ONTOLOGY REPORT - ANNOTATIONS
Term: dendritic spine development
Accession: GO:0060996
browse the term
Definition: The process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission.
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Acsl4
acyl-CoA synthetase long-chain family member 4
IMP
RGD
PMID:19166906
RGD:2312805
NCBI chr X:110,739,633...110,803,416
Ensembl chr X:105,942,799...106,006,427
G
Arf4
ARF GTPase 4
acts_upstream_of_or_within
ISO IEA
(PMID:23050017) GO_REF:0000107 MGI:3879059 (PMID:23050017)
RGD Ensembl
PMID:23050017
GO_REF:0000107
NCBI chr16:1,903,238...1,920,012
Ensembl chr16:1,896,546...1,913,261
G
Arid1b
AT-rich interaction domain 1B
acts_upstream_of_or_within
ISO
(PMID:26937011)
RGD
PMID:26937011
NCBI chr 1:47,973,199...48,328,793
Ensembl chr 1:45,563,623...45,923,493
G
Camk2a
calcium/calmodulin-dependent protein kinase II alpha
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:28130356)
UniProt Ensembl RGD
PMID:28130356
GO_REF:0000024 GO_REF:0000107
NCBI chr18:56,648,779...56,711,505
Ensembl chr18:54,378,784...54,438,994
G
Cntnap2
contactin associated protein 2
involved_in
ISO
MGI:2677631 (PMID:23074245), (PMID:25951243)
RGD
PMID:23074245 PMID:25951243
NCBI chr 4:75,109,358...77,366,258
Ensembl chr 4:74,109,472...76,362,027
G
Dscam
DS cell adhesion molecule
acts_upstream_of_or_within
ISO IEA
(PMID:34848499) GO_REF:0000107
RGD Ensembl
PMID:34848499
GO_REF:0000107
NCBI chr11:49,391,385...49,976,861
Ensembl chr11:35,926,896...36,507,415
G
Ephb1
Eph receptor B1
involved_in acts_upstream_of_or_within
ISS IEA ISO IGI
GO_REF:0000024 GO_REF:0000107 (PMID:14691139) PMID:17310244
UniProt Ensembl RGD
PMID:14691139 PMID:17310244 PMID:17310244
GO_REF:0000024 GO_REF:0000107, RGD:10047256 , RGD:10047256
NCBI chr 8:111,386,432...111,823,759
Ensembl chr 8:102,507,549...102,944,839
G
Ephb2
Eph receptor B2
involved_in
ISO IEA
(PMID:14691139) GO_REF:0000107
RGD Ensembl
PMID:14691139
GO_REF:0000107
NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059
G
Ephb3
Eph receptor B3
involved_in
ISO IEA
(PMID:14691139) GO_REF:0000107
RGD Ensembl
PMID:14691139
GO_REF:0000107
NCBI chr11:93,345,098...93,363,775
Ensembl chr11:79,840,668...79,859,370
G
Fmr1
fragile X messenger ribonucleoprotein 1
acts_upstream_of_or_within
ISO
MGI:1339656|MGI:1339975|MGI:1339984|MGI:1917834 (PMID:23509247)
RGD
PMID:23509247
NCBI chr X:152,284,857...152,322,686
Ensembl chr X:147,240,301...147,278,050
G
Git1
GIT ArfGAP 1
acts_upstream_of_or_within
IGI
PMID:17310244
MGI
PMID:17310244 PMID:17310244
RGD:10047256 , RGD:10047256
NCBI chr10:62,840,165...62,854,508
Ensembl chr10:62,342,299...62,356,373
G
Iqsec1
IQ motif and Sec7 domain ArfGEF 1
involved_in
ISO
(PMID:31607425)
RGD
PMID:31607425
NCBI chr 4:124,725,917...125,045,351
Ensembl chr 4:123,168,719...123,488,172
G
Nck2
NCK adaptor protein 2
acts_upstream_of_or_within
IGI
PMID:17310244
MGI
PMID:17310244 PMID:17310244
RGD:10047256 , RGD:10047256
NCBI chr 9:53,206,006...53,332,417
Ensembl chr 9:45,714,883...45,840,307
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO IEA
MGI:4414794 (PMID:30936556) GO_REF:0000107
RGD Ensembl
PMID:30936556
GO_REF:0000107
NCBI chr X:8,379,569...8,404,019
Ensembl chr X:5,796,487...5,820,934
G
Pak1
p21 (RAC1) activated kinase 1
acts_upstream_of_or_within
ISO
MGI:95564 (PMID:23509247)
RGD
PMID:23509247
NCBI chr 1:161,522,399...161,637,623
Ensembl chr 1:152,111,188...152,226,383
G
Pak2
p21 (RAC1) activated kinase 2
acts_upstream_of_or_within
ISO IEA
MGI:95564 (PMID:23509247) GO_REF:0000107
RGD Ensembl
PMID:23509247
GO_REF:0000107
NCBI chr11:82,212,896...82,273,803
Ensembl chr11:68,707,969...68,768,816
G
Pak3
p21 (RAC1) activated kinase 3
acts_upstream_of_or_within
ISO
MGI:95564 (PMID:23509247)
RGD
PMID:23509247
NCBI chr X:111,912,967...112,171,037
Ensembl chr X:107,260,898...107,368,314
G
Pak4
p21 (RAC1) activated kinase 4
acts_upstream_of_or_within
ISO IEA
MGI:95564 (PMID:23509247) GO_REF:0000107
RGD Ensembl
PMID:23509247
GO_REF:0000107
NCBI chr 1:92,977,437...93,016,721
