Tfe3 (transcription factor binding to IGHM enhancer 3)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Tfe3 (transcription factor binding to IGHM enhancer 3) Rattus norvegicus

Analyze

Symbol:

Tfe3

Name:

transcription factor binding to IGHM enhancer 3

RGD ID:

1559642

Description:

Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to be involved in several processes, including negative regulation of cold-induced thermogenesis; positive regulation of brown fat cell differentiation; and regulation of osteoclast differentiation. Predicted to localize to cytosol and nucleoplasm. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human TFE3 (transcription factor binding to IGHM enhancer 3); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC317376; RGD1559642; similar to Tcfe3 protein; Tcfe3; transcription factor E3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	14,729,547 - 14,742,830 (-)	NCBI
Rnor_6.0 Ensembl	X	15,575,934 - 15,587,419 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	X	15,574,579 - 15,587,826 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,768,875 - 26,781,006 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	X	14,814,215 - 14,827,305 (-)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

congenital disorder of glycosylation type IIm (ISO)

genetic disease (ISO)

intellectual disability (ISO)

renal cell carcinoma (ISO)

Renal Cell Carcinoma, Xp11-Associated (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetylsalicylic acid (ISO)

aflatoxin B1 (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloroacetaldehyde (ISO)

cisplatin (ISO)

clodronic acid (ISO)

copper(II) sulfate (ISO)

cyclosporin A (EXP,ISO)

cylindrospermopsin (ISO)

cytarabine (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenofibrate (EXP,ISO)

fenvalerate (EXP)

fingolimod hydrochloride (ISO)

flutamide (EXP)

fonofos (ISO)

glycochenodeoxycholic acid (ISO)

ibuprofen (EXP,ISO)

indometacin (ISO)

ketamine (EXP)

menadione (ISO)

mercury dibromide (ISO)

metformin (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-acetyl-L-cysteine (ISO)

N-acetylsphingosine (ISO)

nefazodone (EXP)

nickel sulfate (ISO)

okadaic acid (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

parathion (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

terbufos (ISO)

tetrachloromethane (EXP)

torin 1 (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zebularine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

humoral immune response (ISO)

negative regulation of cold-induced thermogenesis (ISO,ISS)

positive regulation of brown fat cell differentiation (ISO)

positive regulation of cell adhesion (ISO,ISS)

positive regulation of transcription by RNA polymerase II (ISO,ISS)

positive regulation of transcription, DNA-templated (ISO)

regulation of osteoclast differentiation (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

cellular_component (ND)

cytoplasm (ISO,ISS)

cytosol (ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO,ISS)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

molecular_function (ND)

protein binding (ISO)

protein heterodimerization activity (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

sequence-specific double-stranded DNA binding (ISO)

transcription regulatory region sequence-specific DNA binding (ISO)

References

References - curated


1.	Argani P, etal., Oncogene. 2003 Aug 14;22(34):5374-8.
2.	Fujimoto Y, etal., Endocrinology. 2013 Oct;154(10):3577-88. doi: 10.1210/en.2013-1203. Epub 2013 Jul 24.
3.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	OMIM Disease Annotation Pipeline
5.	RGD automated import pipeline for gene-chemical interactions
6.	RGD comprehensive gene curation

Additional References at PubMed

PMID:11930005	PMID:15994295	PMID:16936731	PMID:21209915	PMID:22692423	PMID:26352760	PMID:27913603	PMID:29146937

Genomics

Comparative Map Data

Tfe3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	14,729,547 - 14,742,830 (-)	NCBI
Rnor_6.0 Ensembl	X	15,575,934 - 15,587,419 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	X	15,574,579 - 15,587,826 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,768,875 - 26,781,006 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	X	14,814,215 - 14,827,305 (-)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

TFE3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	X	49,028,726 - 49,043,410 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	X	49,028,726 - 49,043,357 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	X	48,886,237 - 48,900,990 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	X	48,886,237 - 48,900,883 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	48,771,186 - 48,787,934 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	X	48,642,489 - 48,657,239	NCBI
Celera	X	52,763,508 - 52,778,256 (+)	NCBI
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	46,544,091 - 46,558,358 (-)	NCBI		HuRef
CHM1_1	X	48,917,569 - 48,932,374 (-)	NCBI		CHM1_1

Tfe3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	7,628,769 - 7,641,441 (+)	NCBI	GRCm39		mm39
GRCm38	X	7,762,530 - 7,775,202 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	7,762,560 - 7,775,202 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	7,339,787 - 7,352,328 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	X	6,919,676 - 6,932,158 (+)	NCBI			mm8
Celera	X	3,695,480 - 3,708,004 (-)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	3.5	NCBI

Tfe3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955543	547,037 - 561,073 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955543	547,037 - 561,073 (-)	NCBI	ChiLan1.0	ChiLan1.0

TFE3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	X	49,182,795 - 49,197,194 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	49,182,795 - 49,197,194 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	X	41,326,802 - 41,341,574 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

TFE3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	X	42,183,037 - 42,193,892 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	X	42,181,639 - 42,192,709 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Tfe3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936721	933,572 - 945,717 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TFE3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	43,100,005 - 43,116,227 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	43,100,375 - 43,116,377 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	47,948,307 - 47,964,209 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TFE3
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	46,141,377 - 46,155,445 (-)	NCBI
ChlSab1.1 Ensembl	X	46,140,543 - 46,155,372 (-)	Ensembl

Tfe3
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624893	803,717 - 817,700 (-)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	44092703	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	1662453	21592783	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1662609	33443848	Rat
631204	Gluco15	Glucose level QTL 15		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	1838166	24331837	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	4282140	49282140	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	5954078	50954078	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	140
Count of miRNA genes:	74
Interacting mature miRNAs:	79
Transcripts:	ENSRNOT00000012829, ENSRNOT00000029776
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	26	15	7	11	7		2	66	30	34	11
Low	1	17	42	34	8	34	8	9	8	5	7		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000012829 ⟹ ENSRNOP00000012830

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	15,575,934 - 15,587,419 (-)	Ensembl

RefSeq Acc Id:

NM_001271227 ⟹ NP_001258156

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,547 - 14,742,769 (-)	NCBI
Rnor_6.0	X	15,574,579 - 15,587,698 (-)	NCBI
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI
Celera	X	14,814,215 - 14,827,305 (-)	NCBI

Sequence:

show sequence

ACTTCCTGTGGAGTTTCCCCAGCCCAAGGAGGAGGGGGAAAGAGGACGAGAGGGAGGCGAGCGG
TCGTTCGGGGTTAGGTTGGGGGGTGTCGGTCCGTTCAGGGCGGGTGATGACTCACGGCCCATCC
CATCTTCCCGACGCCGCCCGCCCACGCAGAGCTAGCTCCATGGCTTAACGGAGGAGGCAGCGGC
AAGCGGGGGGAGGGGGACTCTTATTTTGTTAGGGGGACCGGGCCAAGGCCCGACCGGCCTGGCA
GGGCTCGCCCGGGGCCGGGCGTCATGTCTCATGCAACTGAGACAGCTCGGGACGGCGTAGAGGC
CAGCGCGGAGGGCCCTCGAGCCGTGTTCGTGCTGTTGGAAGAGCGCAGGCCAGCTGACTCGGCC
CAGCTGCTCAGCCTGAATTCTTTGCTTCCGGAATCCGGGATTGTTGCTGACATCGAGTTAGAAA
ACATCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAGCCTCTATCCCTTCGCTCCAGCCT
TCCAATATCACTGCAGGCCACTCCGACCACCCCAGCTACACTCTCTGCATCGTCTTCTGCAGGG
GGCTCCCGGACCCCTGCCATGTCATCCTCCTCCTCACGGGTCTTGCTGCGGCAGCAGCTTATGA
GGGCCCAGGCACAGGAACAGGAGAGGCGTGAGCGGCGGGAACAGGCAGCGGCCGCTCCGTTCCC
CAGTCCTGCACCTGCCTCACCAGCCATCTCAGTGATTGGTGTGTCTGCTGGTGGCCACACATTG
AGTCGTCCACCCCCTGCTCAGGTGCCCAGGGAGGTACTCAAGGTTCAAACCCACCTAGAGAACC
CTACACGCTACCACTTGCAGCAAGCTCGCCGGCAACAGGTGAAACAGTACTTGTCTACTACACT
TGGGCCCAAGCTGGCTTCACAGGCCCTCACCCCACCACCAGGGCCTTCCAGTGCTCAGCCACTT
CCTGCCCCTGAAACTGCTCATGCCACCGGCCCTACAGGCAGTGCTCCTAACAGCCCCATGGCAT
TGCTCACCATTGGGTCCAGCTCAGAGAAGGAGATTGATGATGTCATTGATGAGATCATCAGCCT
GGAGTCCAGTTACAACGATGAGATGCTCAGCTATCTTCCTGGAGGCACTGCAGGGCTGCAGCTC
CCCAGCACGCTGCCTGTGTCAGGAAATCTACTTGATGTGTACAGCAGTCAGGGTGTGGCCACCC
CAGCCATCACTGTCAGCAATTCCTGTCCTGCTGAGCTGCCTAACATCAAACGGGAGATCTCGGA
AACCGAGGCAAAGGCCCTTTTGAAGGAGCGACAGAAGAAAGACAATCACAACCTAATTGAACGA
CGCAGGCGATTCAACATTAACGATAGGATCAAAGAGCTGGGCACCCTCATCCCCAAGTCCAATG
ATCCGGAGATGCGCTGGAACAAGGGAACCATCCTGAAGGCATCTGTGGATTATATCCGCAAATT
ACAGAAGGAACAGCAGCGCTCTAAAGACCTGGAGAGCCGGCAGCGGTCCCTGGAGCAAGCCAAC
CGAAGCCTGCAGCTCCGAATTCAGGAGCTGGAACTACAGGCACAGATCCATGGTCTGCCGGTCC
CTCCCAACCCAGGACTGCTCTCCCTAGCCACCAGCTCGGTCTCTGACAGCCTCAAGCCGGAACA
ACTGGACATTGAGGAGGAGGGCAGGCCAAGCACAACAACATTTCATGTGTCAGGGGGGCCTACC
CAGAATGCTCCTCCACAACAGCCTCCGGCACCGCCTTCGGATACCCTTCTGGACCTGCACTTTC
CCAGCGACCACTTGGGGGACCTGGGGGACCCCTTCCACCTAGGGCTAGAGGACATTCTGATGGA
GGAGGAGGGGATGGTGGGAGGACTGTCAGGGGGTGCCCTGTCCCCACTGCGGGCTGCTTCCGAC
CCCCTGCTTTCTTCAGTATCCCCGGCTGTTTCCAAGTCGAGCAGCCGGCGCAGCAGCTTCAGCA
TGGAAGACGAGTCCTGATCAGGCCTCACTCCTCCCCTCGGGCTTCCCCACCCAGGGAAGGAGAA
CAAGCCTGGATGAGACCCTACCCTCCTGTGACACTGTCCTGTCCAGGAGATCTGGGGAACGAGG
AGTTGCAATCAGGCCCCAACCCTGTACTAGGCCAGGAGGAGGAATCAGGTGAGGCCCTGCCACT
TTTCCAGAGGACCTGCCTTGTGCAGGTATTTGTGAGGGAGAAGGCAGGGGAGAACTGGGAAAGG
TCAGTTCATCACTTGAGCATCATAGCCTTACCCCTTGTCCCTGGTCCTACTCCTGCCTCGGTGA
GGGAAGGAGGCAGGACAAGGTATGCCCCTGGTCACTAGGGACCCTTATAAACCTGTTTATAAAG
GTCTCCCAAGGAAAGGAGATGCCAGGGTGCCGCTCCATTCCTTCTCTGGGAAGTGCCAGGCCAG
CTTTTCCTGGCACTGGAGGAAGAAAAGTAAAAATAGTGTCTCACCCCTGGAGGGTTGATCCCTA
TCCCTACCTTATGACCCCTGACTTGTTCTGGCAAGGAACAGAAGTAAGGATGTGATCCAGCCCA
TTGCCCTGGGCCCCATCCCTTCTCCATAGGAAAAGCTCAGCACAGGTATTTCAGGTAGAGAGGA
ATGACTAGGCTCTGATCTCCCACGTAGAGGCTCCAGCCCCAGCCCTGACCCTTAGCATCATACC
GTGCAAGCATTCCATTCAGTTCCTAAGCTCCCTGTCTTAACCTGGGACCAGCCTGGAACCTGAC
ATATGAGGGCTCTGTGCTGACCTTATTCTTGAGGAAGGGAACAGATTTCGAAATCTTGTGGATT
GACATTCTAGACCTAGATCAAGTGAGACTTAGATCCTCACCCTTGAGAAGATCTTGCCTTTTCT
GCCTTGAGGGCCAATTTGGGGGAGATGATAGGGATTAGTGTAGACCCAGTCTAGGTACCCCAAT
ACTTCCCTTCAAGTTGTAGAAAATGGTAAAGAAAGGGCGTGTCCAGGCTGTTTATCAGTCCAGG
GAAAAATAGAAATCTCCCTAAAAGGCAGGGACCTGAAGGAATGGTGGCAAAAGTATATTGTATC
GCTCATTTGTTTGTGAATTTTTTATTGAACCCACCTACTCAAAAGCTAGGTCACCCCGGACCTC
TGTCCCATCCACACCGTTCTCCATCTGGGGGACTAACCCTGTTTCAGAGCCAGTCCTTAGAGCC
AGTCCCTACCTACTAGTCCCATCCATGCCACCTACATCCAAGGTCTTCAGCTTTAAACTGCTGG
GGCCAGGCCCCAAGGAGGGTTTACTGAGGGGTCCGTAGGTTTGACTAAAATAATAAATGCTAGG
CGTGTTTGATGCGCTTTTAACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_006256721 ⟹ XP_006256783

