Arf4 (ADP-ribosylation factor 4) - Rat Genome Database

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Gene: Arf4 (ADP-ribosylation factor 4) Rattus norvegicus
Analyze
Symbol: Arf4
Name: ADP-ribosylation factor 4
RGD ID: 621275
Description: Predicted to enable several functions, including GTP binding activity; NAD+-protein-arginine ADP-ribosyltransferase activity; and epidermal growth factor receptor binding activity. Involved in epidermal growth factor receptor signaling pathway and response to axon injury. Predicted to be located in several cellular components, including Golgi membrane; dendritic spine; and ruffle membrane. Predicted to be active in cytoplasm; glutamatergic synapse; and plasma membrane. Orthologous to human ARF4 (ADP ribosylation factor 4); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8161,903,238 - 1,920,012 (+)NCBIGRCr8
mRatBN7.2161,896,692 - 1,913,267 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,896,546 - 1,913,261 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,903,319 - 1,919,895 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,049,015 - 3,065,591 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0161,909,772 - 1,926,348 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0162,338,333 - 2,354,909 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl162,338,333 - 2,354,909 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0162,313,358 - 2,330,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,955,745 - 1,972,321 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1161,955,744 - 1,972,321 (+)NCBI
Celera161,865,523 - 1,882,099 (+)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
dendritic spine  (IEA,ISO)
glutamatergic synapse  (IEA,ISO)
Golgi apparatus  (ISO)
Golgi membrane  (IEA,ISO,ISS)
plasma membrane  (IBA,IEA,ISO)
ruffle membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. P-CIP1, a novel protein that interacts with the cytosolic domain of peptidylglycine alpha-amidating monooxygenase, is associated with endosomes. Chen L, etal., J Biol Chem 1998 Dec 11;273(50):33524-32.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ADP-ribosylation factor 4 small GTPase mediates epidermal growth factor receptor-dependent phospholipase D2 activation. Kim SW, etal., J Biol Chem 2003 Jan 24;278(4):2661-8.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Regulation of ADP-ribosylation factor (ARF) expression. Cross-species conservation of the developmental and tissue-specific alternative polyadenylation of ARF 4 mRNA. Mishima K, etal., J Biol Chem 1992 Nov 25;267(33):24109-16.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Interspecies relationships among ADP-ribosylation factors (ARFs): evidence of evolutionary pressure to maintain individual identities. Price SR, etal., Mol Cell Biochem 1996 Jun 7;159(1):15-23.
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. Localization of mRNAs for six ARFs (ADP-ribosylation factors) in the brain of developing and adult rats and changes in the expression in the hypoglossal nucleus after its axotomy. Suzuki I, etal., Brain Res Mol Brain Res. 2001 Mar 31;88(1-2):124-34.
Additional References at PubMed
PMID:1899243   PMID:8947846   PMID:15489334   PMID:19041174   PMID:19946888   PMID:20458337   PMID:20921225   PMID:21700703   PMID:22004728   PMID:23050017   PMID:23376485   PMID:23979707  
PMID:24586199   PMID:24768165   PMID:29476059   PMID:33450132  


Genomics

Comparative Map Data
Arf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8161,903,238 - 1,920,012 (+)NCBIGRCr8
mRatBN7.2161,896,692 - 1,913,267 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,896,546 - 1,913,261 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,903,319 - 1,919,895 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,049,015 - 3,065,591 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0161,909,772 - 1,926,348 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0162,338,333 - 2,354,909 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl162,338,333 - 2,354,909 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0162,313,358 - 2,330,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,955,745 - 1,972,321 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1161,955,744 - 1,972,321 (+)NCBI
Celera161,865,523 - 1,882,099 (+)NCBICelera
Cytogenetic Map16p16NCBI
ARF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38357,571,363 - 57,597,344 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl357,571,363 - 57,598,220 (-)EnsemblGRCh38hg38GRCh38
GRCh37357,557,090 - 57,583,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36357,532,130 - 57,558,118 (-)NCBINCBI36Build 36hg18NCBI36
Build 34357,532,129 - 57,558,118NCBI
Celera357,570,930 - 57,583,662 (-)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef357,654,526 - 57,680,689 (-)NCBIHuRef
CHM1_1357,507,192 - 57,533,313 (-)NCBICHM1_1
T2T-CHM13v2.0357,611,733 - 57,637,720 (-)NCBIT2T-CHM13v2.0
Arf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391426,359,289 - 26,377,997 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1426,359,229 - 26,386,239 (+)EnsemblGRCm39 Ensembl
GRCm381426,638,134 - 26,656,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1426,638,074 - 26,665,084 (+)EnsemblGRCm38mm10GRCm38
MGSCv371427,457,683 - 27,476,744 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361425,471,381 - 25,490,442 (+)NCBIMGSCv36mm8
Celera1422,881,059 - 22,899,926 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.09NCBI
Arf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554307,288,386 - 7,319,449 (-)NCBIChiLan1.0ChiLan1.0
ARF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2257,539,666 - 57,566,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1357,544,439 - 57,571,074 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0357,504,701 - 57,530,545 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1358,710,897 - 58,736,315 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl358,710,897 - 58,736,816 (-)Ensemblpanpan1.1panPan2
ARF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12032,849,725 - 32,871,127 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2032,849,757 - 32,870,721 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2032,777,874 - 32,799,283 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02033,122,306 - 33,143,713 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2033,122,415 - 33,159,515 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12032,578,184 - 32,599,566 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02032,936,246 - 32,957,656 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02033,106,867 - 33,128,487 (+)NCBIUU_Cfam_GSD_1.0
Arf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118174,768,725 - 174,788,135 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364737,907,277 - 7,926,816 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1339,409,376 - 39,430,129 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11339,410,094 - 39,430,177 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21343,338,149 - 43,361,729 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12218,879,064 - 18,904,234 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2218,877,715 - 18,903,891 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041147,967,881 - 147,993,267 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624821346,579 - 362,021 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arf4
43 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:492
Count of miRNA genes:236
Interacting mature miRNAs:284
Transcripts:ENSRNOT00000017692
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)168323802995225Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)168323802995225Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)168323802995225Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)168323802995225Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)168323802995225Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168323804227609Rat

Markers in Region
RH125729  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,912,966 - 1,913,213 (+)MAPPERmRatBN7.2
Rnor_6.0162,354,609 - 2,354,855NCBIRnor6.0
Rnor_5.0162,329,955 - 2,330,201UniSTSRnor5.0
RGSC_v3.4161,972,021 - 1,972,267UniSTSRGSC3.4
Celera161,881,799 - 1,882,045UniSTS
Cytogenetic Map16p16UniSTS
RH129316  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,912,978 - 1,913,143 (+)MAPPERmRatBN7.2
Rnor_6.0162,354,621 - 2,354,785NCBIRnor6.0
Rnor_5.0162,329,967 - 2,330,131UniSTSRnor5.0
RGSC_v3.4161,972,033 - 1,972,197UniSTSRGSC3.4
Celera161,881,811 - 1,881,975UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH129652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,913,052 - 1,913,245 (+)MAPPERmRatBN7.2
Rnor_6.0162,354,695 - 2,354,887NCBIRnor6.0
Rnor_5.0162,330,041 - 2,330,233UniSTSRnor5.0
RGSC_v3.4161,972,107 - 1,972,299UniSTSRGSC3.4
Celera161,881,885 - 1,882,077UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
AW533731  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,896,445 - 1,896,636 (+)MAPPERmRatBN7.2
Rnor_6.0162,338,087 - 2,338,277NCBIRnor6.0
Rnor_5.0162,313,112 - 2,313,302UniSTSRnor5.0
RGSC_v3.4161,955,499 - 1,955,689UniSTSRGSC3.4
Celera161,865,277 - 1,865,467UniSTS
Cytogenetic Map16p16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000017692   ⟹   ENSRNOP00000017692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,896,626 - 1,913,261 (+)Ensembl
Rnor_6.0 Ensembl162,338,333 - 2,354,909 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104253   ⟹   ENSRNOP00000077700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,896,546 - 1,911,447 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117367   ⟹   ENSRNOP00000094601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,896,908 - 1,913,261 (+)Ensembl
RefSeq Acc Id: NM_024151   ⟹   NP_077065
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,903,436 - 1,920,012 (+)NCBI
mRatBN7.2161,896,692 - 1,913,267 (+)NCBI
Rnor_6.0162,338,333 - 2,354,909 (+)NCBI
Rnor_5.0162,313,358 - 2,330,255 (+)NCBI
RGSC_v3.4161,955,745 - 1,972,321 (+)RGD
Celera161,865,523 - 1,882,099 (+)RGD
Sequence:
RefSeq Acc Id: XM_063275756   ⟹   XP_063131826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,903,238 - 1,919,475 (+)NCBI
RefSeq Acc Id: NP_077065   ⟸   NM_024151
- UniProtKB: P61751 (UniProtKB/Swiss-Prot),   A6KMJ6 (UniProtKB/TrEMBL),   A0A8I6AL60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017692   ⟸   ENSRNOT00000017692
RefSeq Acc Id: ENSRNOP00000094601   ⟸   ENSRNOT00000117367
RefSeq Acc Id: ENSRNOP00000077700   ⟸   ENSRNOT00000104253
RefSeq Acc Id: XP_063131826   ⟸   XM_063275756
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P61751-F1-model_v2 AlphaFold P61751 1-180 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699895
Promoter ID:EPDNEW_R10419
Type:initiation region
Name:Arf4_1
Description:ADP-ribosylation factor 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0162,338,372 - 2,338,432EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621275 AgrOrtholog
BioCyc Gene G2FUF-12252 BioCyc
Ensembl Genes ENSRNOG00000012623 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055021532 UniProtKB/Swiss-Prot
  ENSRNOG00060013369 UniProtKB/Swiss-Prot
  ENSRNOG00065014219 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000017692 ENTREZGENE
  ENSRNOT00000017692.6 UniProtKB/Swiss-Prot
  ENSRNOT00000104253.1 UniProtKB/TrEMBL
  ENSRNOT00000117367.1 UniProtKB/TrEMBL
  ENSRNOT00055036788 UniProtKB/Swiss-Prot
  ENSRNOT00060022774 UniProtKB/Swiss-Prot
  ENSRNOT00065023462 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921397 IMAGE-MGC_LOAD
InterPro Arf1-5-like UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase_ARF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:79120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72808 IMAGE-MGC_LOAD
NCBI Gene 79120 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11711 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Arf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB ARF4 RGD
PhenoGen Arf4 PhenoGen
PRINTS SAR1GTPBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ARF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012623 RatGTEx
  ENSRNOG00055021532 RatGTEx
  ENSRNOG00060013369 RatGTEx
  ENSRNOG00065014219 RatGTEx
SMART ARF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZJK0_RAT UniProtKB/TrEMBL
  A0A8I6AL60 ENTREZGENE, UniProtKB/TrEMBL
  A6KMJ6 ENTREZGENE, UniProtKB/TrEMBL
  ARF4_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary P36403 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Arf4  ADP-ribosylation factor 4      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Arf4  ADP-ribosylation factor 4      Symbol and Name status set to provisional 70820 PROVISIONAL