Ensembl chr 1:83,849,904...83,859,413
G
Slc12a5
solute carrier family 12 member 5
involved_in
IDA IEA ISO
PMID:22345354 GO_REF:0000107 (PMID:24668262)
Ensembl RGD
PMID:24668262 PMID:22345354
GO_REF:0000107, RGD:10449516
NCBI chr 3:174,115,833...174,155,112
Ensembl chr 3:153,696,517...153,735,765
G
Slc9a6
solute carrier family 9 member A6
acts_upstream_of_or_within
ISO
MGI:3604561 (PMID:24035762)
RGD
PMID:24035762
NCBI chr X:139,468,045...139,524,111
Ensembl chr X:134,420,756...134,485,375
G
Spire1
spire-type actin nucleation factor 1
acts_upstream_of_or_within
ISO
MGI:4310183 (PMID:24345451)
RGD
PMID:24345451
NCBI chr18:63,311,800...63,441,545
Ensembl chr18:61,041,290...61,171,899
G
Srgap2
SLIT-ROBO Rho GTPase activating protein 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:22559944)
UniProt Ensembl RGD
PMID:22559944
GO_REF:0000024 GO_REF:0000107
NCBI chr13:45,298,192...45,519,330
Ensembl chr13:42,745,947...42,967,058
G
Uba6
ubiquitin-like modifier activating enzyme 6
acts_upstream_of_or_within
ISO
MGI:2176173|MGI:5509054 (PMID:23499007)
RGD
PMID:23499007
NCBI chr14:22,238,832...22,302,650
Ensembl chr14:21,884,039...21,947,857
G
Ulk4
unc-51 like kinase 4
acts_upstream_of_or_within
ISO
(PMID:35522199)
RGD
PMID:35522199
NCBI chr 8:129,548,431...129,843,555
Ensembl chr 8:120,670,866...120,966,924
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Cdc42
cell division cycle 42
involved_in
ISS ISO
GO_REF:0000024 (PMID:25851601)
UniProt RGD
PMID:25851601
GO_REF:0000024
NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:149,553,724...149,593,111
G
Ctnnd2
catenin delta 2
involved_in
ISO IEA
(PMID:25807484) GO_REF:0000107
RGD Ensembl
PMID:25807484
GO_REF:0000107
NCBI chr 2:82,879,469...83,727,409
Ensembl chr 2:81,167,117...82,015,764
G
Dip2a
disco-interacting protein 2 homolog A
involved_in
ISO
(PMID:31600191)
RGD
PMID:31600191
NCBI chr20:12,284,037...12,373,519
Ensembl chr20:12,284,654...12,370,217
G
Dlg4
discs large MAGUK scaffold protein 4
involved_in
IMP ISO IEA
PMID:21525273 (PMID:20952458) GO_REF:0000107
RGD Ensembl
PMID:20952458 PMID:21525273
GO_REF:0000107, RGD:8554095
NCBI chr10:55,239,397...55,267,780
Ensembl chr10:54,739,470...54,767,153
G
Dock10
dedicator of cytokinesis 10
involved_in
ISO IBA
(PMID:25851601) GO_REF:0000033
RGD GO_Central
PMID:25851601
GO_REF:0000033
NCBI chr 9:89,291,936...89,549,871
Ensembl chr 9:81,843,604...82,101,525
G
Dvl1
dishevelled segment polarity protein 1
involved_in
IGI
PMID:21670302
ParkinsonsUK-UCL
PMID:21670302
RGD:10449514
NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:166,456,686...166,468,664
G
Epha5
EPH receptor A5
involved_in
IDA
PMID:20824214
UniProt
PMID:20824214
RGD:8554330
NCBI chr14:23,653,393...24,020,129
Ensembl chr14:23,653,393...24,017,317
G
Ephb1
Eph receptor B1
involved_in acts_upstream_of_or_within
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:14691139) (PMID:17310244)
UniProt Ensembl RGD
PMID:14691139 PMID:17310244
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:111,386,432...111,823,759
Ensembl chr 8:102,507,549...102,944,839
G
Ephb2
Eph receptor B2
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:17310244) GO_REF:0000107 (PMID:14691139)
RGD Ensembl
PMID:14691139 PMID:17310244
GO_REF:0000107
NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059
G
Ephb3
Eph receptor B3
involved_in
ISO IEA
(PMID:14691139) GO_REF:0000107
RGD Ensembl
PMID:14691139
GO_REF:0000107
NCBI chr11:93,345,098...93,363,775
Ensembl chr11:79,840,668...79,859,370
G
Hdac6
histone deacetylase 6
acts_upstream_of_or_within
ISO IEA
(PMID:24113571) GO_REF:0000107
RGD Ensembl
PMID:24113571
GO_REF:0000107
NCBI chr X:17,222,538...17,244,373
Ensembl chr X:14,551,044...14,572,441
G
Myo5b
myosin Vb
IMP
RGD
PMID:18984164
RGD:11533643
NCBI chr18:70,313,717...70,613,918
Ensembl chr18:68,038,759...68,338,745
G
Pak3
p21 (RAC1) activated kinase 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:25851601)
UniProt RGD
PMID:25851601
GO_REF:0000024
NCBI chr X:111,912,967...112,171,037
Ensembl chr X:107,260,898...107,368,314
G
Prmt3
protein arginine methyltransferase 3
IMP
RGD
PMID:20647003
RGD:9491824
NCBI chr 1:108,628,899...108,718,803
Ensembl chr 1:99,492,724...99,579,435
G
Pten
phosphatase and tensin homolog
involved_in
ISO
(PMID:18082964), (PMID:21411674)
RGD
PMID:18082964 PMID:21411674
NCBI chr 1:240,043,707...240,110,330
Ensembl chr 1:230,630,338...230,696,838
G
Septin7
septin 7
acts_upstream_of_or_within
ISO
(PMID:24113571)
RGD
PMID:24113571
NCBI chr 8:31,995,597...32,059,069
Ensembl chr 8:23,716,030...23,783,243
G
Shank1
SH3 and multiple ankyrin repeat domains 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:18272690)
BHF-UCL Ensembl RGD
PMID:18272690
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:103,944,416...103,993,887
Ensembl chr 1:94,808,276...94,855,824
G
Shank3
SH3 and multiple ankyrin repeat domains 3
involved_in acts_upstream_of_or_within
ISS ISO IEA
GO_REF:0000024 (PMID:21167025), (PMID:21423165), (PMID:21558424) MGI:5056336 (PMID:21558424) GO_REF:0000107
BHF-UCL RGD Ensembl
PMID:21167025 PMID:21423165 PMID:21558424
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:122,448,323...122,518,623
Ensembl chr 7:120,570,402...120,630,374
G
Wasl
WASP like actin nucleation promoting factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:25851601)
UniProt RGD
PMID:25851601
GO_REF:0000024
NCBI chr 4:54,049,081...54,097,653
Ensembl chr 4:53,083,536...53,132,022
G
Wnt7a
Wnt family member 7A
involved_in
ISO IEA
(PMID:21670302) GO_REF:0000107 UniProtKB:Q9WVB9 (PMID:21670302)
RGD Ensembl
PMID:21670302
GO_REF:0000107
NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981
G
Zfp365
zinc finger protein 365
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:25983680) GO_REF:0000107
UniProt RGD Ensembl
PMID:25983680
GO_REF:0000024 GO_REF:0000107
NCBI chr20:20,666,240...20,689,734
Ensembl chr20:20,666,240...20,691,238
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Apoe
apolipoprotein E
acts_upstream_of_or_within
ISO
(PMID:24328732)
RGD
PMID:24328732
NCBI chr 1:88,481,889...88,485,816
Ensembl chr 1:79,353,916...79,357,932
G
Asap1
ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
acts_upstream_of_or_within
ISO
(PMID:23050017)
RGD
PMID:23050017
NCBI chr 7:95,786,130...96,093,111
Ensembl chr 7:95,787,818...96,092,754
G
Fstl4
follistatin-like 4
acts_upstream_of_or_within
ISO IEA
(PMID:24573299) GO_REF:0000107
RGD Ensembl
PMID:24573299
GO_REF:0000107
NCBI chr10:37,412,288...37,845,405
Ensembl chr10:36,911,420...37,338,588
G
Grin3a
glutamate ionotropic receptor NMDA type subunit 3A
involved_in
IDA
PMID:24297929
UniProt
PMID:24297929
RGD:42721994
NCBI chr 5:68,802,333...69,001,880
Ensembl chr 5:64,009,980...64,206,085
G
Hdac2
histone deacetylase 2
IMP
RGD
PMID:23485013
RGD:9590265
NCBI chr20:42,101,815...42,126,486
Ensembl chr20:40,548,250...40,571,609
G
Mecp2
methyl CpG binding protein 2
IMP
RGD
PMID:24636259
RGD:12789709
NCBI chr X:156,932,481...156,995,981
Ensembl chr X:151,789,930...151,844,689
G
Ngfr
nerve growth factor receptor
IMP
RGD
PMID:22548193
RGD:10413901
NCBI chr10:81,012,077...81,030,305
Ensembl chr10:80,515,299...80,533,518
G
Plk2
polo-like kinase 2
IMP
RGD
PMID:18723513
RGD:7241135
NCBI chr 2:43,702,536...43,708,305
Ensembl chr 2:41,969,176...41,974,947
G
Ptprs
protein tyrosine phosphatase, receptor type, S
involved_in
ISS ISO
GO_REF:0000024 (PMID:22519304)
UniProt RGD
PMID:22519304
GO_REF:0000024
NCBI chr 9:1,332,558...1,394,161
Ensembl chr 9:1,245,410...1,306,947
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Dnm3
dynamin 3
IDA
RGD
PMID:17880892
RGD:8553820
NCBI chr13:76,892,381...77,371,346
Ensembl chr13:74,359,213...74,838,108
G
Dtnbp1
dystrobrevin binding protein 1
IMP IDA
RGD
PMID:20531346 PMID:20531346
RGD:11251757 , RGD:11251757
NCBI chr17:19,891,313...19,982,770
Ensembl chr17:19,685,215...19,776,661
G
Efna1
ephrin A1
involved_in
ISS ISO
GO_REF:0000024 (PMID:17143272)
UniProt RGD
PMID:17143272
GO_REF:0000024
NCBI chr 2:176,979,434...176,988,675
Ensembl chr 2:174,681,682...174,690,866
G
Ngef
neuronal guanine nucleotide exchange factor
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:17143272)
UniProt Ensembl RGD
PMID:17143272
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:95,594,823...95,692,381
Ensembl chr 9:88,146,956...88,244,914
G
Nlgn1
neuroligin 1
involved_in
ISO ISS
UniProtKB:Q99K10 (PMID:23143522) GO_REF:0000024
RGD BHF-UCL
PMID:23143522
GO_REF:0000024
NCBI chr 2:110,184,987...111,110,316
Ensembl chr 2:108,257,824...109,002,464
G
Nlgn3
neuroligin 3
involved_in
ISO
(PMID:21808020)
RGD
PMID:21808020
NCBI chr X:70,469,251...70,497,380
Ensembl chr X:66,429,458...66,451,876
G
Pten
phosphatase and tensin homolog
involved_in
ISO
(PMID:16675393)
RGD
PMID:16675393
NCBI chr 1:240,043,707...240,110,330
Ensembl chr 1:230,630,338...230,696,838
G
Twf1
twinfilin actin-binding protein 1
IMP
RGD
PMID:33963280
RGD:596938166
NCBI chr 7:127,595,210...127,607,821
Ensembl chr 7:125,716,015...125,727,894
G
Ube3a
ubiquitin protein ligase E3A
IMP
RGD
PMID:25867122
RGD:11079590
NCBI chr 1:119,204,244...119,297,097
Ensembl chr 1:110,070,480...110,157,250
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Apoe
apolipoprotein E
acts_upstream_of_or_within
ISO IEA
(PMID:24328732) GO_REF:0000107
RGD Ensembl
PMID:24328732
GO_REF:0000107
NCBI chr 1:88,481,889...88,485,816
Ensembl chr 1:79,353,916...79,357,932
G
Arf1
ARF GTPase 1
IMP
RGD
PMID:23889934
RGD:8553918
NCBI chr10:44,497,543...44,513,994
Ensembl chr10:43,997,986...44,014,434
G
C11h21orf91
similar to human chromosome 21 open reading frame 91
involved_in
ISO
(PMID:27404227)
RGD
PMID:27404227
NCBI chr11:30,716,034...30,749,292
Ensembl chr11:17,229,138...17,262,483
G
Camk1
calcium/calmodulin-dependent protein kinase I
involved_in
ISO IEA ISS
(PMID:18184567) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:18184567
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:148,036,843...148,047,675
Ensembl chr 4:146,481,196...146,492,081
G
Cdkl5
cyclin-dependent kinase-like 5
IMP
RGD
PMID:23671101
RGD:12791021
NCBI chr X:37,566,320...37,796,766
Ensembl chr X:33,821,257...33,986,582
G
Cfl1
cofilin 1
IMP
RGD
PMID:25723479
RGD:11570400
NCBI chr 1:212,227,124...212,230,656
Ensembl chr 1:202,786,627...202,817,587
G
Cpeb3
cytoplasmic polyadenylation element binding protein 3
involved_in
ISO
(PMID:22153079)
RGD
PMID:22153079
NCBI chr 1:244,161,690...244,343,765
Ensembl chr 1:234,751,733...234,931,560
G
Crebbp
CREB binding protein
IMP
RGD
PMID:32206715
RGD:126848802
NCBI chr10:11,842,307...11,968,266
Ensembl chr10:11,335,953...11,461,888
G
Dlg5
discs large MAGUK scaffold protein 5
involved_in
ISO IEA
(PMID:25232112) GO_REF:0000107
RGD Ensembl
PMID:25232112
GO_REF:0000107
NCBI chr15:125,287...237,334
Ensembl chr15:75,786...187,837
G
Eif4g2
eukaryotic translation initiation factor 4, gamma 2
IMP
RGD
PMID:22514323
RGD:10755512
NCBI chr 1:174,616,102...174,628,252
Ensembl chr 1:165,181,434...165,193,588
G
Fmr1
fragile X messenger ribonucleoprotein 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:18539120)
UniProt RGD
PMID:18539120
GO_REF:0000024
NCBI chr X:152,284,857...152,322,686
Ensembl chr X:147,240,301...147,278,050
G
Foxo6
forkhead box O6
involved_in
ISO IEA
(PMID:23222102) GO_REF:0000107
RGD Ensembl
PMID:23222102
GO_REF:0000107
NCBI chr 5:139,141,329...139,161,629
Ensembl chr 5:133,856,072...133,876,573
G
Grn
granulin precursor
IMP
RGD
PMID:21813674
RGD:5509044
NCBI chr10:87,887,834...87,893,938
Ensembl chr10:87,387,638...87,393,775
G
Hnrnpk
heterogeneous nuclear ribonucleoprotein K
IMP
RGD
PMID:24990929
RGD:10002784
NCBI chr17:6,269,302...6,280,429
Ensembl chr17:6,262,998...6,274,997
G
Il2
interleukin 2
IDA
RGD
PMID:20225203
RGD:5147914
NCBI chr 2:121,932,968...121,937,672
Ensembl chr 2:120,004,862...120,009,566
G
Itsn1
intersectin 1
IMP
RGD
PMID:19258322
RGD:13461864
NCBI chr11:44,464,515...44,646,598
Ensembl chr11:30,978,590...31,160,645
G
Llph
LLP homolog, long-term synaptic facilitation factor
involved_in
ISO IEA
(PMID:26961175) GO_REF:0000107
