Abi3bp (ABI family member 3 binding protein) - Rat Genome Database

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Gene: Abi3bp (ABI family member 3 binding protein) Rattus norvegicus
Analyze
Symbol: Abi3bp
Name: ABI family member 3 binding protein
RGD ID: 1562717
Description: Enables actin filament binding activity. Involved in regulation of actin cytoskeleton reorganization; regulation of dendritic spine morphogenesis; and regulation of postsynaptic density assembly. Located in dendrite; lamellipodium; and postsynaptic density. Orthologous to human ABI3BP (ABI family member 3 binding protein); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: MODEL
Also known as: ABI family, member 3 (NESH) binding protein; LOC363767; RGD1562717; similar to ABI gene family, member 3 (NESH) binding protein; target of Nesh-SH3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21143,912,187 - 44,128,888 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.01146,206,932 - 46,422,791 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01149,392,633 - 49,608,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41144,853,302 - 45,072,354 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1143,684,476 - 43,899,701 (-)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:18757743   PMID:20551380   PMID:21873635   PMID:27068509   PMID:27559042  


Genomics

Comparative Map Data
Abi3bp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21143,912,187 - 44,128,888 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.01146,206,932 - 46,422,791 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01149,392,633 - 49,608,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41144,853,302 - 45,072,354 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1143,684,476 - 43,899,701 (-)NCBICelera
Cytogenetic Map11q12NCBI
ABI3BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3100,749,156 - 100,993,515 (-)EnsemblGRCh38hg38GRCh38
GRCh383100,749,156 - 100,993,508 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373100,468,000 - 100,712,265 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363101,950,869 - 102,195,004 (-)NCBINCBI36hg18NCBI36
Build 343101,950,870 - 102,195,004NCBI
Celera398,859,820 - 99,104,005 (-)NCBI
Cytogenetic Map3q12.2NCBI
HuRef397,836,061 - 98,080,791 (-)NCBIHuRef
CHM1_13100,431,225 - 100,675,396 (-)NCBICHM1_1
Abi3bp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391656,298,179 - 56,510,498 (+)NCBIGRCm39mm39
GRCm39 Ensembl1656,298,241 - 56,510,498 (+)Ensembl
GRCm381656,477,801 - 56,690,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1656,477,878 - 56,690,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv371656,477,959 - 56,690,248 (+)NCBIGRCm37mm9NCBIm37
MGSCv361656,402,851 - 56,614,268 (+)NCBImm8
Celera1656,793,163 - 57,021,872 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
Abi3bp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554272,363,536 - 2,581,853 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554272,362,403 - 2,581,970 (-)NCBIChiLan1.0ChiLan1.0
ABI3BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13104,522,344 - 104,765,730 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3104,523,470 - 104,765,688 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0397,842,070 - 98,086,311 (-)NCBIMhudiblu_PPA_v0panPan3
ABI3BP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,265,804 - 7,498,973 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,266,685 - 7,418,106 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha337,423,089 - 7,655,740 (-)NCBI
ROS_Cfam_1.0337,406,472 - 7,639,983 (-)NCBI
UMICH_Zoey_3.1337,293,726 - 7,526,820 (-)NCBI
UNSW_CanFamBas_1.0337,340,602 - 7,574,515 (-)NCBI
UU_Cfam_GSD_1.0337,672,180 - 7,905,974 (-)NCBI
LOC101954763
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602149,388,150 - 149,620,694 (+)NCBI
SpeTri2.0NW_0049366302,286,089 - 2,518,588 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABI3BP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13158,013,718 - 158,291,103 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113158,013,704 - 158,291,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213167,670,287 - 167,833,298 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103228444
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,896,800 - 80,144,786 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2279,964,684 - 80,143,496 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604186,416,587 - 86,660,863 (-)NCBIVero_WHO_p1.0
Abi3bp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478914,382,216 - 14,687,434 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D11Got39  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,936,810 - 43,936,992 (+)MAPPERmRatBN7.2
Rnor_6.01146,231,558 - 46,231,739NCBIRnor6.0
Rnor_5.01149,417,259 - 49,417,440UniSTSRnor5.0
RGSC_v3.41144,877,927 - 44,878,107RGDRGSC3.4
RGSC_v3.41144,877,928 - 44,878,109UniSTSRGSC3.4
RGSC_v3.11144,935,516 - 44,935,696RGD
Celera1143,709,143 - 43,709,324UniSTS
RH 3.4 Map11321.6UniSTS
RH 3.4 Map11321.6RGD
RH 2.0 Map11298.0RGD
Cytogenetic Map11q12UniSTS
AA926352  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,911,770 - 43,911,873 (+)MAPPERmRatBN7.2
Rnor_6.01146,206,518 - 46,206,620NCBIRnor6.0
Rnor_5.01149,392,219 - 49,392,321UniSTSRnor5.0
RGSC_v3.41144,852,888 - 44,852,990UniSTSRGSC3.4
Celera1143,684,062 - 43,684,164UniSTS
RH 3.4 Map11326.1UniSTS
Cytogenetic Map11q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:345
Count of miRNA genes:102
Interacting mature miRNAs:110
Transcripts:ENSRNOT00000002220, ENSRNOT00000002223, ENSRNOT00000047817, ENSRNOT00000049859, ENSRNOT00000063864, ENSRNOT00000070871, ENSRNOT00000072140
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 11 12 2 13 2 6 8 4 21 11 6
Low 1 26 45 39 6 39 2 3 54 35 20 2
Below cutoff 6 16

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006221114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000002220   ⟹   ENSRNOP00000002220
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000002223   ⟹   ENSRNOP00000002223
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,075,691 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000047817   ⟹   ENSRNOP00000049145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000049859   ⟹   ENSRNOP00000049004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,892 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000063864   ⟹   ENSRNOP00000063637
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000070871   ⟹   ENSRNOP00000065774
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.0 Ensembl1146,283,449 - 46,369,577 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000072140   ⟹   ENSRNOP00000064255
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,892 (-)Ensembl
Rnor_6.0 Ensembl1146,299,737 - 46,369,577 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108100   ⟹   ENSRNOP00000092554
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113493   ⟹   ENSRNOP00000096503
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119138   ⟹   ENSRNOP00000087277
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
RefSeq Acc Id: XM_006248232   ⟹   XP_006248294
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
Rnor_6.01146,206,932 - 46,422,790 (-)NCBI
Rnor_5.01149,392,633 - 49,608,013 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248233   ⟹   XP_006248295
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
Rnor_6.01146,206,932 - 46,422,790 (-)NCBI
Rnor_5.01149,392,633 - 49,608,013 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768669   ⟹   XP_008766891
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
Rnor_6.01146,206,932 - 46,422,790 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598119   ⟹   XP_017453608
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598120   ⟹   XP_017453609
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598121   ⟹   XP_017453610
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598122   ⟹   XP_017453611
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598123   ⟹   XP_017453612
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598124   ⟹   XP_017453613
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598125   ⟹   XP_017453614
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598126   ⟹   XP_017453615
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598127   ⟹   XP_017453616
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598128   ⟹   XP_017453617
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598129   ⟹   XP_017453618
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598131   ⟹   XP_017453620
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598132   ⟹   XP_017453621
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598133   ⟹   XP_017453622
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598136   ⟹   XP_017453625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598142   ⟹   XP_017453631
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
Rnor_6.01146,206,932 - 46,422,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598143   ⟹   XP_017453632
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
Rnor_6.01146,206,932 - 46,422,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598144   ⟹   XP_017453633
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
Rnor_6.01146,206,932 - 46,422,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598145   ⟹   XP_017453634
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
Rnor_6.01146,206,932 - 46,422,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088834   ⟹   XP_038944762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
RefSeq Acc Id: XM_039088835   ⟹   XP_038944763
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
RefSeq Acc Id: XM_039088837   ⟹   XP_038944765
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
