Abi3bp (ABI family member 3 binding protein) - Rat Genome Database

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Gene: Abi3bp (ABI family member 3 binding protein) Ictidomys tridecemlineatus
Analyze
Symbol: Abi3bp
Name: ABI family member 3 binding protein
RGD ID: 12585795
Description: ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); endometriosis (ortholog); FOUND IN dendritic shaft (ortholog); dendritic spine (ortholog); lamellipodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101954763; target of Nesh-SH3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602149,388,150 - 149,620,694 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366302,286,153 - 2,517,511 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366302,286,089 - 2,518,588 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abi3bp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602149,388,150 - 149,620,694 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366302,286,153 - 2,517,511 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366302,286,089 - 2,518,588 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABI3BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383100,749,156 - 100,993,421 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3100,749,156 - 100,993,515 (-)EnsemblGRCh38hg38GRCh38
GRCh373100,468,000 - 100,712,265 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363101,950,869 - 102,195,004 (-)NCBINCBI36Build 36hg18NCBI36
Build 343101,950,870 - 102,195,004NCBI
Celera398,859,820 - 99,104,005 (-)NCBICelera
Cytogenetic Map3q12.2NCBI
HuRef397,836,061 - 98,080,791 (-)NCBIHuRef
CHM1_13100,431,225 - 100,675,396 (-)NCBICHM1_1
T2T-CHM13v2.03103,454,905 - 103,699,234 (-)NCBIT2T-CHM13v2.0
Abi3bp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391656,298,179 - 56,510,498 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1656,298,241 - 56,510,498 (+)EnsemblGRCm39 Ensembl
GRCm381656,477,801 - 56,690,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1656,477,878 - 56,690,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv371656,477,959 - 56,690,248 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361656,402,851 - 56,614,268 (+)NCBIMGSCv36mm8
Celera1656,793,163 - 57,021,872 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1634.09NCBI
Abi3bp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81157,381,282 - 57,597,989 (-)NCBIGRCr8
mRatBN7.21143,912,187 - 44,128,888 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1143,913,043 - 44,128,929 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01146,206,932 - 46,422,791 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,208,075 - 46,369,577 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01149,392,633 - 49,608,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41144,853,302 - 45,072,354 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1143,684,476 - 43,899,701 (-)NCBICelera
Cytogenetic Map11q12NCBI
Abi3bp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554272,363,536 - 2,581,853 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554272,362,403 - 2,581,970 (-)NCBIChiLan1.0ChiLan1.0
ABI3BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2298,689,663 - 98,934,132 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1398,694,447 - 98,938,933 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0397,842,070 - 98,086,311 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13104,522,344 - 104,765,730 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3104,523,470 - 104,765,688 (-)Ensemblpanpan1.1panPan2
ABI3BP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,265,804 - 7,498,973 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,266,685 - 7,418,106 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha337,423,089 - 7,655,740 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0337,406,472 - 7,639,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl337,406,477 - 7,639,955 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1337,293,726 - 7,526,820 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0337,340,602 - 7,574,515 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0337,672,180 - 7,905,974 (-)NCBIUU_Cfam_GSD_1.0
ABI3BP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13158,013,726 - 158,291,103 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113158,013,704 - 158,291,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213167,670,287 - 167,833,298 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABI3BP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,896,800 - 80,144,786 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2279,964,684 - 80,143,496 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604186,416,587 - 86,660,863 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abi3bp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478914,383,162 - 14,687,395 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478914,382,216 - 14,687,434 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000001270   ⟹   ENSSTOP00000001139
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366302,286,153 - 2,517,511 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000030957   ⟹   ENSSTOP00000024470
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366302,286,153 - 2,517,511 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000032120   ⟹   ENSSTOP00000029603
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366302,286,153 - 2,517,511 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000038231   ⟹   ENSSTOP00000026054
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366302,286,153 - 2,517,511 (+)Ensembl
RefSeq Acc Id: XM_040270593   ⟹   XP_040126527
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602149,388,150 - 149,620,694 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040126527 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001139.3
  ENSSTOP00000024470.1
  ENSSTOP00000026054.1
  ENSSTOP00000029603.1
GenBank Protein KAG3271596 (Get FASTA)   NCBI Sequence Viewer  
  KAG3271597 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040126527   ⟸   XM_040270593
Ensembl Acc Id: ENSSTOP00000024470   ⟸   ENSSTOT00000030957
Ensembl Acc Id: ENSSTOP00000029603   ⟸   ENSSTOT00000032120
Ensembl Acc Id: ENSSTOP00000026054   ⟸   ENSSTOT00000038231
Ensembl Acc Id: ENSSTOP00000001139   ⟸   ENSSTOT00000001270
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001251 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001270.3 UniProtKB/TrEMBL
  ENSSTOT00000030957.1 UniProtKB/TrEMBL
  ENSSTOT00000032120.1 UniProtKB/TrEMBL
  ENSSTOT00000038231.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  TARSH/FNDC1_C UniProtKB/TrEMBL
NCBI Gene Abi3bp ENTREZGENE
PANTHER TARGET OF NESH-SH3 UniProtKB/TrEMBL
  TARSH-RELATED FIBRONECTIN DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  TARSH_C UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A287CT10_ICTTR UniProtKB/TrEMBL
  A0A287CXS5_ICTTR UniProtKB/TrEMBL
  A0A287D7U2_ICTTR UniProtKB/TrEMBL
  I3LYA4_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 Abi3bp  ABI family member 3 binding protein  LOC101954763  ABI family member 3 binding protein  Symbol and/or name change 5135510 APPROVED
2021-03-26 LOC101954763  ABI family member 3 binding protein  Abi3bp  ABI family member 3 binding protein  Symbol and/or name change 5135510 APPROVED