RGD Ensembl
PMID:26961175
GO_REF:0000107
NCBI chr 7:55,735,317...55,740,341
Ensembl chr 7:55,735,400...55,740,339
G
Lpar1
lysophosphatidic acid receptor 1
IDA
RGD
PMID:16638019
RGD:2317707
NCBI chr 5:78,024,139...78,147,071
Ensembl chr 5:73,229,625...73,369,895
G
Mapk6
mitogen-activated protein kinase 6
acts_upstream_of_or_within
ISO IEA
MGI:1333110 (PMID:22508986) GO_REF:0000107
RGD Ensembl
PMID:22508986
GO_REF:0000107
NCBI chr 8:85,027,141...85,050,236
Ensembl chr 8:76,146,690...76,169,720
G
Mapkapk5
MAPK activated protein kinase 5
acts_upstream_of_or_within
ISO
MGI:1354946|MGI:2680287 (PMID:22508986)
RGD
PMID:22508986
NCBI chr12:40,654,220...40,673,740
Ensembl chr12:34,994,092...35,013,052
G
Mecp2
methyl CpG binding protein 2
IMP
RGD
PMID:24188180
RGD:12789443
NCBI chr X:156,932,481...156,995,981
Ensembl chr X:151,789,930...151,844,689
G
Mtor
mechanistic target of rapamycin kinase
IMP
RGD
PMID:21683721
RGD:10040994
NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311
G
Neurl1
neuralized E3 ubiquitin protein ligase 1
involved_in
ISO IEA
(PMID:22153079) GO_REF:0000107
RGD Ensembl
PMID:22153079
GO_REF:0000107
NCBI chr 1:256,008,012...256,094,219
Ensembl chr 1:246,067,100...246,152,903
G
Nlgn1
neuroligin 1
involved_in
IMP ISO IDA
(PMID:23143522) PMID:17582332 UniProtKB:Q99K10 (PMID:23143522)
RGD
PMID:23143522 PMID:15681343 PMID:17582332
RGD:8553420 , RGD:8553502
NCBI chr 2:110,184,987...111,110,316
Ensembl chr 2:108,257,824...109,002,464
G
Nlgn2
neuroligin 2
IMP
RGD
PMID:15681343
RGD:8553420
NCBI chr10:55,042,175...55,056,578
Ensembl chr10:54,544,588...54,558,434
G
Nlgn3
neuroligin 3
IMP
RGD
PMID:15681343
RGD:8553420
NCBI chr X:70,469,251...70,497,380
Ensembl chr X:66,429,458...66,451,876
G
Nr3c1
nuclear receptor subfamily 3, group C, member 1
IMP
RGD
PMID:22509272
RGD:7174739
NCBI chr18:31,522,783...31,644,508
Ensembl chr18:31,271,681...31,393,375
G
Palm
paralemmin
involved_in
ISO
(PMID:18287537)
RGD
PMID:18287537
NCBI chr 7:10,537,252...10,563,346
Ensembl chr 7:9,886,643...9,912,555
G
Pbrm1
polybromo 1
IMP
RGD
PMID:31723243
RGD:150340632
NCBI chr16:6,219,933...6,319,336
Ensembl chr16:6,213,300...6,311,780
G
Ppp1r9a
protein phosphatase 1, regulatory subunit 9A
IMP
RGD
PMID:12052877
RGD:1299363
NCBI chr 4:33,936,949...34,258,927
Ensembl chr 4:33,024,450...33,286,907
G
Psen1
presenilin 1
involved_in
ISO IEA
(PMID:21951279) GO_REF:0000107
RGD Ensembl
PMID:21951279
GO_REF:0000107
NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650
G
Rac1
Rac family small GTPase 1
acts_upstream_of_or_within
ISO
MGI:2685385 (PMID:25865668)
RGD
PMID:25865668
NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251
G
Shank1
SH3 and multiple ankyrin repeat domains 1
involved_in
IDA
PMID:18287537
UniProt
PMID:18287537
RGD:8553517
NCBI chr 1:103,944,416...103,993,887
Ensembl chr 1:94,808,276...94,855,824
G
Shank3
SH3 and multiple ankyrin repeat domains 3
involved_in
ISS ISO IEA
PMID:21795692 (PMID:21795692) GO_REF:0000107
RGD Ensembl
PMID:21795692 PMID:21795692
GO_REF:0000107, RGD:7349315
NCBI chr 7:122,448,323...122,518,623
Ensembl chr 7:120,570,402...120,630,374
G
Tsc2
TSC complex subunit 2
IMP
RGD
PMID:16595860
RGD:11568665
NCBI chr10:14,125,679...14,160,317
Ensembl chr10:13,621,136...13,655,951
G
Zmynd8
zinc finger, MYND-type containing 8
IMP
RGD
PMID:24117785
RGD:8554267
NCBI chr 3:174,948,162...175,061,382
Ensembl chr 3:154,529,043...154,628,463
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Actr2
actin related protein 2
IMP
RGD
PMID:23441206
RGD:11530033
NCBI chr14:98,500,119...98,535,092
Ensembl chr14:94,296,443...94,340,524
G
Actr3
actin related protein 3
IMP
RGD
PMID:23441206
RGD:11530033
NCBI chr13:39,353,413...39,396,509
Ensembl chr13:36,800,093...36,844,124
G
Afdn
afadin, adherens junction formation factor
IMP
RGD
PMID:22948147
RGD:13838731
NCBI chr 1:58,041,065...58,170,505
Ensembl chr 1:53,905,373...54,034,216
G
Baiap2
BAR/IMD domain containing adaptor protein 2
IMP
RGD
PMID:15673667
RGD:9684988
NCBI chr10:105,721,371...105,788,549
Ensembl chr10:105,223,090...105,290,134
G
Camk2b
calcium/calmodulin-dependent protein kinase II beta
involved_in
IMP
PMID:12873385
UniProt
PMID:12873385
RGD:8553829
NCBI chr14:85,059,166...85,148,121
Ensembl chr14:80,845,238...80,933,994
G
Caprin1
cell cycle associated protein 1
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:20516077)
UniProt Ensembl RGD
PMID:20516077
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:110,606,489...110,685,408
Ensembl chr 3:90,153,620...90,230,502
G
Caprin2
caprin family member 2
involved_in
ISO
(PMID:20516077)
RGD
PMID:20516077
NCBI chr 4:181,806,105...181,860,754
Ensembl chr 4:181,806,575...181,860,830
G
Cask
calcium/calmodulin dependent serine protein kinase
IMP
RGD
PMID:18606847
RGD:11576294
NCBI chr X:11,572,328...11,915,831
Ensembl chr X:8,899,833...9,238,694
G
Cux2
cut-like homeobox 2
involved_in
ISO
(PMID:20510857)
RGD
PMID:20510857
NCBI chr12:40,168,402...40,368,303
Ensembl chr12:34,520,959...34,705,806
G
Dbn1
drebrin 1
involved_in
IMP IEA ISS IBA ISO
GO_REF:0000107 GO_REF:0000024 GO_REF:0000033 (PMID:25865831)
Ensembl UniProt GO_Central RGD
PMID:25865831 PMID:19174472
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:10398809
NCBI chr17:9,155,729...9,170,121
Ensembl chr17:9,150,659...9,164,984
G
Dbnl
drebrin-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr14:84,880,085...84,895,122
Ensembl chr14:80,666,124...80,681,155
G
Dhx36
DEAH-box helicase 36
involved_in
IMP
PMID:23651854
UniProt
PMID:23651854
RGD:13792545
NCBI chr 2:149,006,089...149,044,192
Ensembl chr 2:146,856,469...146,894,572
G
Dnm1l
dynamin 1-like
IMP
RGD
PMID:19605646
RGD:7800727
NCBI chr11:98,084,049...98,135,663
Ensembl chr11:84,581,216...84,631,482
G
Eef2k
eukaryotic elongation factor-2 kinase
IMP
RGD
PMID:20427644
RGD:10401235
NCBI chr 1:184,824,420...184,888,048
Ensembl chr 1:175,393,154...175,455,164
G
Ephb2
Eph receptor B2
IMP
RGD
PMID:21364901
RGD:127285794
NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059
G
Gprasp3
G protein-coupled receptor associated sorting protein family member 3
involved_in
ISO IEA
(PMID:21199326) GO_REF:0000107
RGD Ensembl
PMID:21199326
GO_REF:0000107
NCBI chr X:103,639,366...103,644,561
Ensembl chr X:98,817,593...98,854,545
G
Il1rapl1
interleukin 1 receptor accessory protein-like 1
involved_in
ISO
(PMID:21940441)
RGD
PMID:21940441
NCBI chr X:55,322,779...56,827,486
Ensembl chr X:51,378,215...52,876,772
G
Itpka
inositol-trisphosphate 3-kinase A
acts_upstream_of_or_within
IMP
PMID:19890013
MGI
PMID:19890013
RGD:8553536
NCBI chr 3:127,179,841...127,188,405
Ensembl chr 3:106,726,036...106,734,600
G
Kalrn
kalirin, RhoGEF kinase
acts_upstream_of_or_within
ISO
MGI:4358076 (PMID:19625617)
RGD
PMID:19625617
NCBI chr11:79,703,345...80,309,210
Ensembl chr11:66,198,173...66,797,610
G
Lrp8
LDL receptor related protein 8
involved_in
ISO IEA
(PMID:21852430) GO_REF:0000107
RGD Ensembl
PMID:21852430
GO_REF:0000107
NCBI chr 5:127,792,236...127,864,207
Ensembl chr 5:122,563,453...122,631,352
G
Mapre3
microtubule-associated protein, RP/EB family, member 3
IDA
RGD
PMID:31092585
RGD:597538596
NCBI chr 6:31,233,736...31,278,626
Ensembl chr 6:25,513,800...25,558,881
G
Marcks
myristoylated alanine rich protein kinase C substrate
IMP
RGD
PMID:16202710
RGD:9685333
NCBI chr20:42,240,185...42,245,882
Ensembl chr20:40,685,315...40,691,012
G
Mfn1
mitofusin 1
IMP
RGD
PMID:19605646
RGD:7800727
NCBI chr 2:117,240,525...117,288,017
Ensembl chr 2:115,313,401...115,359,640
G
Mfn2
mitofusin 2
IMP
RGD
PMID:19605646
RGD:7800727
NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:158,304,287...158,335,342
G
Opa1
OPA1, mitochondrial dynamin like GTPase
IMP
RGD
PMID:19605646
RGD:7800727
NCBI chr11:84,612,943...84,690,025
Ensembl chr11:71,109,873...71,185,109
G
Pafah1b1
platelet-activating factor acetylhydrolase 1b, regulatory subunit 1
involved_in
ISO IEA
(PMID:23483716) GO_REF:0000107
RGD Ensembl
PMID:23483716
GO_REF:0000107
NCBI chr10:60,031,441...60,090,259
Ensembl chr10:59,534,117...59,591,808
G