RefSeq Acc Id: XM_039088838   ⟹   XP_038944766
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
RefSeq Acc Id: XM_039088839   ⟹   XP_038944767
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088840   ⟹   XP_038944768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088841   ⟹   XP_038944769
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088842   ⟹   XP_038944770
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088843   ⟹   XP_038944771
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088844   ⟹   XP_038944772
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088845   ⟹   XP_038944773
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088846   ⟹   XP_038944774
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088847   ⟹   XP_038944775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088848   ⟹   XP_038944776
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088849   ⟹   XP_038944777
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088850   ⟹   XP_038944778
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088851   ⟹   XP_038944779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088852   ⟹   XP_038944780
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088853   ⟹   XP_038944781
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088854   ⟹   XP_038944782
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088855   ⟹   XP_038944783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088856   ⟹   XP_038944784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088857   ⟹   XP_038944785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088858   ⟹   XP_038944786
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088859   ⟹   XP_038944787
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088860   ⟹   XP_038944788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088861   ⟹   XP_038944789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
RefSeq Acc Id: XM_039088862   ⟹   XP_038944790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21143,912,187 - 44,128,883 (-)NCBI
Protein Sequences
Protein RefSeqs XP_006248294 (Get FASTA)   NCBI Sequence Viewer  
  XP_006248295 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766891 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453608 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453609 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453610 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453611 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453612 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453613 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453614 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453615 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453616 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453617 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453618 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453620 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453621 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453622 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453625 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453631 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453632 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453633 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453634 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944762 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944763 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944765 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944766 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944767 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944768 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944769 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944770 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944771 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944772 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944773 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944774 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944775 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944777 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944778 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944779 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944781 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944782 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944783 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944784 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944785 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944786 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944787 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944788 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944789 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944790 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM11046 (Get FASTA)   NCBI Sequence Viewer  
  EDM11047 (Get FASTA)   NCBI Sequence Viewer  
  EDM11048 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_006248295   ⟸   XM_006248233
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: XP_006248294   ⟸   XM_006248232
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_008766891   ⟸   XM_008768669
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_017453625   ⟸   XM_017598136
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_017453617   ⟸   XM_017598128
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017453621   ⟸   XM_017598132
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_017453618   ⟸   XM_017598129
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017453616   ⟸   XM_017598127
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017453612   ⟸   XM_017598123
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017453613   ⟸   XM_017598124
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017453609   ⟸   XM_017598120
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017453610   ⟸   XM_017598121
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017453611   ⟸   XM_017598122
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017453622   ⟸   XM_017598133
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_017453614   ⟸   XM_017598125
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017453620   ⟸   XM_017598131
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017453615   ⟸   XM_017598126
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017453608   ⟸   XM_017598119
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453634   ⟸   XM_017598145
- Peptide Label: isoform X36
- Sequence:
RefSeq Acc Id: XP_017453632   ⟸   XM_017598143
- Peptide Label: isoform X34
- Sequence:
RefSeq Acc Id: XP_017453633   ⟸   XM_017598144
- Peptide Label: isoform X35
- Sequence:
RefSeq Acc Id: XP_017453631   ⟸   XM_017598142
- Peptide Label: isoform X33
- Sequence:
RefSeq Acc Id: ENSRNOP00000065774   ⟸   ENSRNOT00000070871
RefSeq Acc Id: ENSRNOP00000049145   ⟸   ENSRNOT00000047817
RefSeq Acc Id: ENSRNOP00000063637   ⟸   ENSRNOT00000063864
RefSeq Acc Id: ENSRNOP00000002223   ⟸   ENSRNOT00000002223
RefSeq Acc Id: ENSRNOP00000002220   ⟸   ENSRNOT00000002220
RefSeq Acc Id: ENSRNOP00000049004   ⟸   ENSRNOT00000049859
RefSeq Acc Id: ENSRNOP00000064255   ⟸   ENSRNOT00000072140
RefSeq Acc Id: XP_038944765   ⟸   XM_039088837
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038944762   ⟸   XM_039088834
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038944766   ⟸   XM_039088838
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038944763   ⟸   XM_039088835
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944780   ⟸   XM_039088852
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038944777   ⟸   XM_039088849
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038944772   ⟸   XM_039088844
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038944776   ⟸   XM_039088848
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038944774   ⟸   XM_039088846
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038944775   ⟸   XM_039088847
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038944771   ⟸   XM_039088843
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038944770   ⟸   XM_039088842
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038944773   ⟸   XM_039088845
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038944769   ⟸   XM_039088841
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038944768   ⟸   XM_039088840
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038944767   ⟸   XM_039088839
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038944787   ⟸   XM_039088859
- Peptide Label: isoform X47
RefSeq Acc Id: XP_038944784   ⟸   XM_039088856
- Peptide Label: isoform X44
RefSeq Acc Id: XP_038944783   ⟸   XM_039088855
- Peptide Label: isoform X43
RefSeq Acc Id: XP_038944790   ⟸   XM_039088862
- Peptide Label: isoform X50
RefSeq Acc Id: XP_038944789   ⟸   XM_039088861
- Peptide Label: isoform X49
RefSeq Acc Id: XP_038944782   ⟸   XM_039088854
- Peptide Label: isoform X42
RefSeq Acc Id: XP_038944788   ⟸   XM_039088860
- Peptide Label: isoform X48
RefSeq Acc Id: XP_038944786   ⟸   XM_039088858
- Peptide Label: isoform X46
RefSeq Acc Id: XP_038944781   ⟸   XM_039088853
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038944778   ⟸   XM_039088850
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038944785   ⟸   XM_039088857
- Peptide Label: isoform X45
RefSeq Acc Id: XP_038944779   ⟸   XM_039088851
- Peptide Label: isoform X39
RefSeq Acc Id: ENSRNOP00000087277   ⟸   ENSRNOT00000119138
RefSeq Acc Id: ENSRNOP00000092554   ⟸   ENSRNOT00000108100
RefSeq Acc Id: ENSRNOP00000096503   ⟸   ENSRNOT00000113493
Protein Domains
Fibronectin type-III

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 49409247 49409248 T C snv LN/MavRrrc (KNAW)
11 49431038 49431039 G A snv WKY/N (KNAW), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), WKY/NHsd (KNAW), WKY/NCrl (KNAW), SHRSP/Gcrc (KNAW), LE/Stm (KyushuU), IS-Tlk/Kyo (KyushuU), GK/Ox (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), WKY/Gcrc (KNAW), IS/Kyo (KyushuU), Crl:SD (UDEL)
11 49473598 49473599 C T snv SHR/OlaIpcvPrin (KNAW), M520/N (KNAW), F344/NHsd (KNAW), F344/NRrrc (SOLiD) (KNAW), BUF/N (KNAW), MR/N (KNAW), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), BDIX/NemOda (KyushuU), F344/NSlc (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL), WKY/NHsd (KNAW), WKY/NCrl (KNAW), WKY/N (KNAW), LE/Stm (Illumina) (KNAW), SBH/Ygl (MCW), BBDP/WorN (KNAW), F344/NCrl (KNAW), GK/Ox (KNAW), LE/Stm (SOLiD) (KNAW), SBH/Ygl (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHRSP/Gcrc (KNAW), LE/OrlBarth (UDEL), IS/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), F344/Jcl (KyushuU), F344/NRrrc (Illumina) (KNAW), WKY/Gcrc (KNAW)
11 49484117 49484118 T G snv SDLEF7/Barth (UDEL), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), Crl:SD (UDEL), LE/OrlBarth (UDEL), LE/Stm (KyushuU)
11 49521378 49521379 C T snv Crl:SD (UDEL), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 43928799 43928800 T C snv LN/MavRrrcAek (2020)
11 43950888 43950889 G A snv LE/Stm (2019), HXB31/IpcvMcwi (2019), HXB10/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE18/Stm (2020), FXLE16/Stm (2020), BXH3/CubMcwi (2020), BXH2/CubMcwi (2020), WKY/N (2020), WKY/NCrl (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), LEXF10A/StmMcwi (2020), LEXF4/Stm (2020), LEXF3/Stm (2020)
11 43993744 43993745 C T snv LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), HXB31/IpcvMcwi (2019), HXB10/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE18/Stm (2020), FXLE16/Stm (2020), F344/Stm (2019), F344/N (2020), WKY/N (2020), F344/DuCrl (2019), BXH3/CubMcwi (2020), BXH2/CubMcwi (2020), BUF/N (2020), F344/NCrl (2019)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
11 46223546 46223547 T C snv LN/MavRrrcAek (2020), LN/MavRrrc (RGD)
11 46245630 46245631 G A snv WKY/N (MCW), GK/Ox (RGD), LE/Stm (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020)
11 46281529 46281530 T C snv CDR, WKY/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), SBH/Ygl (MCW), ACI/N (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), ACI/EurMcwi (RGD), F344/NCrl (RGD), GK/Ox (RGD), LE/Stm (RGD), SBH/Ygl (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), CDS
11 46288190 46288191 C T snv WKY/NHsd (RGD), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), CDR, CDS, SBH/Ygl (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), BBDP/Wor (RGD), F344/NCrl (RGD), LE/Stm (RGD), SBH/Ygl (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD)
11 46298709 46298710 T G snv LE/Stm (RGD), FXLE16/Stm (2020), FXLE18/Stm (2020), LEXF10A/StmMcwi (2020), LEXF4/Stm (2020), LE/Stm (2019), LEXF3/Stm (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562717 AgrOrtholog
Ensembl Genes ENSRNOG00000001627 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002220 UniProtKB/TrEMBL
  ENSRNOP00000002223 UniProtKB/TrEMBL
  ENSRNOP00000049004 UniProtKB/TrEMBL
  ENSRNOP00000049145 UniProtKB/TrEMBL
  ENSRNOP00000063637 UniProtKB/TrEMBL
  ENSRNOP00000064255 UniProtKB/TrEMBL
  ENSRNOP00000065774 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002220 UniProtKB/TrEMBL
  ENSRNOT00000002223 UniProtKB/TrEMBL
  ENSRNOT00000047817 UniProtKB/TrEMBL
  ENSRNOT00000049859 UniProtKB/TrEMBL
  ENSRNOT00000063864 UniProtKB/TrEMBL
  ENSRNOT00000070871 UniProtKB/TrEMBL
  ENSRNOT00000072140 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
NCBI Gene 363767 ENTREZGENE
Pfam fn3 UniProtKB/TrEMBL
PhenoGen Abi3bp PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
UniProt F1M0R2_RAT UniProtKB/TrEMBL
  F1M1N9_RAT UniProtKB/TrEMBL
  F1M305_RAT UniProtKB/TrEMBL
  F1M9R3_RAT UniProtKB/TrEMBL
  F1M9R4_RAT UniProtKB/TrEMBL
  M0R4H0_RAT UniProtKB/TrEMBL
  M0R8H8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Abi3bp  ABI family member 3 binding protein  Abi3bp  ABI family, member 3 (NESH) binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-12 Abi3bp  ABI family, member 3 (NESH) binding protein  RGD1562717  similar to ABI gene family, member 3 (NESH) binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562717  similar to ABI gene family, member 3 (NESH) binding protein   RGD1562717_predicted  similar to ABI gene family, member 3 (NESH) binding protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562717_predicted  similar to ABI gene family, member 3 (NESH) binding protein (predicted)  LOC363767  similar to ABI gene family, member 3 (NESH) binding protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363767  similar to ABI gene family, member 3 (NESH) binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL