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ONTOLOGY REPORT - ANNOTATIONS

Term:positive regulation of vacuole organization
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Accession:GO:0044090 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a vacuole.
Synonyms:exact_synonym: positive regulation of vacuole organisation
 related_synonym: positive regulation of vacuole biogenesis


show annotations for term's descendants           Sort by:
positive regulation of vacuole organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 involved_in ISO (PMID:25139904) RGD PMID:25139904 NCBI chr 8:78,986,252...79,022,638
Ensembl chr 8:78,986,242...79,022,631 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA
IBA 		(PMID:21072319)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21072319 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:198,777,323...198,856,497
Ensembl chr 2:198,777,323...198,856,497 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO
IEA 		(PMID:30952800), (PMID:31271352)
GO_REF:0000107 		RGD
Ensembl		 PMID:30952800 PMID:31271352 GO_REF:0000107 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:212,971,844...212,991,528 		JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:33372336 RGD:407571673 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:149,391,390...149,598,319 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:62,727,291...62,828,629 		JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,731,650...86,747,002 		JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within ISO (PMID:37943659) RGD PMID:37943659 NCBI chr12:51,448,838...51,481,159
Ensembl chr12:51,449,140...51,480,667 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IEA 		(PMID:21072319)
GO_REF:0000107 		RGD
Ensembl		 PMID:21072319 GO_REF:0000107 NCBI chr 2:198,777,323...198,856,497
Ensembl chr 2:198,777,323...198,856,497 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO
IEA 		(PMID:25484098)
GO_REF:0000107 		RGD
Ensembl		 PMID:25484098 GO_REF:0000107 NCBI chr 3:36,621,042...36,661,932
Ensembl chr 3:36,621,042...36,661,825 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) RGD PMID:33783314 NCBI chr 6:127,647,389...127,649,324
Ensembl chr 6:127,613,488...127,669,324 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr17:86,405,080...86,576,597
Ensembl chr17:86,405,081...86,576,430 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:83,197,287...83,231,292 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA 		(PMID:25578879)
GO_REF:0000107 		RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 7:64,905,322...64,920,380
Ensembl chr 7:64,905,328...64,920,373 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
IEA
IBA 		(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033 		RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:41,908,051...41,981,611 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:25495476)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:99,288,984...99,362,817
Ensembl chr13:99,288,647...99,361,053 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA 		(PMID:24056301)
GO_REF:0000107 		RGD
Ensembl		 PMID:24056301 GO_REF:0000107 NCBI chr13:30,588,036...30,624,199
Ensembl chr13:33,140,835...33,176,998 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA 		(PMID:21068542)
GO_REF:0000107 		RGD
Ensembl		 PMID:21068542 GO_REF:0000107 NCBI chr 2:236,411,194...236,445,225
Ensembl chr 2:236,410,436...236,445,140 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO
IEA 		(PMID:29437695)
GO_REF:0000107 		RGD
Ensembl		 PMID:29437695 GO_REF:0000107 NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:46,965,498...46,991,516 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO
IEA 		(PMID:32513819)
GO_REF:0000107 		RGD
Ensembl		 PMID:32513819 GO_REF:0000107 NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:79,478,912...79,607,052 		JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA
IEA 		(PMID:32513819), (PMID:33468622)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:32513819 PMID:33468622 GO_REF:0000033 GO_REF:0000107 NCBI chr11:80,965,965...81,023,234
Ensembl chr11:80,965,967...81,028,448 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO
IEA 		(PMID:32513819)
GO_REF:0000107 		RGD
Ensembl		 PMID:32513819 GO_REF:0000107 NCBI chr 2:208,528,041...208,612,597
Ensembl chr 2:208,528,049...208,613,075 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483
Ensembl chr 5:84,014,803...84,042,748 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:51,511,492...51,537,746 		JBrowse link
G Usp33 ubiquitin specific peptidase 33 involved_in ISO (PMID:24056301) RGD PMID:24056301 NCBI chr 2:241,283,209...241,328,479
Ensembl chr 2:243,943,175...243,988,424 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS
IEA 		(PMID:31271352)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:17,448,207...17,454,117 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO
IEA 		(PMID:31271352)
GO_REF:0000107 		RGD
Ensembl		 PMID:31271352 GO_REF:0000107 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:95,042,441...95,079,293 		JBrowse link
positive regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grn granulin precursor involved_in ISS
ISO 		GO_REF:0000024
(PMID:28073925) 		UniProt
RGD		 PMID:28073925 GO_REF:0000024 NCBI chr10:87,887,834...87,893,938
Ensembl chr10:87,886,122...87,893,936 		JBrowse link
G Irgm immunity-related GTPase M involved_in
acts_upstream_of_or_within 		ISO (PMID:32753672)
(PMID:25720963) 		RGD PMID:25720963 PMID:32753672 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,732,961...33,743,228 		JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:25720963)
(PMID:32753672)
GO_REF:0000107 		RGD
Ensembl		 PMID:25720963 PMID:32753672 GO_REF:0000107 NCBI chr12:6,357,851...6,372,151
Ensembl chr12:6,357,807...6,372,151 		JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:25720963), (PMID:32753672)
GO_REF:0000107 		RGD
Ensembl		 PMID:25720963 PMID:32753672 GO_REF:0000107 NCBI chr15:3,809,182...3,854,204
Ensembl chr15:3,809,262...3,854,203 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      positive regulation of cellular process 6468
        positive regulation of cellular component organization 1337
          positive regulation of organelle organization 556
            positive regulation of vacuole organization 29
              positive regulation of autophagosome assembly 24
              positive regulation of lysosome organization 4
              positive regulation of vacuole fusion, non-autophagic 0
Path 2
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      cellular component organization or biogenesis 7219
        cellular component organization 6928
          organelle organization 3741
            vacuole organization 260
              regulation of vacuole organization 62
                positive regulation of vacuole organization 29
                  positive regulation of autophagosome assembly 24
                  positive regulation of lysosome organization 4
                  positive regulation of vacuole fusion, non-autophagic 0
paths to the root