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,741,430 (-)	NCBI
Rnor_6.0	X	15,574,579 - 15,586,379 (-)	NCBI
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI

Sequence:

show sequence

ACCGATTGCACCATCCCGGTCTGGGTGGGTCCTCGGTCTCTCCTTTTCGGCTCCTCTCACCTCC
ATCAGCCTTGCTTTGAAGCTCCAGCCCTTCCTTGTCCATATCCCTGCTTTCCTCAGCACCCATC
TTTTCCAACTTATGTGCAGTGGTGTCCTGAATTCTTTGCTTCCGGAATCCGGGATTGTTGCTGA
CATCGAGTTAGAAAACATCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAGCCTCTATCC
CTTCGCTCCAGCCTTCCAATATCACTGCAGGCCACTCCGACCACCCCAGCTACACTCTCTGCAT
CGTCTTCTGCAGGGGGCTCCCGGACCCCTGCCATGTCATCCTCCTCCTCACGGGTCTTGCTGCG
GCAGCAGCTTATGAGGGCCCAGGCACAGGAACAGGAGAGGCGTGAGCGGCGGGAACAGGCAGCG
GCCGCTCCGTTCCCCAGTCCTGCACCTGCCTCACCAGCCATCTCAGTGATTGGTGTGTCTGCTG
GTGGCCACACATTGAGTCGTCCACCCCCTGCTCAGGTGCCCAGGGAGGTACTCAAGGTTCAAAC
CCACCTAGAGAACCCTACACGCTACCACTTGCAGCAAGCTCGCCGGCAACAGGTGAAACAGTAC
TTGTCTACTACACTTGGGCCCAAGCTGGCTTCACAGGCCCTCACCCCACCACCAGGGCCTTCCA
GTGCTCAGCCACTTCCTGCCCCTGAAACTGCTCATGCCACCGGCCCTACAGGCAGTGCTCCTAA
CAGCCCCATGGCATTGCTCACCATTGGGTCCAGCTCAGAGAAGGAGATTGATGATGTCATTGAT
GAGATCATCAGCCTGGAGTCCAGTTACAACGATGAGATGCTCAGCTATCTTCCTGGAGGCACTG
CAGGGCTGCAGCTCCCCAGCACGCTGCCTGTGTCAGGAAATCTACTTGATGTGTACAGCAGTCA
GGGTGTGGCCACCCCAGCCATCACTGTCAGCAATTCCTGTCCTGCTGAGCTGCCTAACATCAAA
CGGGAGATCTCGGAAACCGAGGCAAAGGCCCTTTTGAAGGAGCGACAGAAGAAAGACAATCACA
ACCTAATTGAACGACGCAGGCGATTCAACATTAACGATAGGATCAAAGAGCTGGGCACCCTCAT
CCCCAAGTCCAATGATCCGGAGATGCGCTGGAACAAGGGAACCATCCTGAAGGCATCTGTGGAT
TATATCCGCAAATTACAGAAGGAACAGCAGCGCTCTAAAGACCTGGAGAGCCGGCAGCGGTCCC
TGGAGCAAGCCAACCGAAGCCTGCAGCTCCGAATTCAGGAGCTGGAACTACAGGCACAGATCCA
TGGTCTGCCGGTCCCTCCCAACCCAGGACTGCTCTCCCTAGCCACCAGCTCGGTCTCTGACAGC
CTCAAGCCGGAACAACTGGACATTGAGGAGGAGGGCAGGCCAAGCACAACAACATTTCATGTGT
CAGGGGGGCCTACCCAGAATGCTCCTCCACAACAGCCTCCGGCACCGCCTTCGGATACCCTTCT
GGACCTGCACTTTCCCAGCGACCACTTGGGGGACCTGGGGGACCCCTTCCACCTAGGGCTAGAG
GACATTCTGATGGAGGAGGAGGGGATGGTGGGAGGACTGTCAGGGGGTGCCCTGTCCCCACTGC
GGGCTGCTTCCGACCCCCTGCTTTCTTCAGTATCCCCGGCTGTTTCCAAGTCGAGCAGCCGGCG
CAGCAGCTTCAGCATGGAAGACGAGTCCTGATCAGGCCTCACTCCTCCCCTCGGGCTTCCCCAC
CCAGGGAAGGAGAACAAGCCTGGATGAGACCCTACCCTCCTGTGACACTGTCCTGTCCAGGAGA
TCTGGGGAACGAGGAGTTGCAATCAGGCCCCAACCCTGTACTAGGCCAGGAGGAGGAATCAGGT
GAGGCCCTGCCACTTTTCCAGAGGACCTGCCTTGTGCAGGTATTTGTGAGGGAGAAGGCAGGGG
AGAACTGGGAAAGGTCAGTTCATCACTTGAGCATCATAGCCTTACCCCTTGTCCCTGGTCCTAC
TCCTGCCTCGGTGAGGGAAGGAGGCAGGACAAGGTATGCCCCTGGTCACTAGGGACCCTTATAA
ACCTGTTTATAAAGGTCTCCCAAGGAAAGGAGATGCCAGGGTGCCGCTCCATTCCTTCTCTGGG
AAGTGCCAGGCCAGCTTTTCCTGGCACTGGAGGAAGAAAAGTAAAAATAGTGTCTCACCCCTGG
AGGGTTGATCCCTATCCCTACCTTATGACCCCTGACTTGTTCTGGCAAGGAACAGAAGTAAGGA
TGTGATCCAGCCCATTGCCCTGGGCCCCATCCCTTCTCCATAGGAAAAGCTCAGCACAGGTATT
TCAGGTAGAGAGGAATGACTAGGCTCTGATCTCCCACGTAGAGGCTCCAGCCCCAGCCCTGACC
CTTAGCATCATACCGTGCAAGCATTCCATTCAGTTCCTAAGCTCCCTGTCTTAACCTGGGACCA
GCCTGGAACCTGACATATGAGGGCTCTGTGCTGACCTTATTCTTGAGGAAGGGAACAGATTTCG
AAATCTTGTGGATTGACATTCTAGACCTAGATCAAGTGAGACTTAGATCCTCACCCTTGAGAAG
ATCTTGCCTTTTCTGCCTTGAGGGCCAATTTGGGGGAGATGATAGGGATTAGTGTAGACCCAGT
CTAGGTACCCCAATACTTCCCTTCAAGTTGTAGAAAATGGTAAAGAAAGGGCGTGTCCAGGCTG
TTTATCAGTCCAGGGAAAAATAGAAATCTCCCTAAAAGGCAGGGACCTGAAGGAATGGTGGCAA
AAGTATATTGTATCGCTCATTTGTTTGTGAATTTTTTATTGAACCCACCTACTCAAAAGCTAGG
TCACCCCGGACCTCTGTCCCATCCACACCGTTCTCCATCTGGGGGACTAACCCTGTTTCAGAGC
CAGTCCTTAGAGCCAGTCCCTACCTACTAGTCCCATCCATGCCACCTACATCCAAGGTCTTCAG
CTTTAAACTGCTGGGGCCAGGCCCCAAGGAGGGTTTACTGAGGGGTCCGTAGGTTTGACTAAAA
TAATAAATGCTAGGCGTGTTTGATGCGCTTTTAACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_006256722 ⟹ XP_006256784

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,742,764 (-)	NCBI
Rnor_6.0	X	15,574,579 - 15,587,700 (-)	NCBI
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI

Sequence:

show sequence

TCACTTCCTGTGGAGTTTCCCCAGCCCAAGGAGGAGGGGGAAAGAGGACGAGAGGGAGGCGAGC
GGTCGTTCGGGGTTAGGTTGGGGGGTGTCGGTCCGTTCAGGGCGGGTGATGACTCACGGCCCAT
CCCATCTTCCCGACGCCGCCCGCCCACGCAGAGCTAGCTCCATGGCTTAACGGAGGAGGCAGCG
GCAAGCGGGGGGAGGGGGACTCTTATTTTGTTAGGGGGACCGGGCCAAGGCCCGACCGGCCTGG
CAGGGCTCGCCCGGGGCCGGGCGTCATGTCTCATGCAACTGAGACAGCTCGGGACGGCGTAGAG
GCCAGCGCGGAGGGCCCTCGAGCCGTGTTCGTGCTGTTGGAAGAGCGCAGGCCAGCTGACTCGG
CCCAGCTGCTCAGCCTGAATTCTTTGCTTCCGGAATCCGGGATTGTTGCTGACATCGAGTTAGA
AAACATCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAGCCTCTATCCCTTCGCTCCAGC
CTTCCAATATCACTGCAGGCCACTCCGACCACCCCAGCTACACTCTCTGCATCGTCTTCTGCAG
GGGGCTCCCGGACCCCTGCCATGTCATCCTCCTCCTCACGGGTCTTGCTGCGGCAGCAGCTTAT
GAGGGCCCAGGCACAGGAACAGGAGAGGCGTGAGCGGCGGGAACAGGCAGCGGCCGCTCCGTTC
CCCAGTCCTGCACCTGCCTCACCAGCCATCTCAGTGATTGGTGTGTCTGCTGGTGGCCACACAT
TGAGTCGTCCACCCCCTGCTCAGGTGCCCAGGGAGGTACTCAAGGTTCAAACCCACCTAGAGAA
CCCTACACGCTACCACTTGCAGCAAGCTCGCCGGCAACAGGTGAAACAGTACTTGTCTACTACA
CTTGGGCCCAAGCTGGCTTCACAGGCCCTCACCCCACCACCAGGGCCTTCCAGTGCTCAGCCAC
TTCCTGCCCCTGAAACTGCTCATGCCACCGGCCCTACAGGCAGTGCTCCTAACAGCCCCATGGC
ATTGCTCACCATTGGGTCCAGCTCAGAGAAGGAGCTGCCTGTGTCAGGAAATCTACTTGATGTG
TACAGCAGTCAGGGTGTGGCCACCCCAGCCATCACTGTCAGCAATTCCTGTCCTGCTGAGCTGC
CTAACATCAAACGGGAGATCTCGGAAACCGAGGCAAAGGCCCTTTTGAAGGAGCGACAGAAGAA
AGACAATCACAACCTAATTGAACGACGCAGGCGATTCAACATTAACGATAGGATCAAAGAGCTG
GGCACCCTCATCCCCAAGTCCAATGATCCGGAGATGCGCTGGAACAAGGGAACCATCCTGAAGG
CATCTGTGGATTATATCCGCAAATTACAGAAGGAACAGCAGCGCTCTAAAGACCTGGAGAGCCG
GCAGCGGTCCCTGGAGCAAGCCAACCGAAGCCTGCAGCTCCGAATTCAGGAGCTGGAACTACAG
GCACAGATCCATGGTCTGCCGGTCCCTCCCAACCCAGGACTGCTCTCCCTAGCCACCAGCTCGG
TCTCTGACAGCCTCAAGCCGGAACAACTGGACATTGAGGAGGAGGGCAGGCCAAGCACAACAAC
ATTTCATGTGTCAGGGGGGCCTACCCAGAATGCTCCTCCACAACAGCCTCCGGCACCGCCTTCG
GATACCCTTCTGGACCTGCACTTTCCCAGCGACCACTTGGGGGACCTGGGGGACCCCTTCCACC
TAGGGCTAGAGGACATTCTGATGGAGGAGGAGGGGATGGTGGGAGGACTGTCAGGGGGTGCCCT
GTCCCCACTGCGGGCTGCTTCCGACCCCCTGCTTTCTTCAGTATCCCCGGCTGTTTCCAAGTCG
AGCAGCCGGCGCAGCAGCTTCAGCATGGAAGACGAGTCCTGATCAGGCCTCACTCCTCCCCTCG
GGCTTCCCCACCCAGGGAAGGAGAACAAGCCTGGATGAGACCCTACCCTCCTGTGACACTGTCC
TGTCCAGGAGATCTGGGGAACGAGGAGTTGCAATCAGGCCCCAACCCTGTACTAGGCCAGGAGG
AGGAATCAGGTGAGGCCCTGCCACTTTTCCAGAGGACCTGCCTTGTGCAGGTATTTGTGAGGGA
GAAGGCAGGGGAGAACTGGGAAAGGTCAGTTCATCACTTGAGCATCATAGCCTTACCCCTTGTC
CCTGGTCCTACTCCTGCCTCGGTGAGGGAAGGAGGCAGGACAAGGTATGCCCCTGGTCACTAGG
GACCCTTATAAACCTGTTTATAAAGGTCTCCCAAGGAAAGGAGATGCCAGGGTGCCGCTCCATT
CCTTCTCTGGGAAGTGCCAGGCCAGCTTTTCCTGGCACTGGAGGAAGAAAAGTAAAAATAGTGT
CTCACCCCTGGAGGGTTGATCCCTATCCCTACCTTATGACCCCTGACTTGTTCTGGCAAGGAAC
AGAAGTAAGGATGTGATCCAGCCCATTGCCCTGGGCCCCATCCCTTCTCCATAGGAAAAGCTCA
GCACAGGTATTTCAGGTAGAGAGGAATGACTAGGCTCTGATCTCCCACGTAGAGGCTCCAGCCC
CAGCCCTGACCCTTAGCATCATACCGTGCAAGCATTCCATTCAGTTCCTAAGCTCCCTGTCTTA
ACCTGGGACCAGCCTGGAACCTGACATATGAGGGCTCTGTGCTGACCTTATTCTTGAGGAAGGG
AACAGATTTCGAAATCTTGTGGATTGACATTCTAGACCTAGATCAAGTGAGACTTAGATCCTCA
CCCTTGAGAAGATCTTGCCTTTTCTGCCTTGAGGGCCAATTTGGGGGAGATGATAGGGATTAGT
GTAGACCCAGTCTAGGTACCCCAATACTTCCCTTCAAGTTGTAGAAAATGGTAAAGAAAGGGCG
TGTCCAGGCTGTTTATCAGTCCAGGGAAAAATAGAAATCTCCCTAAAAGGCAGGGACCTGAAGG
AATGGTGGCAAAAGTATATTGTATCGCTCATTTGTTTGTGAATTTTTTATTGAACCCACCTACT
CAAAAGCTAGGTCACCCCGGACCTCTGTCCCATCCACACCGTTCTCCATCTGGGGGACTAACCC
TGTTTCAGAGCCAGTCCTTAGAGCCAGTCCCTACCTACTAGTCCCATCCATGCCACCTACATCC
AAGGTCTTCAGCTTTAAACTGCTGGGGCCAGGCCCCAAGGAGGGTTTACTGAGGGGTCCGTAGG
TTTGACTAAAATAATAAATGCTAGGCGTGTTTGATGCGCTTTTAACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_006256723 ⟹ XP_006256785

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,742,757 (-)	NCBI
Rnor_6.0	X	15,574,579 - 15,587,699 (-)	NCBI
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI

Sequence:

show sequence

CACTTCCTGTGGAGTTTCCCCAGCCCAAGGAGGAGGGGGAAAGAGGACGAGAGGGAGGCGAGCG
GTCGTTCGGGGTTAGGTTGGGGGGTGTCGGTCCGTTCAGGGCGGGTGATGACTCACGGCCCATC
CCATCTTCCCGACGCCGCCCGCCCACGCAGAGCTAGCTCCATGGCTTAACGGAGGAGGCAGCGG
CAAGCGGGGGGAGGGGGACTCTTATTTTGTTAGGGGGACCGGGCCAAGGCCCGACCGGCCTGGC
AGGGCTCGCCCGGGGCCGGGCGTCATGTCTCATGCAACTGAGACAGCTCGGGACGGCGTAGAGG
CCAGCGCGGAGGGCCCTCGAGCCGTGTTCGTGCTGTTGGAAGAGCGCAGGCCAGCTGACTCGGC
CCAGCTGCTCAGCCTGAATTCTTTGCTTCCGGAATCCGGGATTGTTGCTGACATCGAGTTAGAA
AACATCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAGCCTCTATCCCTTCGCTCCAGGC
CACTCCGACCACCCCAGCTACACTCTCTGCATCGTCTTCTGCAGGGGGCTCCCGGACCCCTGCC
ATGTCATCCTCCTCCTCACGGGTCTTGCTGCGGCAGCAGCTTATGAGGGCCCAGGCACAGGAAC
AGGAGAGGCGTGAGCGGCGGGAACAGGCAGCGGCCGCTCCGTTCCCCAGTCCTGCACCTGCCTC
ACCAGCCATCTCAGTGATTGGTGTGTCTGCTGGTGGCCACACATTGAGTCGTCCACCCCCTGCT
CAGGTGCCCAGGGAGGTACTCAAGGTTCAAACCCACCTAGAGAACCCTACACGCTACCACTTGC
AGCAAGCTCGCCGGCAACAGGTGAAACAGTACTTGTCTACTACACTTGGGCCCAAGCTGGCTTC
ACAGGCCCTCACCCCACCACCAGGGCCTTCCAGTGCTCAGCCACTTCCTGCCCCTGAAACTGCT
CATGCCACCGGCCCTACAGGCAGTGCTCCTAACAGCCCCATGGCATTGCTCACCATTGGGTCCA
GCTCAGAGAAGGAGATTGATGATGTCATTGATGAGATCATCAGCCTGGAGTCCAGTTACAACGA
TGAGATGCTCAGCTATCTTCCTGGAGGCACTGCAGGGCTGCAGCTCCCCAGCACGCTGCCTGTG
TCAGGAAATCTACTTGATGTGTACAGCAGTCAGGGTGTGGCCACCCCAGCCATCACTGTCAGCA
ATTCCTGTCCTGCTGAGCTGCCTAACATCAAACGGGAGATCTCGGAAACCGAGGCAAAGGCCCT
TTTGAAGGAGCGACAGAAGAAAGACAATCACAACCTAATTGAACGACGCAGGCGATTCAACATT
AACGATAGGATCAAAGAGCTGGGCACCCTCATCCCCAAGTCCAATGATCCGGAGATGCGCTGGA
ACAAGGGAACCATCCTGAAGGCATCTGTGGATTATATCCGCAAATTACAGAAGGAACAGCAGCG
CTCTAAAGACCTGGAGAGCCGGCAGCGGTCCCTGGAGCAAGCCAACCGAAGCCTGCAGCTCCGA
ATTCAGGAGCTGGAACTACAGGCACAGATCCATGGTCTGCCGGTCCCTCCCAACCCAGGACTGC
TCTCCCTAGCCACCAGCTCGGTCTCTGACAGCCTCAAGCCGGAACAACTGGACATTGAGGAGGA
GGGCAGGCCAAGCACAACAACATTTCATGTGTCAGGGGGGCCTACCCAGAATGCTCCTCCACAA
CAGCCTCCGGCACCGCCTTCGGATACCCTTCTGGACCTGCACTTTCCCAGCGACCACTTGGGGG
ACCTGGGGGACCCCTTCCACCTAGGGCTAGAGGACATTCTGATGGAGGAGGAGGGGATGGTGGG
AGGACTGTCAGGGGGTGCCCTGTCCCCACTGCGGGCTGCTTCCGACCCCCTGCTTTCTTCAGTA
TCCCCGGCTGTTTCCAAGTCGAGCAGCCGGCGCAGCAGCTTCAGCATGGAAGACGAGTCCTGAT
CAGGCCTCACTCCTCCCCTCGGGCTTCCCCACCCAGGGAAGGAGAACAAGCCTGGATGAGACCC
TACCCTCCTGTGACACTGTCCTGTCCAGGAGATCTGGGGAACGAGGAGTTGCAATCAGGCCCCA
ACCCTGTACTAGGCCAGGAGGAGGAATCAGGTGAGGCCCTGCCACTTTTCCAGAGGACCTGCCT
TGTGCAGGTATTTGTGAGGGAGAAGGCAGGGGAGAACTGGGAAAGGTCAGTTCATCACTTGAGC
ATCATAGCCTTACCCCTTGTCCCTGGTCCTACTCCTGCCTCGGTGAGGGAAGGAGGCAGGACAA
GGTATGCCCCTGGTCACTAGGGACCCTTATAAACCTGTTTATAAAGGTCTCCCAAGGAAAGGAG
ATGCCAGGGTGCCGCTCCATTCCTTCTCTGGGAAGTGCCAGGCCAGCTTTTCCTGGCACTGGAG
GAAGAAAAGTAAAAATAGTGTCTCACCCCTGGAGGGTTGATCCCTATCCCTACCTTATGACCCC
TGACTTGTTCTGGCAAGGAACAGAAGTAAGGATGTGATCCAGCCCATTGCCCTGGGCCCCATCC
CTTCTCCATAGGAAAAGCTCAGCACAGGTATTTCAGGTAGAGAGGAATGACTAGGCTCTGATCT
CCCACGTAGAGGCTCCAGCCCCAGCCCTGACCCTTAGCATCATACCGTGCAAGCATTCCATTCA
GTTCCTAAGCTCCCTGTCTTAACCTGGGACCAGCCTGGAACCTGACATATGAGGGCTCTGTGCT
GACCTTATTCTTGAGGAAGGGAACAGATTTCGAAATCTTGTGGATTGACATTCTAGACCTAGAT
CAAGTGAGACTTAGATCCTCACCCTTGAGAAGATCTTGCCTTTTCTGCCTTGAGGGCCAATTTG
GGGGAGATGATAGGGATTAGTGTAGACCCAGTCTAGGTACCCCAATACTTCCCTTCAAGTTGTA
GAAAATGGTAAAGAAAGGGCGTGTCCAGGCTGTTTATCAGTCCAGGGAAAAATAGAAATCTCCC
TAAAAGGCAGGGACCTGAAGGAATGGTGGCAAAAGTATATTGTATCGCTCATTTGTTTGTGAAT
TTTTTATTGAACCCACCTACTCAAAAGCTAGGTCACCCCGGACCTCTGTCCCATCCACACCGTT
CTCCATCTGGGGGACTAACCCTGTTTCAGAGCCAGTCCTTAGAGCCAGTCCCTACCTACTAGTC
CCATCCATGCCACCTACATCCAAGGTCTTCAGCTTTAAACTGCTGGGGCCAGGCCCCAAGGAGG
GTTTACTGAGGGGTCCGTAGGTTTGACTAAAATAATAAATGCTAGGCGTGTTTGATGCGCTTTT
AACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_006256725 ⟹ XP_006256787

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	15,574,579 - 15,587,826 (-)	NCBI
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI

Sequence:

show sequence

CGGGCCAAAGTCGGTGTTCCCTACGACTCGAAGTGGTGGCTTAGGGCGGGCTCTCCAATCTCCC
GGCTGCAACTGGCTGCCTTGCTCGGGAGCCTGAATTCTTTGCTTCCGGAATCCGGGATTGTTGC
TGACATCGAGTTAGAAAACATCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAGCCTCTA
TCCCTTCGCTCCAGGCCACTCCGACCACCCCAGCTACACTCTCTGCATCGTCTTCTGCAGGGGG
CTCCCGGACCCCTGCCATGTCATCCTCCTCCTCACGGGTCTTGCTGCGGCAGCAGCTTATGAGG
GCCCAGGCACAGGAACAGGAGAGGCGTGAGCGGCGGGAACAGGCAGCGGCCGCTCCGTTCCCCA
GTCCTGCACCTGCCTCACCAGCCATCTCAGTGATTGGTGTGTCTGCTGGTGGCCACACATTGAG
TCGTCCACCCCCTGCTCAGGTGCCCAGGGAGGTACTCAAGGTTCAAACCCACCTAGAGAACCCT
ACACGCTACCACTTGCAGCAAGCTCGCCGGCAACAGGTGAAACAGTACTTGTCTACTACACTTG
GGCCCAAGCTGGCTTCACAGGCCCTCACCCCACCACCAGGGCCTTCCAGTGCTCAGCCACTTCC
TGCCCCTGAAACTGCTCATGCCACCGGCCCTACAGGCAGTGCTCCTAACAGCCCCATGGCATTG
CTCACCATTGGGTCCAGCTCAGAGAAGGAGATTGATGATGTCATTGATGAGATCATCAGCCTGG
AGTCCAGTTACAACGATGAGATGCTCAGCTATCTTCCTGGAGGCACTGCAGGGCTGCAGCTCCC
CAGCACGCTGCCTGTGTCAGGAAATCTACTTGATGTGTACAGCAGTCAGGGTGTGGCCACCCCA
GCCATCACTGTCAGCAATTCCTGTCCTGCTGAGCTGCCTAACATCAAACGGGAGATCTCGGAAA
CCGAGGCAAAGGCCCTTTTGAAGGAGCGACAGAAGAAAGACAATCACAACCTAATTGAACGACG
CAGGCGATTCAACATTAACGATAGGATCAAAGAGCTGGGCACCCTCATCCCCAAGTCCAATGAT
CCGGAGATGCGCTGGAACAAGGGAACCATCCTGAAGGCATCTGTGGATTATATCCGCAAATTAC
AGAAGGAACAGCAGCGCTCTAAAGACCTGGAGAGCCGGCAGCGGTCCCTGGAGCAAGCCAACCG
AAGCCTGCAGCTCCGAATTCAGGAGCTGGAACTACAGGCACAGATCCATGGTCTGCCGGTCCCT
CCCAACCCAGGACTGCTCTCCCTAGCCACCAGCTCGGTCTCTGACAGCCTCAAGCCGGAACAAC
TGGACATTGAGGAGGAGGGCAGGCCAAGCACAACAACATTTCATGTGTCAGGGGGGCCTACCCA
GAATGCTCCTCCACAACAGCCTCCGGCACCGCCTTCGGATACCCTTCTGGACCTGCACTTTCCC
AGCGACCACTTGGGGGACCTGGGGGACCCCTTCCACCTAGGGCTAGAGGACATTCTGATGGAGG
AGGAGGGGATGGTGGGAGGACTGTCAGGGGGTGCCCTGTCCCCACTGCGGGCTGCTTCCGACCC
CCTGCTTTCTTCAGTATCCCCGGCTGTTTCCAAGTCGAGCAGCCGGCGCAGCAGCTTCAGCATG
GAAGACGAGTCCTGATCAGGCCTCACTCCTCCCCTCGGGCTTCCCCACCCAGGGAAGGAGAACA
AGCCTGGATGAGACCCTACCCTCCTGTGACACTGTCCTGTCCAGGAGATCTGGGGAACGAGGAG
TTGCAATCAGGCCCCAACCCTGTACTAGGCCAGGAGGAGGAATCAGGTGAGGCCCTGCCACTTT
TCCAGAGGACCTGCCTTGTGCAGGTATTTGTGAGGGAGAAGGCAGGGGAGAACTGGGAAAGGTC
AGTTCATCACTTGAGCATCATAGCCTTACCCCTTGTCCCTGGTCCTACTCCTGCCTCGGTGAGG
GAAGGAGGCAGGACAAGGTATGCCCCTGGTCACTAGGGACCCTTATAAACCTGTTTATAAAGGT
CTCCCAAGGAAAGGAGATGCCAGGGTGCCGCTCCATTCCTTCTCTGGGAAGTGCCAGGCCAGCT
TTTCCTGGCACTGGAGGAAGAAAAGTAAAAATAGTGTCTCACCCCTGGAGGGTTGATCCCTATC
CCTACCTTATGACCCCTGACTTGTTCTGGCAAGGAACAGAAGTAAGGATGTGATCCAGCCCATT
GCCCTGGGCCCCATCCCTTCTCCATAGGAAAAGCTCAGCACAGGTATTTCAGGTAGAGAGGAAT
GACTAGGCTCTGATCTCCCACGTAGAGGCTCCAGCCCCAGCCCTGACCCTTAGCATCATACCGT
GCAAGCATTCCATTCAGTTCCTAAGCTCCCTGTCTTAACCTGGGACCAGCCTGGAACCTGACAT
ATGAGGGCTCTGTGCTGACCTTATTCTTGAGGAAGGGAACAGATTTCGAAATCTTGTGGATTGA
CATTCTAGACCTAGATCAAGTGAGACTTAGATCCTCACCCTTGAGAAGATCTTGCCTTTTCTGC
CTTGAGGGCCAATTTGGGGGAGATGATAGGGATTAGTGTAGACCCAGTCTAGGTACCCCAATAC
TTCCCTTCAAGTTGTAGAAAATGGTAAAGAAAGGGCGTGTCCAGGCTGTTTATCAGTCCAGGGA
AAAATAGAAATCTCCCTAAAAGGCAGGGACCTGAAGGAATGGTGGCAAAAGTATATTGTATCGC
TCATTTGTTTGTGAATTTTTTATTGAACCCACCTACTCAAAAGCTAGGTCACCCCGGACCTCTG
TCCCATCCACACCGTTCTCCATCTGGGGGACTAACCCTGTTTCAGAGCCAGTCCTTAGAGCCAG
TCCCTACCTACTAGTCCCATCCATGCCACCTACATCCAAGGTCTTCAGCTTTAAACTGCTGGGG
CCAGGCCCCAAGGAGGGTTTACTGAGGGGTCCGTAGGTTTGACTAAAATAATAAATGCTAGGCG
TGTTTGATGCGCTTTTAACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_006256726 ⟹ XP_006256788

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	15,574,579 - 15,587,295 (-)	NCBI
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI

Sequence:

show sequence

CCACCTGGGGCCGGGAGTGACAACCTGAATTCTTTGCTTCCGGAATCCGGGATTGTTGCTGACA
TCGAGTTAGAAAACATCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAGCCTCTATCCCT
TCGCTCCAGGCCACTCCGACCACCCCAGCTACACTCTCTGCATCGTCTTCTGCAGGGGGCTCCC
GGACCCCTGCCATGTCATCCTCCTCCTCACGGGTCTTGCTGCGGCAGCAGCTTATGAGGGCCCA
GGCACAGGAACAGGAGAGGCGTGAGCGGCGGGAACAGGCAGCGGCCGCTCCGTTCCCCAGTCCT
GCACCTGCCTCACCAGCCATCTCAGTGATTGGTGTGTCTGCTGGTGGCCACACATTGAGTCGTC
CACCCCCTGCTCAGGTGCCCAGGGAGGTACTCAAGGTTCAAACCCACCTAGAGAACCCTACACG
CTACCACTTGCAGCAAGCTCGCCGGCAACAGGTGAAACAGTACTTGTCTACTACACTTGGGCCC
AAGCTGGCTTCACAGGCCCTCACCCCACCACCAGGGCCTTCCAGTGCTCAGCCACTTCCTGCCC
CTGAAACTGCTCATGCCACCGGCCCTACAGGCAGTGCTCCTAACAGCCCCATGGCATTGCTCAC
CATTGGGTCCAGCTCAGAGAAGGAGATTGATGATGTCATTGATGAGATCATCAGCCTGGAGTCC
AGTTACAACGATGAGATGCTCAGCTATCTTCCTGGAGGCACTGCAGGGCTGCAGCTCCCCAGCA
CGCTGCCTGTGTCAGGAAATCTACTTGATGTGTACAGCAGTCAGGGTGTGGCCACCCCAGCCAT
CACTGTCAGCAATTCCTGTCCTGCTGAGCTGCCTAACATCAAACGGGAGATCTCGGAAACCGAG
GCAAAGGCCCTTTTGAAGGAGCGACAGAAGAAAGACAATCACAACCTAATTGAACGACGCAGGC
GATTCAACATTAACGATAGGATCAAAGAGCTGGGCACCCTCATCCCCAAGTCCAATGATCCGGA
GATGCGCTGGAACAAGGGAACCATCCTGAAGGCATCTGTGGATTATATCCGCAAATTACAGAAG
GAACAGCAGCGCTCTAAAGACCTGGAGAGCCGGCAGCGGTCCCTGGAGCAAGCCAACCGAAGCC
TGCAGCTCCGAATTCAGGAGCTGGAACTACAGGCACAGATCCATGGTCTGCCGGTCCCTCCCAA
CCCAGGACTGCTCTCCCTAGCCACCAGCTCGGTCTCTGACAGCCTCAAGCCGGAACAACTGGAC
ATTGAGGAGGAGGGCAGGCCAAGCACAACAACATTTCATGTGTCAGGGGGGCCTACCCAGAATG
CTCCTCCACAACAGCCTCCGGCACCGCCTTCGGATACCCTTCTGGACCTGCACTTTCCCAGCGA
CCACTTGGGGGACCTGGGGGACCCCTTCCACCTAGGGCTAGAGGACATTCTGATGGAGGAGGAG
GGGATGGTGGGAGGACTGTCAGGGGGTGCCCTGTCCCCACTGCGGGCTGCTTCCGACCCCCTGC
TTTCTTCAGTATCCCCGGCTGTTTCCAAGTCGAGCAGCCGGCGCAGCAGCTTCAGCATGGAAGA
CGAGTCCTGATCAGGCCTCACTCCTCCCCTCGGGCTTCCCCACCCAGGGAAGGAGAACAAGCCT
GGATGAGACCCTACCCTCCTGTGACACTGTCCTGTCCAGGAGATCTGGGGAACGAGGAGTTGCA
ATCAGGCCCCAACCCTGTACTAGGCCAGGAGGAGGAATCAGGTGAGGCCCTGCCACTTTTCCAG
AGGACCTGCCTTGTGCAGGTATTTGTGAGGGAGAAGGCAGGGGAGAACTGGGAAAGGTCAGTTC
ATCACTTGAGCATCATAGCCTTACCCCTTGTCCCTGGTCCTACTCCTGCCTCGGTGAGGGAAGG
AGGCAGGACAAGGTATGCCCCTGGTCACTAGGGACCCTTATAAACCTGTTTATAAAGGTCTCCC
AAGGAAAGGAGATGCCAGGGTGCCGCTCCATTCCTTCTCTGGGAAGTGCCAGGCCAGCTTTTCC
TGGCACTGGAGGAAGAAAAGTAAAAATAGTGTCTCACCCCTGGAGGGTTGATCCCTATCCCTAC
CTTATGACCCCTGACTTGTTCTGGCAAGGAACAGAAGTAAGGATGTGATCCAGCCCATTGCCCT
GGGCCCCATCCCTTCTCCATAGGAAAAGCTCAGCACAGGTATTTCAGGTAGAGAGGAATGACTA
GGCTCTGATCTCCCACGTAGAGGCTCCAGCCCCAGCCCTGACCCTTAGCATCATACCGTGCAAG
CATTCCATTCAGTTCCTAAGCTCCCTGTCTTAACCTGGGACCAGCCTGGAACCTGACATATGAG
GGCTCTGTGCTGACCTTATTCTTGAGGAAGGGAACAGATTTCGAAATCTTGTGGATTGACATTC
TAGACCTAGATCAAGTGAGACTTAGATCCTCACCCTTGAGAAGATCTTGCCTTTTCTGCCTTGA
GGGCCAATTTGGGGGAGATGATAGGGATTAGTGTAGACCCAGTCTAGGTACCCCAATACTTCCC
TTCAAGTTGTAGAAAATGGTAAAGAAAGGGCGTGTCCAGGCTGTTTATCAGTCCAGGGAAAAAT
AGAAATCTCCCTAAAAGGCAGGGACCTGAAGGAATGGTGGCAAAAGTATATTGTATCGCTCATT
TGTTTGTGAATTTTTTATTGAACCCACCTACTCAAAAGCTAGGTCACCCCGGACCTCTGTCCCA
TCCACACCGTTCTCCATCTGGGGGACTAACCCTGTTTCAGAGCCAGTCCTTAGAGCCAGTCCCT
ACCTACTAGTCCCATCCATGCCACCTACATCCAAGGTCTTCAGCTTTAAACTGCTGGGGCCAGG
CCCCAAGGAGGGTTTACTGAGGGGTCCGTAGGTTTGACTAAAATAATAAATGCTAGGCGTGTTT
GATGCGCTTTTAACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_006256727 ⟹ XP_006256789

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,741,641 (-)	NCBI
Rnor_6.0	X	15,574,579 - 15,586,797 (-)	NCBI
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI

Sequence:

show sequence

TTAGGGGGAGGTCTCAGATATGCCGGGAGTGTGTGTGTGTGAATAATGGAGCGAAGCAACTTGA
CGACCCCAATCGGTTCACTGTTGCTACCCCGCTCACCCGGGGTCTGTACAGAAAGGCCGAGATA
GTGGAAACCCCTCTTGTCTTATCCAATGGGTGCTTAAATTTGAGGCAGGCGGGCAGACTGGAAA
GATACAGTTCACTTTTTAGGCGCGGGGGAGGGTGTTGGGGGGAGGCCTCAAGCCTTATATGGGA
ACCCAGAGGAGGGTCTTGTTTCTGTTGCCACTCGCCCTGGCCTCGCAGCTGGCCCTGCCCACTC
CCTACCCACACACCCCCTCTTCCTTTTATTTCGCCCTCCCAGCCGGTCTTTCAGTTCCCGGGTG
TAATCTTGAATCAGTCTCTAGAGCTGGACCTGAATTCTTTGCTTCCGGAATCCGGGATTGTTGC
TGACATCGAGTTAGAAAACATCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAGCCTCTA
TCCCTTCGCTCCAGCCTTCCAATATCACTGCAGGCCACTCCGACCACCCCAGCTACACTCTCTG
CATCGTCTTCTGCAGGGGGCTCCCGGACCCCTGCCATGTCATCCTCCTCCTCACGGGTCTTGCT
GCGGCAGCAGCTTATGAGGGCCCAGGCACAGGAACAGGAGAGGCGTGAGCGGCGGGAACAGGCA
GCGGCCGCTCCGTTCCCCAGTCCTGCACCTGCCTCACCAGCCATCTCAGTGATTGGTGTGTCTG
CTGGTGGCCACACATTGAGTCGTCCACCCCCTGCTCAGGTGCCCAGGGAGGTACTCAAGGTTCA
AACCCACCTAGAGAACCCTACACGCTACCACTTGCAGCAAGCTCGCCGGCAACAGGTGAAACAG
TACTTGTCTACTACACTTGGGCCCAAGCTGGCTTCACAGGCCCTCACCCCACCACCAGGGCCTT
CCAGTGCTCAGCCACTTCCTGCCCCTGAAACTGCTCATGCCACCGGCCCTACAGGCAGTGCTCC
TAACAGCCCCATGGCATTGCTCACCATTGGGTCCAGCTCAGAGAAGGAGATTGATGATGTCATT
GATGAGATCATCAGCCTGGAGTCCAGTTACAACGATGAGATGCTCAGCTATCTTCCTGGAGGCA
CTGCAGGGCTGCAGCTCCCCAGCACGCTGCCTGTGTCAGGAAATCTACTTGATGTGTACAGCAG
TCAGGGTGTGGCCACCCCAGCCATCACTGTCAGCAATTCCTGTCCTGCTGAGCTGCCTAACATC
AAACGGGAGATCTCGGAAACCGAGGCAAAGGCCCTTTTGAAGGAGCGACAGAAGAAAGACAATC
ACAACCTAATTGAACGACGCAGGCGATTCAACATTAACGATAGGATCAAAGAGCTGGGCACCCT
CATCCCCAAGTCCAATGATCCGGAGATGCGCTGGAACAAGGGAACCATCCTGAAGGCATCTGTG
GATTATATCCGCAAATTACAGAAGGAACAGCAGCGCTCTAAAGACCTGGAGAGCCGGCAGCGGT
CCCTGGAGCAAGCCAACCGAAGCCTGCAGCTCCGAATTCAGGAGCTGGAACTACAGGCACAGAT
CCATGGTCTGCCGGTCCCTCCCAACCCAGGACTGCTCTCCCTAGCCACCAGCTCGGTCTCTGAC
AGCCTCAAGCCGGAACAACTGGACATTGAGGAGGAGGGCAGGCCAAGCACAACAACATTTCATG
TGTCAGGGGGGCCTACCCAGAATGCTCCTCCACAACAGCCTCCGGCACCGCCTTCGGATACCCT
TCTGGACCTGCACTTTCCCAGCGACCACTTGGGGGACCTGGGGGACCCCTTCCACCTAGGGCTA
GAGGACATTCTGATGGAGGAGGAGGGGATGGTGGGAGGACTGTCAGGGGGTGCCCTGTCCCCAC
TGCGGGCTGCTTCCGACCCCCTGCTTTCTTCAGTATCCCCGGCTGTTTCCAAGTCGAGCAGCCG
GCGCAGCAGCTTCAGCATGGAAGACGAGTCCTGATCAGGCCTCACTCCTCCCCTCGGGCTTCCC
CACCCAGGGAAGGAGAACAAGCCTGGATGAGACCCTACCCTCCTGTGACACTGTCCTGTCCAGG
AGATCTGGGGAACGAGGAGTTGCAATCAGGCCCCAACCCTGTACTAGGCCAGGAGGAGGAATCA
GGTGAGGCCCTGCCACTTTTCCAGAGGACCTGCCTTGTGCAGGTATTTGTGAGGGAGAAGGCAG
GGGAGAACTGGGAAAGGTCAGTTCATCACTTGAGCATCATAGCCTTACCCCTTGTCCCTGGTCC
TACTCCTGCCTCGGTGAGGGAAGGAGGCAGGACAAGGTATGCCCCTGGTCACTAGGGACCCTTA
TAAACCTGTTTATAAAGGTCTCCCAAGGAAAGGAGATGCCAGGGTGCCGCTCCATTCCTTCTCT
GGGAAGTGCCAGGCCAGCTTTTCCTGGCACTGGAGGAAGAAAAGTAAAAATAGTGTCTCACCCC
TGGAGGGTTGATCCCTATCCCTACCTTATGACCCCTGACTTGTTCTGGCAAGGAACAGAAGTAA
GGATGTGATCCAGCCCATTGCCCTGGGCCCCATCCCTTCTCCATAGGAAAAGCTCAGCACAGGT
ATTTCAGGTAGAGAGGAATGACTAGGCTCTGATCTCCCACGTAGAGGCTCCAGCCCCAGCCCTG
ACCCTTAGCATCATACCGTGCAAGCATTCCATTCAGTTCCTAAGCTCCCTGTCTTAACCTGGGA
CCAGCCTGGAACCTGACATATGAGGGCTCTGTGCTGACCTTATTCTTGAGGAAGGGAACAGATT
TCGAAATCTTGTGGATTGACATTCTAGACCTAGATCAAGTGAGACTTAGATCCTCACCCTTGAG
AAGATCTTGCCTTTTCTGCCTTGAGGGCCAATTTGGGGGAGATGATAGGGATTAGTGTAGACCC
AGTCTAGGTACCCCAATACTTCCCTTCAAGTTGTAGAAAATGGTAAAGAAAGGGCGTGTCCAGG
CTGTTTATCAGTCCAGGGAAAAATAGAAATCTCCCTAAAAGGCAGGGACCTGAAGGAATGGTGG
CAAAAGTATATTGTATCGCTCATTTGTTTGTGAATTTTTTATTGAACCCACCTACTCAAAAGCT
AGGTCACCCCGGACCTCTGTCCCATCCACACCGTTCTCCATCTGGGGGACTAACCCTGTTTCAG
AGCCAGTCCTTAGAGCCAGTCCCTACCTACTAGTCCCATCCATGCCACCTACATCCAAGGTCTT
CAGCTTTAAACTGCTGGGGCCAGGCCCCAAGGAGGGTTTACTGAGGGGTCCGTAGGTTTGACTA
AAATAATAAATGCTAGGCGTGTTTGATGCGCTTTTAACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_006256728 ⟹ XP_006256790

