Abi3bp (ABI family member 3 binding protein) - Rat Genome Database

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Gene: Abi3bp (ABI family member 3 binding protein) Rattus norvegicus
Analyze
Symbol: Abi3bp
Name: ABI family member 3 binding protein
RGD ID: 1562717
Description: Enables actin filament binding activity. Involved in actin cytoskeleton organization; regulation of dendritic spine morphogenesis; and regulation of postsynaptic density assembly. Located in dendrite; lamellipodium; and postsynaptic density. Orthologous to human ABI3BP (ABI family member 3 binding protein); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ABI family, member 3 (NESH) binding protein; LOC363767; RGD1562717; similar to ABI gene family, member 3 (NESH) binding protein; target of Nesh-SH3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81157,381,282 - 57,597,989 (-)NCBIGRCr8
mRatBN7.21143,912,187 - 44,128,888 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01146,206,932 - 46,422,791 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01149,392,633 - 49,608,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41144,853,302 - 45,072,354 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1143,684,476 - 43,899,701 (-)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium atom  (ISO)
chrysene  (ISO)
clothianidin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (EXP,ISO)
diquat  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP,ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenofibrate  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
glycine betaine  (EXP)
GW 4064  (ISO)
indometacin  (ISO)
maneb  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
N-nitrosodiethylamine  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
sodium arsenate  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
topotecan  (EXP)
tremolite asbestos  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. F-actin-dependent regulation of NESH dynamics in rat hippocampal neurons. Bae J, etal., PLoS One. 2012;7(4):e34514. doi: 10.1371/journal.pone.0034514. Epub 2012 Apr 4.
2. NESH regulates dendritic spine morphology and synapse formation. Bae J, etal., PLoS One. 2012;7(4):e34677. doi: 10.1371/journal.pone.0034677. Epub 2012 Apr 2.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Insulin receptor substrate protein 53 (IRSp53) as a binding partner of antimetastasis molecule NESH, a member of Abelson interactor protein family. Matsuda S, etal., Ann Oncol. 2008 Jul;19(7):1356-1357. doi: 10.1093/annonc/mdn293. Epub 2008 May 13.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18757743   PMID:20551380   PMID:27068509   PMID:27559042  


Genomics

Comparative Map Data
Abi3bp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81157,381,282 - 57,597,989 (-)NCBIGRCr8
mRatBN7.21143,912,187 - 44,128,888 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01146,206,932 - 46,422,791 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01149,392,633 - 49,608,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41144,853,302 - 45,072,354 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1143,684,476 - 43,899,701 (-)NCBICelera
Cytogenetic Map11q12NCBI
ABI3BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383100,749,156 - 100,993,421 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3100,749,156 - 100,993,515 (-)EnsemblGRCh38hg38GRCh38
GRCh373100,468,000 - 100,712,265 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363101,950,869 - 102,195,004 (-)NCBINCBI36Build 36hg18NCBI36
Build 343101,950,870 - 102,195,004NCBI
Celera398,859,820 - 99,104,005 (-)NCBICelera
Cytogenetic Map3q12.2NCBI
HuRef397,836,061 - 98,080,791 (-)NCBIHuRef
CHM1_13100,431,225 - 100,675,396 (-)NCBICHM1_1
T2T-CHM13v2.03103,454,905 - 103,699,234 (-)NCBIT2T-CHM13v2.0
Abi3bp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391656,298,179 - 56,510,498 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1656,298,241 - 56,510,498 (+)EnsemblGRCm39 Ensembl
GRCm381656,477,801 - 56,690,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1656,477,878 - 56,690,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv371656,477,959 - 56,690,248 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361656,402,851 - 56,614,268 (+)NCBIMGSCv36mm8
Celera1656,793,163 - 57,021,872 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1634.09NCBI
Abi3bp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554272,363,536 - 2,581,853 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554272,362,403 - 2,581,970 (-)NCBIChiLan1.0ChiLan1.0
ABI3BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2298,689,663 - 98,934,132 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1398,694,447 - 98,938,933 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0397,842,070 - 98,086,311 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13104,522,344 - 104,765,730 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3104,523,470 - 104,765,688 (-)Ensemblpanpan1.1panPan2
ABI3BP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,265,804 - 7,498,973 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,266,685 - 7,418,106 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha337,423,089 - 7,655,740 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0337,406,472 - 7,639,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl337,406,477 - 7,639,955 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1337,293,726 - 7,526,820 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0337,340,602 - 7,574,515 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0337,672,180 - 7,905,974 (-)NCBIUU_Cfam_GSD_1.0
Abi3bp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602149,388,150 - 149,620,694 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366302,286,153 - 2,517,511 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366302,286,089 - 2,518,588 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABI3BP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13158,013,726 - 158,291,103 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113158,013,704 - 158,291,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213167,670,287 - 167,833,298 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABI3BP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,896,800 - 80,144,786 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2279,964,684 - 80,143,496 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604186,416,587 - 86,660,863 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abi3bp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478914,383,162 - 14,687,395 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478914,382,216 - 14,687,434 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Abi3bp
881 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:345
Count of miRNA genes:102
Interacting mature miRNAs:110
Transcripts:ENSRNOT00000002220, ENSRNOT00000002223, ENSRNOT00000047817, ENSRNOT00000049859, ENSRNOT00000063864, ENSRNOT00000070871, ENSRNOT00000072140
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat

Markers in Region
D11Got39  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,936,810 - 43,936,992 (+)MAPPERmRatBN7.2
Rnor_6.01146,231,558 - 46,231,739NCBIRnor6.0
Rnor_5.01149,417,259 - 49,417,440UniSTSRnor5.0
RGSC_v3.41144,877,927 - 44,878,107RGDRGSC3.4
RGSC_v3.41144,877,928 - 44,878,109UniSTSRGSC3.4
RGSC_v3.11144,935,516 - 44,935,696RGD
Celera1143,709,143 - 43,709,324UniSTS
RH 3.4 Map11321.6UniSTS
RH 3.4 Map11321.6RGD
RH 2.0 Map11298.0RGD
Cytogenetic Map11q12UniSTS
AA926352  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,911,770 - 43,911,873 (+)MAPPERmRatBN7.2
Rnor_6.01146,206,518 - 46,206,620NCBIRnor6.0
Rnor_5.01149,392,219 - 49,392,321UniSTSRnor5.0
RGSC_v3.41144,852,888 - 44,852,990UniSTSRGSC3.4
Celera1143,684,062 - 43,684,164UniSTS
RH 3.4 Map11326.1UniSTS
Cytogenetic Map11q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006221114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002220   ⟹   ENSRNOP00000002220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000002223   ⟹   ENSRNOP00000002223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,075,691 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000047817   ⟹   ENSRNOP00000049145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000049859   ⟹   ENSRNOP00000049004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,892 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000063864   ⟹   ENSRNOP00000063637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000070871   ⟹   ENSRNOP00000065774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Rnor_6.0 Ensembl1146,283,449 - 46,369,577 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000072140   ⟹   ENSRNOP00000064255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,892 (-)Ensembl
Rnor_6.0 Ensembl1146,299,737 - 46,369,577 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108100   ⟹   ENSRNOP00000092554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113493   ⟹   ENSRNOP00000096503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119138   ⟹   ENSRNOP00000087277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)Ensembl
RefSeq Acc Id: XM_006248232   ⟹   XP_006248294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
Rnor_6.01146,206,932 - 46,422,790 (-)NCBI
Rnor_5.01149,392,633 - 49,608,013 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768669   ⟹   XP_008766891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
Rnor_6.01146,206,932 - 46,422,790 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598119   ⟹   XP_017453608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598120   ⟹   XP_017453609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598121   ⟹   XP_017453610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598122   ⟹   XP_017453611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598123   ⟹   XP_017453612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598124   ⟹   XP_017453613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598125   ⟹   XP_017453614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598126   ⟹   XP_017453615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598127   ⟹   XP_017453616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598128   ⟹   XP_017453617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598129   ⟹   XP_017453618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598131   ⟹   XP_017453620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598132   ⟹   XP_017453621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598136   ⟹   XP_017453625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
Rnor_6.01146,206,932 - 46,422,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088834   ⟹   XP_038944762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,888 (-)NCBI
RefSeq Acc Id: XM_039088839   ⟹   XP_038944767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_039088841   ⟹   XP_038944769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
mRatBN7.21143,912,187 - 44,128,884 (-)NCBI
RefSeq Acc Id: XM_063270900   ⟹   XP_063126970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270901   ⟹   XP_063126971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270902   ⟹   XP_063126972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270904   ⟹   XP_063126974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270905   ⟹   XP_063126975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270906   ⟹   XP_063126976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270907   ⟹   XP_063126977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270908   ⟹   XP_063126978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270909   ⟹   XP_063126979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270910   ⟹   XP_063126980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270911   ⟹   XP_063126981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270912   ⟹   XP_063126982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270913   ⟹   XP_063126983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270914   ⟹   XP_063126984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270915   ⟹   XP_063126985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270916   ⟹   XP_063126986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270917   ⟹   XP_063126987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270918   ⟹   XP_063126988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270919   ⟹   XP_063126989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270920   ⟹   XP_063126990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270921   ⟹   XP_063126991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270922   ⟹   XP_063126992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270923   ⟹   XP_063126993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270924   ⟹   XP_063126994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270925   ⟹   XP_063126995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270926   ⟹   XP_063126996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270927   ⟹   XP_063126997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270928   ⟹   XP_063126998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XM_063270929   ⟹   XP_063126999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,381,282 - 57,597,989 (-)NCBI
RefSeq Acc Id: XR_010056272
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,413,333 - 57,597,989 (-)NCBI
RefSeq Acc Id: XR_010056273
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81157,413,333 - 57,597,989 (-)NCBI
Protein Sequences
Protein RefSeqs XP_006248294 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766891 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453608 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453609 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453610 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453611 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453612 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453613 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453614 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453615 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453616 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453617 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453618 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453620 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453621 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453625 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944762 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944767 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944769 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126970 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126971 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126972 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126974 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126975 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126976 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126977 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126978 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126979 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126980 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126981 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126982 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126983 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126984 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126985 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126986 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126987 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126988 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126989 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126990 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126991 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126992 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126993 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126994 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126995 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126996 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126997 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126998 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126999 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM11046 (Get FASTA)   NCBI Sequence Viewer  
  EDM11047 (Get FASTA)   NCBI Sequence Viewer  
  EDM11048 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002220.8
  ENSRNOP00000002223.8
  ENSRNOP00000049004.6
  ENSRNOP00000049145.6
  ENSRNOP00000063637.4
  ENSRNOP00000064255.3
  ENSRNOP00000065774.3
  ENSRNOP00000087277.1
  ENSRNOP00000092554.1
  ENSRNOP00000096503.1
RefSeq Acc Id: XP_006248294   ⟸   XM_006248232
- Peptide Label: isoform X41
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766891   ⟸   XM_008768669
- Peptide Label: isoform X46
- UniProtKB: M0R8H8 (UniProtKB/TrEMBL),   F1M1N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453625   ⟸   XM_017598136
- Peptide Label: isoform X28
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453617   ⟸   XM_017598128
- Peptide Label: isoform X14
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453621   ⟸   XM_017598132
- Peptide Label: isoform X22
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453618   ⟸   XM_017598129
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453616   ⟸   XM_017598127
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453612   ⟸   XM_017598123
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453613   ⟸   XM_017598124
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453609   ⟸   XM_017598120
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453610   ⟸   XM_017598121
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453611   ⟸   XM_017598122
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453614   ⟸   XM_017598125
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453620   ⟸   XM_017598131
- Peptide Label: isoform X20
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453615   ⟸   XM_017598126
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453608   ⟸   XM_017598119
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000065774   ⟸   ENSRNOT00000070871
Ensembl Acc Id: ENSRNOP00000049145   ⟸   ENSRNOT00000047817
Ensembl Acc Id: ENSRNOP00000063637   ⟸   ENSRNOT00000063864
Ensembl Acc Id: ENSRNOP00000002223   ⟸   ENSRNOT00000002223
Ensembl Acc Id: ENSRNOP00000002220   ⟸   ENSRNOT00000002220
Ensembl Acc Id: ENSRNOP00000049004   ⟸   ENSRNOT00000049859
Ensembl Acc Id: ENSRNOP00000064255   ⟸   ENSRNOT00000072140
RefSeq Acc Id: XP_038944762   ⟸   XM_039088834
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944769   ⟸   XM_039088841
- Peptide Label: isoform X47
- UniProtKB: F1M1N9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944767   ⟸   XM_039088839
- Peptide Label: isoform X44
- UniProtKB: A0A8I6ATG1 (UniProtKB/TrEMBL),   M0R4H0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000087277   ⟸   ENSRNOT00000119138
Ensembl Acc Id: ENSRNOP00000092554   ⟸   ENSRNOT00000108100
Ensembl Acc Id: ENSRNOP00000096503   ⟸   ENSRNOT00000113493
RefSeq Acc Id: XP_063126979   ⟸   XM_063270909
- Peptide Label: isoform X23
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126999   ⟸   XM_063270929
- Peptide Label: isoform X48
- UniProtKB: F1M305 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126977   ⟸   XM_063270907
- Peptide Label: isoform X19
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126980   ⟸   XM_063270910
- Peptide Label: isoform X24
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126974   ⟸   XM_063270904
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126998   ⟸   XM_063270928
- Peptide Label: isoform X45
- UniProtKB: F1M0R2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126970   ⟸   XM_063270900
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126989   ⟸   XM_063270919
- Peptide Label: isoform X34
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126997   ⟸   XM_063270927
- Peptide Label: isoform X43
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126995   ⟸   XM_063270925
- Peptide Label: isoform X40
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126996   ⟸   XM_063270926
- Peptide Label: isoform X42
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126994   ⟸   XM_063270924
- Peptide Label: isoform X39
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126993   ⟸   XM_063270923
- Peptide Label: isoform X38
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126991   ⟸   XM_063270921
- Peptide Label: isoform X36
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126978   ⟸   XM_063270908
- Peptide Label: isoform X21
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126992   ⟸   XM_063270922
- Peptide Label: isoform X37
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL),   A0A8I6A422 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126990   ⟸   XM_063270920
- Peptide Label: isoform X35
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126988   ⟸   XM_063270918
- Peptide Label: isoform X33
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126976   ⟸   XM_063270906
- Peptide Label: isoform X18
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126972   ⟸   XM_063270902
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126986   ⟸   XM_063270916
- Peptide Label: isoform X31
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126987   ⟸   XM_063270917
- Peptide Label: isoform X32
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126985   ⟸   XM_063270915
- Peptide Label: isoform X30
- UniProtKB: M0R4H0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126984   ⟸   XM_063270914
- Peptide Label: isoform X29
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126983   ⟸   XM_063270913
- Peptide Label: isoform X27
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126982   ⟸   XM_063270912
- Peptide Label: isoform X26
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126981   ⟸   XM_063270911
- Peptide Label: isoform X25
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126975   ⟸   XM_063270905
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126971   ⟸   XM_063270901
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AGS4 (UniProtKB/TrEMBL)
Protein Domains
Fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M0R2-F1-model_v2 AlphaFold F1M0R2 1-1148 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562717 AgrOrtholog
BioCyc Gene G2FUF-21524 BioCyc
Ensembl Genes ENSRNOG00000001627 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002220.9 UniProtKB/TrEMBL
  ENSRNOT00000002223.9 UniProtKB/TrEMBL
  ENSRNOT00000047817.7 UniProtKB/TrEMBL
  ENSRNOT00000049859.7 UniProtKB/TrEMBL
  ENSRNOT00000063864.5 UniProtKB/TrEMBL
  ENSRNOT00000070871.4 UniProtKB/TrEMBL
  ENSRNOT00000072140.3 UniProtKB/TrEMBL
  ENSRNOT00000108100.1 UniProtKB/TrEMBL
  ENSRNOT00000113493.1 UniProtKB/TrEMBL
  ENSRNOT00000119138.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  TARSH/FNDC1_C UniProtKB/TrEMBL
NCBI Gene 363767 ENTREZGENE
PANTHER TARGET OF NESH-SH3 UniProtKB/TrEMBL
  TARSH-RELATED FIBRONECTIN DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  TARSH_C UniProtKB/TrEMBL
PhenoGen Abi3bp PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001627 RatGTEx
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
UniProt A0A8I6A422 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGS4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATG1 ENTREZGENE, UniProtKB/TrEMBL
  F1M0R2 ENTREZGENE, UniProtKB/TrEMBL
  F1M1N9 ENTREZGENE, UniProtKB/TrEMBL
  F1M305 ENTREZGENE, UniProtKB/TrEMBL
  F1M9R3_RAT UniProtKB/TrEMBL
  F1M9R4_RAT UniProtKB/TrEMBL
  M0R4H0 ENTREZGENE, UniProtKB/TrEMBL
  M0R8H8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Abi3bp  ABI family member 3 binding protein  Abi3bp  ABI family, member 3 (NESH) binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-12 Abi3bp  ABI family, member 3 (NESH) binding protein  RGD1562717  similar to ABI gene family, member 3 (NESH) binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562717  similar to ABI gene family, member 3 (NESH) binding protein   RGD1562717_predicted  similar to ABI gene family, member 3 (NESH) binding protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562717_predicted  similar to ABI gene family, member 3 (NESH) binding protein (predicted)  LOC363767  similar to ABI gene family, member 3 (NESH) binding protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363767  similar to ABI gene family, member 3 (NESH) binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL