |
MGI:3606250 (MGI:3699774|PMID:11544318) |
RGD |
PMID:11544318 |
MGI:3699774 |
NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
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G |
Srpx |
sushi-repeat-containing protein, X-linked |
acts_upstream_of_or_within involved_in |
ISO IBA |
MGI:3706175 (MGI:3852261|PMID:19368996) PMID:21873635 |
RGD |
PMID:19368996 PMID:21873635 |
MGI:3852261, RGD:13792537 |
NCBI chr X:12,676,984...12,751,296
Ensembl chr X:12,566,645...12,747,882
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G |
Rab14 |
RAB14, member RAS oncogene family |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 3:18,501,953...18,523,253
Ensembl chr 3:18,501,963...18,523,172
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G |
Cln3 |
CLN3 lysosomal/endosomal transmembrane protein, battenin |
involved_in |
ISO |
(MGI:5698740|PMID:26450516) |
RGD |
PMID:26450516 |
MGI:5698740 |
NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
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G |
Arl8b |
ADP-ribosylation factor like GTPase 8B |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:21802320) |
UniProt RGD |
PMID:21802320 |
GO_REF:0000024 |
NCBI chr 4:141,748,634...141,792,605
Ensembl chr 4:141,748,587...141,792,596
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G |
Cln3 |
CLN3 lysosomal/endosomal transmembrane protein, battenin |
involved_in |
ISO |
(MGI:5698740|PMID:26450516) |
RGD |
PMID:26450516 |
MGI:5698740 |
NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
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G |
Pikfyve |
phosphoinositide kinase, FYVE-type zinc finger containing |
involved_in |
ISO IBA |
(PMID:28779020) PMID:21873635 (MGI:6103777|PMID:28779020) |
RGD |
PMID:28779020 PMID:21873635 |
MGI:6103777, RGD:13792537 |
NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
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|
G |
Pla2g5 |
phospholipase A2, group V |
involved_in |
ISS ISO |
GO_REF:0000024 (MGI:3841317|PMID:19342668) |
UniProt RGD |
PMID:19342668 |
GO_REF:0000024 MGI:3841317 |
NCBI chr 5:151,041,339...151,109,433
Ensembl chr 5:151,041,340...151,062,658
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|
G |
Rab20 |
RAB20, member RAS oncogene family |
involved_in |
ISO |
(PMID:21255211) |
RGD |
PMID:21255211 |
|
NCBI chr16:78,019,337...78,043,529
Ensembl chr16:78,019,337...78,043,529
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|
G |
Rab34 |
RAB34, member RAS oncogene family |
involved_in |
IBA IEA ISO ISS |
PMID:21873635 GO_REF:0000107 (MGI:5467668|PMID:23197834) (PMID:21255211) GO_REF:0000024 |
Ensembl RGD UniProt |
PMID:21255211 PMID:23197834 PMID:21873635 |
GO_REF:0000024 GO_REF:0000107 MGI:5467668, RGD:13792537 |
NCBI chr10:63,083,319...63,087,538
Ensembl chr10:63,083,338...63,087,538
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|
G |
Rab39a |
RAB39A, member RAS oncogene family |
involved_in |
ISO IBA |
(PMID:21255211) PMID:21873635 |
RGD |
PMID:21255211 PMID:21873635 |
RGD:13792537 |
NCBI chr 8:54,088,744...54,105,756
Ensembl chr 8:54,088,129...54,106,483
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|
G |
Rab7a |
RAB7A, member RAS oncogene family |
involved_in |
ISO ISS IBA |
(PMID:21255211) GO_REF:0000024 PMID:21873635 |
RGD UniProt |
PMID:21255211 PMID:21873635 |
GO_REF:0000024, RGD:13792537 |
NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
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|
G |
Rab7b |
Rab7b, member RAS oncogene family |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr13:43,121,168...43,147,581
Ensembl chr13:43,121,226...43,147,581
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|
G |
Syt7 |
synaptotagmin 7 |
involved_in |
ISS ISO |
GO_REF:0000024 (MGI:3690533|PMID:16982801) |
UniProt RGD |
PMID:16982801 |
GO_REF:0000024 MGI:3690533 |
NCBI chr 1:207,031,369...207,093,787
Ensembl chr 1:207,031,592...207,089,026
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|
G |
Tmem175 |
transmembrane protein 175 |
involved_in |
ISS ISO |
GO_REF:0000024 (MGI:5693670|PMID:26317472) |
UniProt RGD |
PMID:26317472 |
GO_REF:0000024 MGI:5693670 |
NCBI chr14:1,073,410...1,089,764
Ensembl chr14:1,073,523...1,089,819
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|
|
G |
Spg11 |
SPG11 vesicle trafficking associated, spatacsin |
acts_upstream_of_or_within |
ISO |
MGI:4377985 (MGI:5749311|PMID:26284655) |
RGD |
PMID:26284655 |
MGI:5749311 |
NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:109,008,135...109,072,911
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|
|
G |
Arsg |
arylsulfatase G |
involved_in |
IEA |
GO_REF:0000107 |
Ensembl |
|
GO_REF:0000107 |
NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941
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|
G |
Atg2a |
autophagy related 2A |
involved_in |
ISO |
(PMID:30952800), (PMID:31271352) |
RGD |
PMID:30952800 PMID:31271352 |
|
NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
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G |
Becn1 |
beclin 1 |
|
IMP |
|
RGD |
PMID:25561470 |
RGD:11561937 |
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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|
G |
Elapor1 |
endosome-lysosome associated apoptosis and autophagy regulator 1 |
involved_in |
ISO |
(PMID:21072319) |
RGD |
PMID:21072319 |
|
NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
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|
G |
Lrsam1 |
leucine rich repeat and sterile alpha motif containing 1 |
involved_in |
ISO |
(PMID:25484098) |
RGD |
PMID:25484098 |
|
NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:16,223,367...16,264,154
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|
G |
Moap1 |
modulator of apoptosis 1 |
involved_in |
ISO |
(PMID:33783314) (MGI:6810697|PMID:33783314) |
RGD |
PMID:33783314 |
MGI:6810697 |
NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:121,882,366...121,898,643
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|
G |
Pip4k2a |
phosphatidylinositol-5-phosphate 4-kinase type 2 alpha |
involved_in |
ISO IEA |
(PMID:25578879) GO_REF:0000107 |
RGD Ensembl |
PMID:25578879 |
GO_REF:0000107 |
NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
|
|
G |
Pip4k2b |
phosphatidylinositol-5-phosphate 4-kinase type 2 beta |
involved_in |
ISO |
(PMID:25578879) |
RGD |
PMID:25578879 |
|
NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
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|
G |
Pip4k2c |
phosphatidylinositol-5-phosphate 4-kinase type 2 gamma |
involved_in |
ISO |
(PMID:25578879) |
RGD |
PMID:25578879 |
|
NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:63,020,000...63,035,078
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|
G |
Rab3gap1 |
RAB3 GTPase activating protein catalytic subunit 1 |
involved_in |
ISO ISS |
(PMID:25495476) GO_REF:0000024 |
RGD GO_Central |
PMID:25495476 |
GO_REF:0000024 |
NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
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|
G |
Rab3gap2 |
RAB3 GTPase activating non-catalytic protein subunit 2 |
involved_in |
ISS ISO IEA |
GO_REF:0000024 (PMID:25495476) GO_REF:0000107 |
GO_Central RGD Ensembl |
PMID:25495476 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
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|
G |
Ralb |
RAS like proto-oncogene B |
involved_in |
ISO IEA |
(PMID:24056301) GO_REF:0000107 |
RGD Ensembl |
PMID:24056301 |
GO_REF:0000107 |
NCBI chr13:30,588,036...30,624,199
Ensembl chr13:30,588,033...30,624,202
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|
G |
Sh3glb1 |
SH3 domain -containing GRB2-like endophilin B1 |
involved_in |
ISO |
(PMID:21068542) (MGI:5634888|PMID:21068542) |
RGD |
PMID:21068542 |
MGI:5634888 |
NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
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|
G |
Snx18 |
sorting nexin 18 |
involved_in |
ISO |
(PMID:29437695) |
RGD |
PMID:29437695 |
|
NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:45,232,325...45,258,345
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|
G |
Snx30 |
sorting nexin family member 30 |
involved_in |
ISO |
(PMID:32513819) |
RGD |
PMID:32513819 |
|
NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
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|
G |
Snx4 |
sorting nexin 4 |
involved_in |
ISO IBA |
(PMID:32513819), (PMID:33468622) PMID:21873635 |
RGD |
PMID:32513819 PMID:33468622 PMID:21873635 |
RGD:13792537 |
NCBI chr11:67,460,872...67,518,143
Ensembl chr11:67,460,870...67,518,174
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|
G |
Snx7 |
sorting nexin 7 |
involved_in |
ISO |
(PMID:32513819) |
RGD |
PMID:32513819 |
|
NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
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|
G |
Ulk1 |
unc-51 like autophagy activating kinase 1 |
|
IMP |
|
RGD |
PMID:23448468 |
RGD:13208863 |
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
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|
G |
Wdr45 |
WD repeat domain 45 |
involved_in |
ISO ISS IEA |
(PMID:31271352) GO_REF:0000024 GO_REF:0000107 |
RGD UniProt Ensembl |
PMID:31271352 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr X:14,776,280...14,782,197
Ensembl chr X:14,776,293...14,782,202
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|
G |
Wipi1 |
WD repeat domain, phosphoinositide interacting 1 |
involved_in |
ISO |
(PMID:31271352) |
RGD |
PMID:31271352 |
|
NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
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|
G |
Hspa8 |
heat shock protein family A (Hsp70) member 8 |
|
IMP |
|
RGD |
PMID:9038169 |
RGD:10059368 |
NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
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|
G |
Laptm5 |
lysosomal protein transmembrane 5 |
involved_in |
ISO |
(PMID:19787053) |
RGD |
PMID:19787053 |
|
NCBI chr 5:143,087,759...143,109,807
Ensembl chr 5:143,087,759...143,109,807
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|
G |
Mt3 |
metallothionein 3 |
involved_in |
ISS ISO |
GO_REF:0000024 (MGI:4881636|PMID:20544854) |
UniProt RGD |
PMID:20544854 |
GO_REF:0000024 MGI:4881636 |
NCBI chr19:10,848,754...10,850,158
Ensembl chr19:10,848,755...10,850,158
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|
|
G |
Grn |
granulin precursor |
involved_in |
ISS ISO IEA |
GO_REF:0000024 (PMID:28073925) GO_REF:0000107 (MGI:5905514|PMID:28073925) |
UniProt RGD Ensembl |
PMID:28073925 |
GO_REF:0000024 GO_REF:0000107 MGI:5905514 |
NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775
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|
|
G |
Anxa2 |
annexin A2 |
involved_in |
ISO |
(PMID:25139904) |
RGD |
PMID:25139904 |
|
NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
|
|
G |
Elapor1 |
endosome-lysosome associated apoptosis and autophagy regulator 1 |
involved_in |
ISO IBA |
(PMID:21072319) PMID:21873635 |
RGD |
PMID:21072319 PMID:21873635 |
RGD:13792537 |
NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
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|
|
G |
Atg16l1 |
autophagy related 16-like 1 |
acts_upstream_of_or_within |
ISO |
(MGI:5605433|PMID:24954904) |
RGD |
PMID:24954904 |
MGI:5605433 |
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
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|
G |
Atg5 |
autophagy related 5 |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 (MGI:5543871|PMID:23918802) |
Ensembl RGD |
PMID:23918802 |
GO_REF:0000107 MGI:5543871 |
NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
|
|
G |
Irgm |
immunity-related GTPase M |
involved_in |
ISO |
(PMID:28389568) |
RGD |
PMID:28389568 |
|
NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578
|
|
G |
Wipi2 |
WD repeat domain, phosphoinositide interacting 2 |
acts_upstream_of_or_within |
ISO |
(MGI:5605433|PMID:24954904) |
RGD |
PMID:24954904 |
MGI:5605433 |
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
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|
|
G |
Arfip2 |
ADP-ribosylation factor interacting protein 2 |
involved_in |
ISO ISS |
(PMID:33773106) GO_REF:0000024 |
RGD UniProt |
PMID:33773106 |
GO_REF:0000024 |
NCBI chr 1:159,974,255...159,980,398
Ensembl chr 1:159,974,201...159,980,336
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|
G |
Atg13 |
autophagy related 13 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
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|
G |
Atg16l1 |
autophagy related 16-like 1 |
acts_upstream_of_or_within |
ISO |
PR:Q80W47 (MGI:5605433|PMID:24954904) |
RGD |
PMID:24954904 |
MGI:5605433 |
NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529
|
|
G |
Atg4b |
autophagy related 4B, cysteine peptidase |
involved_in |
ISO |
(PMID:33773106) |
RGD |
PMID:33773106 |
|
NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
|
|
G |
Atg4d |
autophagy related 4D, cysteine peptidase |
involved_in |
ISO |
(PMID:33773106) |
RGD |
PMID:33773106 |
|
NCBI chr 8:19,807,733...19,817,321
Ensembl chr 8:19,807,766...19,817,321
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|
G |
Atg9a |
autophagy related 9A |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 9:76,677,403...76,688,035
Ensembl chr 9:76,677,404...76,687,986
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|
G |
Atg9b |
autophagy related 9B |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651
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|
G |
Lrba |
LPS responsive beige-like anchor protein |
involved_in |
ISO |
(PMID:33773106) |
RGD |
PMID:33773106 |
|
NCBI chr 2:171,623,668...172,202,576
Ensembl chr 2:171,621,507...172,202,724
|
|
G |
Mfn2 |
mitofusin 2 |
acts_upstream_of_or_within |
ISO |
(PMID:23455425) |
RGD |
PMID:23455425 |
|
NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
|
|
G |
Pacs2 |
phosphofurin acidic cluster sorting protein 2 |
acts_upstream_of_or_within |
ISO |
(PMID:23455425) |
RGD |
PMID:23455425 |
|
NCBI chr 6:132,096,992...132,156,702
Ensembl chr 6:132,096,901...132,154,583
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|
G |
Pik3c3 |
phosphatidylinositol 3-kinase, catalytic subunit type 3 |
acts_upstream_of_or_within |
ISO |
(MGI:5565574|PMID:24098492) |
RGD |
PMID:24098492 |
MGI:5565574 |
NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048
|
|
G |
Stx17 |
syntaxin 17 |
acts_upstream_of_or_within |
ISO |
(PMID:23455425) |
RGD |
PMID:23455425 |
|
NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
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|
G |
Trappc8 |
trafficking protein particle complex subunit 8 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr18:12,103,874...12,180,422
Ensembl chr18:12,103,877...12,180,107
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|
G |
Wdr45 |
WD repeat domain 45 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr X:14,776,280...14,782,197
Ensembl chr X:14,776,293...14,782,202
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|
G |
Wdr45b |
WD repeat domain 45B |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
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|
G |
Wipi1 |
WD repeat domain, phosphoinositide interacting 1 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
|
|
G |
Wipi2 |
WD repeat domain, phosphoinositide interacting 2 |
involved_in acts_upstream_of_or_within |
ISO IBA ISS |
(PMID:28561066) PR:Q8C0J2 (MGI:5605433|PMID:24954904) PMID:21873635 GO_REF:0000024 |
RGD UniProt |
PMID:24954904 PMID:28561066 PMID:21873635 |
GO_REF:0000024 MGI:5605433, RGD:13792537 |
NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
|
|
|
G |
Ift20 |
intraflagellar transport 20 |
involved_in |
ISO |
(MGI:5527012|PMID:24089209) |
RGD |
PMID:24089209 |
MGI:5527012 |
NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
|
|
G |
Ift88 |
intraflagellar transport 88 |
involved_in |
ISO |
(MGI:5527012|PMID:24089209) |
RGD |
PMID:24089209 |
MGI:5527012 |
NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
|
|
G |
Mtmr3 |
myotubularin related protein 3 |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:25578879) |
Ensembl RGD |
PMID:25578879 |
GO_REF:0000107 |
NCBI chr14:79,340,523...79,460,947
Ensembl chr14:79,340,513...79,461,041
|
|
G |
Pikfyve |
phosphoinositide kinase, FYVE-type zinc finger containing |
involved_in |
ISO |
(PMID:25578879) |
RGD |
PMID:25578879 |
|
NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
|
|
G |
Rab1b |
RAB1B, member RAS oncogene family |
involved_in |
ISO |
(PMID:20545908) |
RGD |
PMID:20545908 |
|
NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
|
|
G |
RGD1359108 |
similar to RIKEN cDNA 3110043O21 |
involved_in |
ISO IEA ISS |
(PMID:27334615) GO_REF:0000107 GO_REF:0000024 |
RGD Ensembl UniProt |
PMID:27334615 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408
|
|
G |
Rnf5 |
ring finger protein 5 |
acts_upstream_of_or_within |
ISO |
MGI:3775796 (MGI:5469257|PMID:23093945) |
RGD |
PMID:23093945 |
MGI:5469257 |
NCBI chr20:4,145,539...4,147,985
Ensembl chr20:4,145,507...4,147,985
|
|
G |
Tbc1d12 |
TBC1 domain family, member 12 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 1:236,603,597...236,685,859
Ensembl chr 1:236,603,607...236,685,859
|
|
G |
Tbc1d14 |
TBC1 domain family, member 14 |
involved_in |
ISO IEA IBA |
(PMID:22613832) GO_REF:0000107 PMID:21873635 |
RGD Ensembl |
PMID:22613832 PMID:21873635 |
GO_REF:0000107, RGD:13792537 |
NCBI chr14:74,172,652...74,272,182
Ensembl chr14:74,172,664...74,272,183
|
|
G |
Ubqln2 |
ubiquilin 2 |
involved_in |
ISO |
(PMID:20529957) |
RGD |
PMID:20529957 |
|
NCBI chr X:17,853,086...17,856,505
Ensembl chr X:17,853,114...17,856,505
|
|
|
G |
Atp13a2 |
ATPase cation transporting 13A2 |
involved_in |
IMP IBA ISO |
PMID:21873635 (PMID:22186024) |
RGD |
PMID:22186024 PMID:22186024 PMID:21873635 |
RGD:13442482, RGD:13792537 |
NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139
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G |
Cln3 |
CLN3 lysosomal/endosomal transmembrane protein, battenin |
involved_in |
ISO |
(MGI:6383362|PMID:25878248) |
RGD |
PMID:25878248 |
MGI:6383362 |
NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
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G |
LOC681325 |
hypothetical protein LOC681325 |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr X:74,312,698...74,316,311
Ensembl chr X:74,312,661...74,316,635
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G |
Lrrk2 |
leucine-rich repeat kinase 2 |
involved_in |
ISO |
(PMID:22012985) |
RGD |
PMID:22012985 |
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NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
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G |
Spns1 |
sphingolipid transporter 1 |
acts_upstream_of_or_within |
ISO |
(MGI:7345668|PMID:36161949) |
RGD |
PMID:36161949 |
MGI:7345668 |
NCBI chr 1:180,942,088...180,949,415
Ensembl chr 1:180,942,088...180,949,370
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G |
Tasl |
TLR adaptor interacting with endolysosomal SLC15A4 |
involved_in |
IBA ISO |
PMID:21873635 (PMID:31001245) |
RGD |
PMID:31001245 PMID:21873635 |
RGD:13792537 |
NCBI chr X:50,403,962...50,423,141
Ensembl chr X:50,361,248...50,423,269
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G |
Tmem165 |
transmembrane protein 165 |
involved_in |
ISO ISS |
(PMID:23569283) GO_REF:0000024 |
RGD UniProt |
PMID:23569283 |
GO_REF:0000024 |
NCBI chr14:31,993,489...32,018,717
Ensembl chr14:31,993,493...32,018,717
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G |
Tmem175 |
transmembrane protein 175 |
involved_in |
ISS ISO |
GO_REF:0000024 (MGI:5693670|PMID:26317472) |
UniProt RGD |
PMID:26317472 |
GO_REF:0000024 MGI:5693670 |
NCBI chr14:1,073,410...1,089,764
Ensembl chr14:1,073,523...1,089,819
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G |
Vps33a |
VPS33A core subunit of CORVET and HOPS complexes |
involved_in |
ISO IEA ISS |
(PMID:28013294) GO_REF:0000107 GO_REF:0000024 |
RGD Ensembl UniProt |
PMID:28013294 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
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G |
Laptm4b |
lysosomal protein transmembrane 4 beta |
involved_in |
ISO ISS |
(PMID:26280656) GO_REF:0000024 |
RGD UniProt |
PMID:26280656 |
GO_REF:0000024 |
NCBI chr 7:65,434,525...65,477,386
Ensembl chr 7:65,434,394...65,477,383
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G |
Grn |
granulin precursor |
acts_upstream_of_or_within |
ISO |
MGI:3762618 (MGI:6101836|PMID:28728022) |
RGD |
PMID:28728022 |
MGI:6101836 |
NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775
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G |
Laptm4b |
lysosomal protein transmembrane 4 beta |
involved_in |
ISO ISS |
(PMID:26280656) GO_REF:0000024 |
RGD UniProt |
PMID:26280656 |
GO_REF:0000024 |
NCBI chr 7:65,434,525...65,477,386
Ensembl chr 7:65,434,394...65,477,383
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Tmem106b |
transmembrane protein 106B |
acts_upstream_of_or_within |
ISO |
MGI:5319917 (MGI:6101836|PMID:28728022) |
RGD |
PMID:28728022 |
MGI:6101836 |
NCBI chr 4:41,328,125...41,347,315
Ensembl chr 4:41,327,994...41,345,619
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Trex1 |
three prime repair exonuclease 1 |
acts_upstream_of_or_within |
ISO |
MGI:3052754 (MGI:5460923|PMID:23160154) |
RGD |
PMID:23160154 |
MGI:5460923 |
NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
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G |
Mtm1 |
myotubularin 1 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:14722070) |
UniProt RGD |
PMID:14722070 |
GO_REF:0000024 |
NCBI chr 6:488,691...506,964
Ensembl chr 6:488,969...506,860
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Smurf1 |
SMAD specific E3 ubiquitin protein ligase 1 |
involved_in |
ISO |
(PMID:22020285) |
RGD |
PMID:22020285 |
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NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
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G |
Stbd1 |
starch binding domain 1 |
involved_in |
ISO |
MGI:6356543 (MGI:5803726|PMID:27358407) MGI:6356543 (MGI:5803726|PMID:27358407), (MGI:7261139|PMID:20810658) |
RGD |
PMID:20810658 PMID:27358407 |
MGI:5803726 MGI:7261139 |
NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
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Tom1 |
target of myb1 membrane trafficking protein |
involved_in |
ISO |
(PMID:23023224) |
RGD |
PMID:23023224 |
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NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,405,501...13,440,384
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G |
Vps16 |
VPS16 core subunit of CORVET and HOPS complexes |
involved_in |
IBA |
PMID:21873635 |
GO_Central |
PMID:21873635 |
RGD:13792537 |
NCBI chr 3:117,622,534...117,644,041
Ensembl chr 3:117,622,542...117,646,441
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Term paths to the root
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