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,742,830 (-)	NCBI
Rnor_6.0	X	15,574,579 - 15,587,826 (-)	NCBI
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI

Sequence:

show sequence

CGGGCCAAAGTCGGTGTTCCCTACGACTCGAAGTGGTGGCTTAGGGCGGGCTCTCCAATCTCCC
GGCTGCAACTGGCTGCCTTGCTCGGGAGCCTGAATTCTTTGCTTCCGGAATCCGGGATTGTTGC
TGACATCGAGTTAGAAAACATCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAGCCTCTA
TCCCTTCGCTCCAGCCTTCCAATATCACTGCAGGCCACTCCGACCACCCCAGCTACACTCTCTG
CATCGTCTTCTGCAGGGGGCTCCCGGACCCCTGCCATGTCATCCTCCTCCTCACGGGTCTTGCT
GCGGCAGCAGCTTATGAGGGCCCAGGCACAGGAACAGGAGAGGCGTGAGCGGCGGGAACAGGCA
GCGGCCGCTCCGTTCCCCAGTCCTGCACCTGCCTCACCAGCCATCTCAGTGATTGGTGTGTCTG
CTGGTGGCCACACATTGAGTCGTCCACCCCCTGCTCAGGTGCCCAGGGAGGTACTCAAGGTTCA
AACCCACCTAGAGAACCCTACACGCTACCACTTGCAGCAAGCTCGCCGGCAACAGGTGAAACAG
TACTTGTCTACTACACTTGGGCCCAAGCTGGCTTCACAGGCCCTCACCCCACCACCAGGGCCTT
CCAGTGCTCAGCCACTTCCTGCCCCTGAAACTGCTCATGCCACCGGCCCTACAGGCAGTGCTCC
TAACAGCCCCATGGCATTGCTCACCATTGGGTCCAGCTCAGAGAAGGAGATTGATGATGTCATT
GATGAGATCATCAGCCTGGAGTCCAGTTACAACGATGAGATGCTCAGCTATCTTCCTGGAGGCA
CTGCAGGGCTGCAGCTCCCCAGCACGCTGCCTGTGTCAGGAAATCTACTTGATGTGTACAGCAG
TCAGGGTGTGGCCACCCCAGCCATCACTGTCAGCAATTCCTGTCCTGCTGAGCTGCCTAACATC
AAACGGGAGATCTCGGAAACCGAGGCAAAGGCCCTTTTGAAGGAGCGACAGAAGAAAGACAATC
ACAACCTAATTGAACGACGCAGGCGATTCAACATTAACGATAGGATCAAAGAGCTGGGCACCCT
CATCCCCAAGTCCAATGATCCGGAGATGCGCTGGAACAAGGGAACCATCCTGAAGGCATCTGTG
GATTATATCCGCAAATTACAGAAGGAACAGCAGCGCTCTAAAGACCTGGAGAGCCGGCAGCGGT
CCCTGGAGCAAGCCAACCGAAGCCTGCAGCTCCGAATTCAGGAGCTGGAACTACAGGCACAGAT
CCATGGTCTGCCGGTCCCTCCCAACCCAGGACTGCTCTCCCTAGCCACCAGCTCGGTCTCTGAC
AGCCTCAAGCCGGAACAACTGGACATTGAGGAGGAGGGCAGGCCAAGCACAACAACATTTCATG
TGTCAGGGGGGCCTACCCAGAATGCTCCTCCACAACAGCCTCCGGCACCGCCTTCGGATACCCT
TCTGGACCTGCACTTTCCCAGCGACCACTTGGGGGACCTGGGGGACCCCTTCCACCTAGGGCTA
GAGGACATTCTGATGGAGGAGGAGGGGATGGTGGGAGGACTGTCAGGGGGTGCCCTGTCCCCAC
TGCGGGCTGCTTCCGACCCCCTGCTTTCTTCAGTATCCCCGGCTGTTTCCAAGTCGAGCAGCCG
GCGCAGCAGCTTCAGCATGGAAGACGAGTCCTGATCAGGCCTCACTCCTCCCCTCGGGCTTCCC
CACCCAGGGAAGGAGAACAAGCCTGGATGAGACCCTACCCTCCTGTGACACTGTCCTGTCCAGG
AGATCTGGGGAACGAGGAGTTGCAATCAGGCCCCAACCCTGTACTAGGCCAGGAGGAGGAATCA
GGTGAGGCCCTGCCACTTTTCCAGAGGACCTGCCTTGTGCAGGTATTTGTGAGGGAGAAGGCAG
GGGAGAACTGGGAAAGGTCAGTTCATCACTTGAGCATCATAGCCTTACCCCTTGTCCCTGGTCC
TACTCCTGCCTCGGTGAGGGAAGGAGGCAGGACAAGGTATGCCCCTGGTCACTAGGGACCCTTA
TAAACCTGTTTATAAAGGTCTCCCAAGGAAAGGAGATGCCAGGGTGCCGCTCCATTCCTTCTCT
GGGAAGTGCCAGGCCAGCTTTTCCTGGCACTGGAGGAAGAAAAGTAAAAATAGTGTCTCACCCC
TGGAGGGTTGATCCCTATCCCTACCTTATGACCCCTGACTTGTTCTGGCAAGGAACAGAAGTAA
GGATGTGATCCAGCCCATTGCCCTGGGCCCCATCCCTTCTCCATAGGAAAAGCTCAGCACAGGT
ATTTCAGGTAGAGAGGAATGACTAGGCTCTGATCTCCCACGTAGAGGCTCCAGCCCCAGCCCTG
ACCCTTAGCATCATACCGTGCAAGCATTCCATTCAGTTCCTAAGCTCCCTGTCTTAACCTGGGA
CCAGCCTGGAACCTGACATATGAGGGCTCTGTGCTGACCTTATTCTTGAGGAAGGGAACAGATT
TCGAAATCTTGTGGATTGACATTCTAGACCTAGATCAAGTGAGACTTAGATCCTCACCCTTGAG
AAGATCTTGCCTTTTCTGCCTTGAGGGCCAATTTGGGGGAGATGATAGGGATTAGTGTAGACCC
AGTCTAGGTACCCCAATACTTCCCTTCAAGTTGTAGAAAATGGTAAAGAAAGGGCGTGTCCAGG
CTGTTTATCAGTCCAGGGAAAAATAGAAATCTCCCTAAAAGGCAGGGACCTGAAGGAATGGTGG
CAAAAGTATATTGTATCGCTCATTTGTTTGTGAATTTTTTATTGAACCCACCTACTCAAAAGCT
AGGTCACCCCGGACCTCTGTCCCATCCACACCGTTCTCCATCTGGGGGACTAACCCTGTTTCAG
AGCCAGTCCTTAGAGCCAGTCCCTACCTACTAGTCCCATCCATGCCACCTACATCCAAGGTCTT
CAGCTTTAAACTGCTGGGGCCAGGCCCCAAGGAGGGTTTACTGAGGGGTCCGTAGGTTTGACTA
AAATAATAAATGCTAGGCGTGTTTGATGCGCTTTTAACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_006256729 ⟹ XP_006256791

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,742,473 (-)	NCBI
Rnor_6.0	X	15,574,579 - 15,587,296 (-)	NCBI
Rnor_5.0	X	16,355,812 - 16,369,002 (-)	NCBI