Pak3
p21 (RAC1) activated kinase 3
IMP
RGD
PMID:18481281
RGD:7775053
NCBI chr X:111,912,967...112,171,037
Ensembl chr X:107,260,898...107,368,314
G
Ptprd
protein tyrosine phosphatase, receptor type, D
involved_in
ISO
(PMID:21940441)
RGD
PMID:21940441
NCBI chr 5:95,093,221...97,415,498
Ensembl chr 5:90,048,966...92,369,396
G
Reln
reelin
involved_in
ISO
(PMID:21664258), (PMID:21852430)
RGD
PMID:21664258 PMID:21852430
NCBI chr 4:13,628,440...14,055,201
Ensembl chr 4:12,736,130...13,162,211
G
Slc30a1
solute carrier family 30 member 1
IMP
RGD
PMID:25319628
RGD:11057402
NCBI chr13:106,022,019...106,025,892
Ensembl chr13:103,491,037...103,494,910
G
Srcin1
SRC kinase signaling inhibitor 1
IDA
RGD
PMID:31092585
RGD:597538596
NCBI chr10:82,999,295...83,066,359
Ensembl chr10:82,504,393...82,571,040
G
Stau2
staufen double-stranded RNA binding protein 2
IMP
RGD
PMID:16418534
RGD:10043163
NCBI chr 5:7,623,528...7,868,206
Ensembl chr 5:2,840,765...3,084,929
G
Tiam1
TIAM Rac1 associated GEF 1
IMP
RGD
PMID:16474385
RGD:10043325
NCBI chr11:42,517,527...42,866,280
Ensembl chr11:29,031,348...29,159,901
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Arf6
ARF GTPase 6
involved_in
IMP IEA ISO IBA
PMID:16672654 GO_REF:0000107 (PMID:16325184) GO_REF:0000033
Ensembl RGD GO_Central
PMID:16325184 PMID:16672654
GO_REF:0000033 GO_REF:0000107, RGD:8554141
NCBI chr 6:93,589,777...93,590,925
Ensembl chr 6:87,840,142...87,874,114
G
Cpeb3
cytoplasmic polyadenylation element binding protein 3
involved_in
ISO
(PMID:24155305)
RGD
PMID:24155305
NCBI chr 1:244,161,690...244,343,765
Ensembl chr 1:234,751,733...234,931,560
G
Disc1
DISC1 scaffold protein
IMP
RGD
PMID:20139976
RGD:5509795
NCBI chr19:69,911,548...70,120,970
Ensembl chr19:53,014,616...53,219,778
G
Fmr1
fragile X messenger ribonucleoprotein 1
involved_in
ISO IEA ISS
(PMID:16631377) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:16631377
GO_REF:0000024 GO_REF:0000107
NCBI chr X:152,284,857...152,322,686
Ensembl chr X:147,240,301...147,278,050
G
Kif1a
kinesin family member 1A
involved_in
IMP
PMID:30021165
UniProt
PMID:30021165
RGD:14995321
NCBI chr 9:101,010,447...101,094,891
Ensembl chr 9:93,563,045...93,647,480
G
Mef2c
myocyte enhancer factor 2C
involved_in
ISS ISO
GO_REF:0000024 (PMID:18599438)
Alzheimers_University_of_Toronto RGD
PMID:18599438
GO_REF:0000024
NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880
G
Ppfia2
PTPRF interacting protein alpha 2
involved_in
ISO IEA
(PMID:30021165) GO_REF:0000107
RGD Ensembl
PMID:30021165
GO_REF:0000107
NCBI chr 7:43,652,258...44,126,555
Ensembl chr 7:41,765,575...42,239,599
G
Sdk1
sidekick cell adhesion molecule 1
acts_upstream_of_or_within
ISO IEA
(PMID:24449909) GO_REF:0000107
RGD Ensembl
PMID:24449909
GO_REF:0000107
NCBI chr12:17,491,430...18,477,914
Ensembl chr12:12,380,524...13,363,976
G
Tanc2
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
involved_in
IMP
PMID:30021165
UniProt
PMID:30021165
RGD:14995321
NCBI chr10:91,052,860...91,373,291
Ensembl chr10:90,553,002...90,868,756
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Abi2
abl-interactor 2
involved_in
ISO
(PMID:15572692)
RGD
PMID:15572692
NCBI chr 9:69,321,072...69,490,630
Ensembl chr 9:61,827,139...61,905,699
G
Abi3bp
ABI family member 3 binding protein
involved_in
IMP
PMID:22485184
ARUK-UCL
PMID:22485184
RGD:42721990
NCBI chr11:57,381,282...57,597,989
Ensembl chr11:43,913,043...44,128,929
G
Adam10
ADAM metallopeptidase domain 10
IMP
RGD
PMID:22328515
RGD:13703034
NCBI chr 8:80,226,862...80,358,728
Ensembl chr 8:71,345,837...71,477,889
G
Arc
activity-regulated cytoskeleton-associated protein
involved_in
IGI
PMID:15537891
ARUK-UCL
PMID:15537891
RGD:13210528
NCBI chr 7:108,444,959...108,448,413
Ensembl chr 7:106,555,785...106,559,378
G
Arhgap33
Rho GTPase activating protein 33
IMP
RGD
PMID:24003235
RGD:13508596
NCBI chr 1:94,903,566...94,917,074
Ensembl chr 1:85,776,108...85,789,678
G
Arhgap44
Rho GTPase activating protein 44
involved_in
IBA IEA ISO
GO_REF:0000033 GO_REF:0000107 (PMID:24352656)
GO_Central Ensembl RGD
PMID:24352656
GO_REF:0000033 GO_REF:0000107
NCBI chr10:50,154,724...50,322,027
Ensembl chr10:49,655,584...49,824,297
G
Cdk5
cyclin-dependent kinase 5
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:17143272) GO_REF:0000107
UniProt RGD Ensembl
PMID:17143272
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:11,647,098...11,651,606
Ensembl chr 4:10,754,687...10,760,112
G
Cdk5r1
cyclin-dependent kinase 5 regulatory subunit 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:17143272)
UniProt RGD
PMID:17143272
GO_REF:0000024
NCBI chr10:65,981,692...65,985,831
Ensembl chr10:65,483,941...65,488,456
G
Cfl1
cofilin 1
involved_in
ISO IEA ISS
(PMID:24464040) GO_REF:0000107 GO_REF:0000024
RGD Ensembl ParkinsonsUK-UCL
PMID:24464040
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:212,227,124...212,230,656
Ensembl chr 1:202,786,627...202,817,587
G
Dnm3
dynamin 3
IMP
RGD
PMID:15741233
RGD:8554738
NCBI chr13:76,892,381...77,371,346
Ensembl chr13:74,359,213...74,838,108
G
Epha4
Eph receptor A4
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:17143272)
UniProt Ensembl RGD
PMID:17143272
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:86,263,982...86,406,744
Ensembl chr 9:78,815,460...78,958,139
G
Kif1a
kinesin family member 1A
involved_in
IMP
PMID:30021165
UniProt
PMID:30021165
RGD:14995321
NCBI chr 9:101,010,447...101,094,891
Ensembl chr 9:93,563,045...93,647,480
G
Lrrk2
leucine-rich repeat kinase 2
involved_in
ISO IEA ISS
(PMID:21168496) GO_REF:0000107 UniProtKB:P23528 (PMID:24464040) GO_REF:0000024
RGD Ensembl ParkinsonsUK-UCL
PMID:21168496 PMID:24464040
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:122,826,696...122,987,703
G
Lzts3
leucine zipper tumor suppressor family member 3
involved_in
IMP IBA
PMID:27252646 GO_REF:0000033
GO_Central
PMID:27252646
GO_REF:0000033, RGD:13210540
NCBI chr 3:117,850,286...117,861,132
Ensembl chr 3:117,851,702...117,860,081
G
Nlgn3
neuroligin 3
involved_in
ISS ISO
GO_REF:0000024 (PMID:21808020)
BHF-UCL RGD
PMID:21808020 PMID:21808020
GO_REF:0000024, RGD:8553412
NCBI chr X:70,469,251...70,497,380
Ensembl chr X:66,429,458...66,451,876
G
Pdlim5
PDZ and LIM domain 5
involved_in
IDA
PMID:19900557
UniProt
PMID:19900557
RGD:8554803
NCBI chr 2:233,625,478...233,793,582
Ensembl chr 2:230,952,248...231,120,275
G
Ppfia2
PTPRF interacting protein alpha 2
involved_in
ISO IEA
(PMID:30021165) GO_REF:0000107
RGD Ensembl
PMID:30021165
GO_REF:0000107
NCBI chr 7:43,652,258...44,126,555
Ensembl chr 7:41,765,575...42,239,599
G
Ppp1r9a
protein phosphatase 1, regulatory subunit 9A
IMP
RGD
PMID:15473970
RGD:10043779
NCBI chr 4:33,936,949...34,258,927
Ensembl chr 4:33,024,450...33,286,907
G
Shank3
SH3 and multiple ankyrin repeat domains 3
involved_in
IEA ISO ISS
GO_REF:0000107 (PMID:21795692)
Ensembl RGD
PMID:21795692 PMID:21795692
GO_REF:0000107, RGD:7349315
NCBI chr 7:122,448,323...122,518,623
Ensembl chr 7:120,570,402...120,630,374
G
Sipa1l1
signal-induced proliferation-associated 1 like 1
involved_in
IDA
PMID:11502259
UniProt
PMID:11502259
RGD:8554032
NCBI chr 6:107,570,569...107,849,613
Ensembl chr 6:101,839,404...102,116,950
G
Smad3
SMAD family member 3
IMP
RGD
PMID:26030849
RGD:597830060
NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960
G
Srcin1
SRC kinase signaling inhibitor 1
involved_in
ISO IBA ISS
(PMID:19146815) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:19146815
GO_REF:0000024 GO_REF:0000033
NCBI chr10:82,999,295...83,066,359
Ensembl chr10:82,504,393...82,571,040
G
Tanc2
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
involved_in
IMP IBA
PMID:30021165 GO_REF:0000033
GO_Central
PMID:30021165
GO_REF:0000033, RGD:14995321
NCBI chr10:91,052,860...91,373,291
Ensembl chr10:90,553,002...90,868,756
G
Zdhhc15
zinc finger DHHC-type palmitoyltransferase 15
involved_in
IMP
PMID:31189538
UniProt
PMID:31189538
RGD:25671406
NCBI chr X:73,633,977...73,767,451
Ensembl chr X:69,574,124...69,701,756
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all