Sequence:

show sequence

GCCACCTGGGGCCGGGAGTGACAACCTGAATTCTTTGCTTCCGGAATCCGGGATTGTTGCTGAC
ATCGAGTTAGAAAACATCCTTGATCCTGACAGCTTCTACGAGCTCAAAAGCCAGCCTCTATCCC
TTCGCTCCAGCCTTCCAATATCACTGCAGGCCACTCCGACCACCCCAGCTACACTCTCTGCATC
GTCTTCTGCAGGGGGCTCCCGGACCCCTGCCATGTCATCCTCCTCCTCACGGGTCTTGCTGCGG
CAGCAGCTTATGAGGGCCCAGGCACAGGAACAGGAGAGGCGTGAGCGGCGGGAACAGGCAGCGG
CCGCTCCGTTCCCCAGTCCTGCACCTGCCTCACCAGCCATCTCAGTGATTGGTGTGTCTGCTGG
TGGCCACACATTGAGTCGTCCACCCCCTGCTCAGGTGCCCAGGGAGGTACTCAAGGTTCAAACC
CACCTAGAGAACCCTACACGCTACCACTTGCAGCAAGCTCGCCGGCAACAGGTGAAACAGTACT
TGTCTACTACACTTGGGCCCAAGCTGGCTTCACAGGCCCTCACCCCACCACCAGGGCCTTCCAG
TGCTCAGCCACTTCCTGCCCCTGAAACTGCTCATGCCACCGGCCCTACAGGCAGTGCTCCTAAC
AGCCCCATGGCATTGCTCACCATTGGGTCCAGCTCAGAGAAGGAGATTGATGATGTCATTGATG
AGATCATCAGCCTGGAGTCCAGTTACAACGATGAGATGCTCAGCTATCTTCCTGGAGGCACTGC
AGGGCTGCAGCTCCCCAGCACGCTGCCTGTGTCAGGAAATCTACTTGATGTGTACAGCAGTCAG
GGTGTGGCCACCCCAGCCATCACTGTCAGCAATTCCTGTCCTGCTGAGCTGCCTAACATCAAAC
GGGAGATCTCGGAAACCGAGGCAAAGGCCCTTTTGAAGGAGCGACAGAAGAAAGACAATCACAA
CCTAATTGAACGACGCAGGCGATTCAACATTAACGATAGGATCAAAGAGCTGGGCACCCTCATC
CCCAAGTCCAATGATCCGGAGATGCGCTGGAACAAGGGAACCATCCTGAAGGCATCTGTGGATT
ATATCCGCAAATTACAGAAGGAACAGCAGCGCTCTAAAGACCTGGAGAGCCGGCAGCGGTCCCT
GGAGCAAGCCAACCGAAGCCTGCAGCTCCGAATTCAGGAGCTGGAACTACAGGCACAGATCCAT
GGTCTGCCGGTCCCTCCCAACCCAGGACTGCTCTCCCTAGCCACCAGCTCGGTCTCTGACAGCC
TCAAGCCGGAACAACTGGACATTGAGGAGGAGGGCAGGCCAAGCACAACAACATTTCATGTGTC
AGGGGGGCCTACCCAGAATGCTCCTCCACAACAGCCTCCGGCACCGCCTTCGGATACCCTTCTG
GACCTGCACTTTCCCAGCGACCACTTGGGGGACCTGGGGGACCCCTTCCACCTAGGGCTAGAGG
ACATTCTGATGGAGGAGGAGGGGATGGTGGGAGGACTGTCAGGGGGTGCCCTGTCCCCACTGCG
GGCTGCTTCCGACCCCCTGCTTTCTTCAGTATCCCCGGCTGTTTCCAAGTCGAGCAGCCGGCGC
AGCAGCTTCAGCATGGAAGACGAGTCCTGATCAGGCCTCACTCCTCCCCTCGGGCTTCCCCACC
CAGGGAAGGAGAACAAGCCTGGATGAGACCCTACCCTCCTGTGACACTGTCCTGTCCAGGAGAT
CTGGGGAACGAGGAGTTGCAATCAGGCCCCAACCCTGTACTAGGCCAGGAGGAGGAATCAGGTG
AGGCCCTGCCACTTTTCCAGAGGACCTGCCTTGTGCAGGTATTTGTGAGGGAGAAGGCAGGGGA
GAACTGGGAAAGGTCAGTTCATCACTTGAGCATCATAGCCTTACCCCTTGTCCCTGGTCCTACT
CCTGCCTCGGTGAGGGAAGGAGGCAGGACAAGGTATGCCCCTGGTCACTAGGGACCCTTATAAA
CCTGTTTATAAAGGTCTCCCAAGGAAAGGAGATGCCAGGGTGCCGCTCCATTCCTTCTCTGGGA
AGTGCCAGGCCAGCTTTTCCTGGCACTGGAGGAAGAAAAGTAAAAATAGTGTCTCACCCCTGGA
GGGTTGATCCCTATCCCTACCTTATGACCCCTGACTTGTTCTGGCAAGGAACAGAAGTAAGGAT
GTGATCCAGCCCATTGCCCTGGGCCCCATCCCTTCTCCATAGGAAAAGCTCAGCACAGGTATTT
CAGGTAGAGAGGAATGACTAGGCTCTGATCTCCCACGTAGAGGCTCCAGCCCCAGCCCTGACCC
TTAGCATCATACCGTGCAAGCATTCCATTCAGTTCCTAAGCTCCCTGTCTTAACCTGGGACCAG
CCTGGAACCTGACATATGAGGGCTCTGTGCTGACCTTATTCTTGAGGAAGGGAACAGATTTCGA
AATCTTGTGGATTGACATTCTAGACCTAGATCAAGTGAGACTTAGATCCTCACCCTTGAGAAGA
TCTTGCCTTTTCTGCCTTGAGGGCCAATTTGGGGGAGATGATAGGGATTAGTGTAGACCCAGTC
TAGGTACCCCAATACTTCCCTTCAAGTTGTAGAAAATGGTAAAGAAAGGGCGTGTCCAGGCTGT
TTATCAGTCCAGGGAAAAATAGAAATCTCCCTAAAAGGCAGGGACCTGAAGGAATGGTGGCAAA
AGTATATTGTATCGCTCATTTGTTTGTGAATTTTTTATTGAACCCACCTACTCAAAAGCTAGGT
CACCCCGGACCTCTGTCCCATCCACACCGTTCTCCATCTGGGGGACTAACCCTGTTTCAGAGCC
AGTCCTTAGAGCCAGTCCCTACCTACTAGTCCCATCCATGCCACCTACATCCAAGGTCTTCAGC
TTTAAACTGCTGGGGCCAGGCCCCAAGGAGGGTTTACTGAGGGGTCCGTAGGTTTGACTAAAAT
AATAAATGCTAGGCGTGTTTGATGCGCTTTTAACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_017602063 ⟹ XP_017457552

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,741,472 (-)	NCBI
Rnor_6.0	X	15,574,579 - 15,587,150 (-)	NCBI

Sequence:

show sequence

ACCTGCTTAGATAGCTTACAGGAGTAGTGGGAGTGCTTTGAGGAGGGCAGAGTCATATTTGGGG
GGCTCTTTGTTGGGTCTAGCGGAGCAGATTGTGGAGTATACAGAAACTGGTCTGCTGTCTTTGA
ACTTGGGAAACTGATTAGAAGCTGAATTGGGGATTGTGAGTCGGAGCGGAGGGATGAATTTGAG
GGCACACTGTCAGGTGAGACCCTGATTTTAAGGAAATCCTGGGATTCTCCCCTCCTTCAGTGTG
GGGAAAAAAGAATCCCGGGAGGCAAAGGTGTTTTGGGGGGCACCTGGTGATTCCCAGTAGCTGG
TTCTGTGTTTGGAAATAACATGAACCTAAGGAGTTAGGGGGAGGTCTCAGATATGCCGGGAGTG
TGTGTGTGTGAATAATGGAGCGAAGCAACTTGACGACCCCAATCGGTTCACTGTTGCTACCCCG
CTCACCCGGGGTCTGTACAGAAAGGCCGAGATAGTGGAAACCCCTCTTGTCTTATCCAATGGGT
GCTTAAATTTGAGGCAGGCGGGCAGACTGGAAAGATACAGTTCACTTTTTAGGCGCGGGGGAGG
GTGTTGGGGGGAGGCCTCAAGCCTTATATGGGAACCCAGAGGAGGGTCTTGTTTCTGTTGCCAC
TCGCCCTGGCCTCGCAGCTGGCCCTGCCCACTCCCTACCCACACACCCCCTCTTCCTTTTATTT
CGCCCTCCCAGCCGGTCTTTCAGTTCCCGGGTGTAATCTTGAATCAGTCTCTAGAGCTGGACCT
GAATTCTTTGCTTCCGGAATCCGGGATTGTTGCTGACATCGAGTTAGAAAACATCCTTGATCCT
GACAGCTTCTACGAGCTCAAAAGCCAGCCTCTATCCCTTCGCTCCAGGCCACTCCGACCACCCC
AGCTACACTCTCTGCATCGTCTTCTGCAGGGGGCTCCCGGACCCCTGCCATGTCATCCTCCTCC
TCACGGGTCTTGCTGCGGCAGCAGCTTATGAGGGCCCAGGCACAGGAACAGGAGAGGCGTGAGC
GGCGGGAACAGGCAGCGGCCGCTCCGTTCCCCAGTCCTGCACCTGCCTCACCAGCCATCTCAGT
GATTGGTGTGTCTGCTGGTGGCCACACATTGAGTCGTCCACCCCCTGCTCAGGTGCCCAGGGAG
GTACTCAAGGTTCAAACCCACCTAGAGAACCCTACACGCTACCACTTGCAGCAAGCTCGCCGGC
AACAGGTGAAACAGTACTTGTCTACTACACTTGGGCCCAAGCTGGCTTCACAGGCCCTCACCCC
ACCACCAGGGCCTTCCAGTGCTCAGCCACTTCCTGCCCCTGAAACTGCTCATGCCACCGGCCCT
ACAGGCAGTGCTCCTAACAGCCCCATGGCATTGCTCACCATTGGGTCCAGCTCAGAGAAGGAGA
TTGATGATGTCATTGATGAGATCATCAGCCTGGAGTCCAGTTACAACGATGAGATGCTCAGCTA
TCTTCCTGGAGGCACTGCAGGGCTGCAGCTCCCCAGCACGCTGCCTGTGTCAGGAAATCTACTT
GATGTGTACAGCAGTCAGGGTGTGGCCACCCCAGCCATCACTGTCAGCAATTCCTGTCCTGCTG
AGCTGCCTAACATCAAACGGGAGATCTCGGAAACCGAGGCAAAGGCCCTTTTGAAGGAGCGACA
GAAGAAAGACAATCACAACCTAATTGAACGACGCAGGCGATTCAACATTAACGATAGGATCAAA
GAGCTGGGCACCCTCATCCCCAAGTCCAATGATCCGGAGATGCGCTGGAACAAGGGAACCATCC
TGAAGGCATCTGTGGATTATATCCGCAAATTACAGAAGGAACAGCAGCGCTCTAAAGACCTGGA
GAGCCGGCAGCGGTCCCTGGAGCAAGCCAACCGAAGCCTGCAGCTCCGAATTCAGGAGCTGGAA
CTACAGGCACAGATCCATGGTCTGCCGGTCCCTCCCAACCCAGGACTGCTCTCCCTAGCCACCA
GCTCGGTCTCTGACAGCCTCAAGCCGGAACAACTGGACATTGAGGAGGAGGGCAGGCCAAGCAC
AACAACATTTCATGTGTCAGGGGGGCCTACCCAGAATGCTCCTCCACAACAGCCTCCGGCACCG
CCTTCGGATACCCTTCTGGACCTGCACTTTCCCAGCGACCACTTGGGGGACCTGGGGGACCCCT
TCCACCTAGGGCTAGAGGACATTCTGATGGAGGAGGAGGGGATGGTGGGAGGACTGTCAGGGGG
TGCCCTGTCCCCACTGCGGGCTGCTTCCGACCCCCTGCTTTCTTCAGTATCCCCGGCTGTTTCC
AAGTCGAGCAGCCGGCGCAGCAGCTTCAGCATGGAAGACGAGTCCTGATCAGGCCTCACTCCTC
CCCTCGGGCTTCCCCACCCAGGGAAGGAGAACAAGCCTGGATGAGACCCTACCCTCCTGTGACA
CTGTCCTGTCCAGGAGATCTGGGGAACGAGGAGTTGCAATCAGGCCCCAACCCTGTACTAGGCC
AGGAGGAGGAATCAGGTGAGGCCCTGCCACTTTTCCAGAGGACCTGCCTTGTGCAGGTATTTGT
GAGGGAGAAGGCAGGGGAGAACTGGGAAAGGTCAGTTCATCACTTGAGCATCATAGCCTTACCC
CTTGTCCCTGGTCCTACTCCTGCCTCGGTGAGGGAAGGAGGCAGGACAAGGTATGCCCCTGGTC
ACTAGGGACCCTTATAAACCTGTTTATAAAGGTCTCCCAAGGAAAGGAGATGCCAGGGTGCCGC
TCCATTCCTTCTCTGGGAAGTGCCAGGCCAGCTTTTCCTGGCACTGGAGGAAGAAAAGTAAAAA
TAGTGTCTCACCCCTGGAGGGTTGATCCCTATCCCTACCTTATGACCCCTGACTTGTTCTGGCA
AGGAACAGAAGTAAGGATGTGATCCAGCCCATTGCCCTGGGCCCCATCCCTTCTCCATAGGAAA
AGCTCAGCACAGGTATTTCAGGTAGAGAGGAATGACTAGGCTCTGATCTCCCACGTAGAGGCTC
CAGCCCCAGCCCTGACCCTTAGCATCATACCGTGCAAGCATTCCATTCAGTTCCTAAGCTCCCT
GTCTTAACCTGGGACCAGCCTGGAACCTGACATATGAGGGCTCTGTGCTGACCTTATTCTTGAG
GAAGGGAACAGATTTCGAAATCTTGTGGATTGACATTCTAGACCTAGATCAAGTGAGACTTAGA
TCCTCACCCTTGAGAAGATCTTGCCTTTTCTGCCTTGAGGGCCAATTTGGGGGAGATGATAGGG
ATTAGTGTAGACCCAGTCTAGGTACCCCAATACTTCCCTTCAAGTTGTAGAAAATGGTAAAGAA
AGGGCGTGTCCAGGCTGTTTATCAGTCCAGGGAAAAATAGAAATCTCCCTAAAAGGCAGGGACC
TGAAGGAATGGTGGCAAAAGTATATTGTATCGCTCATTTGTTTGTGAATTTTTTATTGAACCCA
CCTACTCAAAAGCTAGGTCACCCCGGACCTCTGTCCCATCCACACCGTTCTCCATCTGGGGGAC
TAACCCTGTTTCAGAGCCAGTCCTTAGAGCCAGTCCCTACCTACTAGTCCCATCCATGCCACCT
ACATCCAAGGTCTTCAGCTTTAAACTGCTGGGGCCAGGCCCCAAGGAGGGTTTACTGAGGGGTC
CGTAGGTTTGACTAAAATAATAAATGCTAGGCGTGTTTGATGCGCTTTTAACTTTGGCA

hide sequence

RefSeq Acc Id:

XM_039099775 ⟹ XP_038955703

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,742,249 (-)	NCBI

RefSeq Acc Id:

XM_039099776 ⟹ XP_038955704

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,741,447 (-)	NCBI

RefSeq Acc Id:

XM_039099777 ⟹ XP_038955705

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,741,415 (-)	NCBI

RefSeq Acc Id:

XM_039099778 ⟹ XP_038955706

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,735,087 - 14,742,764 (-)	NCBI

RefSeq Acc Id:

XM_039099779 ⟹ XP_038955707

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,735,085 - 14,742,764 (-)	NCBI

RefSeq Acc Id:

XR_005497983

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,742,764 (-)	NCBI

RefSeq Acc Id:

XR_005497984

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	14,729,549 - 14,742,764 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258156	(Get FASTA)	NCBI Sequence Viewer
	XP_006256783	(Get FASTA)	NCBI Sequence Viewer
	XP_006256784	(Get FASTA)	NCBI Sequence Viewer
	XP_006256785	(Get FASTA)	NCBI Sequence Viewer
	XP_006256789	(Get FASTA)	NCBI Sequence Viewer
	XP_006256790	(Get FASTA)	NCBI Sequence Viewer
	XP_006256791	(Get FASTA)	NCBI Sequence Viewer
	XP_017457552	(Get FASTA)	NCBI Sequence Viewer
	XP_038955703	(Get FASTA)	NCBI Sequence Viewer
	XP_038955704	(Get FASTA)	NCBI Sequence Viewer
	XP_038955705	(Get FASTA)	NCBI Sequence Viewer
	XP_038955706	(Get FASTA)	NCBI Sequence Viewer
	XP_038955707	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83831	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001258156 ⟸ NM_001271227

- UniProtKB:

D3ZAW6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSHATETARDGVEASAEGPRAVFVLLEERRPADSAQLLSLNSLLPESGIVADIELENILDPDSF
YELKSQPLSLRSSLPISLQATPTTPATLSASSSAGGSRTPAMSSSSSRVLLRQQLMRAQAQEQE
RRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPAQVPREVLKVQTHLENPTRYHLQQ
ARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETAHATGPTGSAPNSPMALLTIGSSS
EKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPVSGNLLDVYSSQGVATPAITVSNS
CPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPEMRWNK
GTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLRIQELELQAQIHGLPVPPNPGLLS
LATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQQPPAPPSDTLLDLHFPSDHLGDL
GDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSVSPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

XP_006256787 ⟸ XM_006256725

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPA
QVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETA
HATGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPV
SGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNI
NDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLR
IQELELQAQIHGLPVPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQ
QPPAPPSDTLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSV
SPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

XP_006256790 ⟸ XM_006256728

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPA
QVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETA
HATGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPV
SGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNI
NDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLR
IQELELQAQIHGLPVPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQ
QPPAPPSDTLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSV
SPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

XP_006256784 ⟸ XM_006256722

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSHATETARDGVEASAEGPRAVFVLLEERRPADSAQLLSLNSLLPESGIVADIELENILDPDSF
YELKSQPLSLRSSLPISLQATPTTPATLSASSSAGGSRTPAMSSSSSRVLLRQQLMRAQAQEQE
RRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPAQVPREVLKVQTHLENPTRYHLQQ
ARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETAHATGPTGSAPNSPMALLTIGSSS
EKELPVSGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIER
RRRFNINDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQAN
RSLQLRIQELELQAQIHGLPVPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPT
QNAPPQQPPAPPSDTLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASD
PLLSSVSPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

XP_006256785 ⟸ XM_006256723

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPA
QVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETA
HATGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPV
SGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNI
NDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLR
IQELELQAQIHGLPVPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQ
QPPAPPSDTLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSV
SPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

XP_006256791 ⟸ XM_006256729

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPA
QVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETA
HATGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPV
SGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNI
NDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLR
IQELELQAQIHGLPVPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQ
QPPAPPSDTLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSV
SPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

XP_006256788 ⟸ XM_006256726

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPA
QVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETA
HATGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPV
SGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNI
NDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLR
IQELELQAQIHGLPVPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQ
QPPAPPSDTLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSV
SPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

XP_006256789 ⟸ XM_006256727

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPA
QVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETA
HATGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPV
SGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNI
NDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLR
IQELELQAQIHGLPVPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQ
QPPAPPSDTLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSV
SPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

XP_006256783 ⟸ XM_006256721

- Peptide Label:

isoform X1

- Sequence:

show sequence

MCSGVLNSLLPESGIVADIELENILDPDSFYELKSQPLSLRSSLPISLQATPTTPATLSASSSA
GGSRTPAMSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHT
LSRPPPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQP
LPAPETAHATGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQ
LPSTLPVSGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIE
RRRRFNINDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQA
NRSLQLRIQELELQAQIHGLPVPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGP
TQNAPPQQPPAPPSDTLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAAS
DPLLSSVSPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

XP_017457552 ⟸ XM_017602063

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPA
QVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETA
HATGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPV
SGNLLDVYSSQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNI
NDRIKELGTLIPKSNDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLR
IQELELQAQIHGLPVPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQ
QPPAPPSDTLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSV
SPAVSKSSSRRSSFSMEDES

hide sequence

RefSeq Acc Id:

ENSRNOP00000012830 ⟸ ENSRNOT00000012829

RefSeq Acc Id:	XP_038955703 ⟸ XM_039099775
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038955704 ⟸ XM_039099776
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038955705 ⟸ XM_039099777
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038955707 ⟸ XM_039099779
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038955706 ⟸ XM_039099778
- Peptide Label:	isoform X4

Protein Domains

bHLH

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
X	16362179	16362180	T	C	snv	DOB/Oda (KyushuU)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559642	AgrOrtholog
Ensembl Genes	ENSRNOG00000009605	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000012830	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012829	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
InterPro	bHLH_ZIP_TF_MiT/TFE	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	HLH_dom	UniProtKB/TrEMBL
	MiT/TFE_N	UniProtKB/TrEMBL
	TFE3	UniProtKB/TrEMBL
KEGG Report	rno:317376	UniProtKB/TrEMBL
NCBI Gene	317376	ENTREZGENE
PANTHER	PTHR45776:SF3	UniProtKB/TrEMBL
Pfam	DUF3371	UniProtKB/TrEMBL
	HLH	UniProtKB/TrEMBL
	MITF_TFEB_C_3_N	UniProtKB/TrEMBL
PhenoGen	Tfe3	PhenoGen
PROSITE	HLH	UniProtKB/TrEMBL
SMART	HLH	UniProtKB/TrEMBL
Superfamily-SCOP	HLH_basic	UniProtKB/TrEMBL
UniProt	D3ZAW6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tcfe3	transcription factor E3	Tcfe3_predicted	transcription factor E3 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Tcfe3_predicted	transcription factor E3 (predicted)	RGD1559642_predicted	similar to Tcfe3 protein (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1559642_predicted	similar to Tcfe3 protein (predicted)	LOC317376	similar to Tcfe3 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC317376	similar to Tcfe3 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM