Zmynd8 (zinc finger, MYND-type containing 8) - Rat Genome Database

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Gene: Zmynd8 (zinc finger, MYND-type containing 8) Rattus norvegicus
Analyze
Symbol: Zmynd8
Name: zinc finger, MYND-type containing 8
RGD ID: 1309544
Description: Predicted to enable several functions, including histone H3 reader activity; transcription corepressor activity; and zinc ion binding activity. Involved in several processes, including positive regulation of dendritic spine development; positive regulation of filopodium assembly; and regulation of postsynapse organization. Located in dendritic shaft and dendritic spine. Orthologous to human ZMYND8 (zinc finger MYND-type containing 8); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC296374; MYND-type zinc finger-containing chromatin reader ZMYND8; Prkcbp1; protein kinase C binding protein 1; protein kinase C-binding protein 1; spikar; spikar delta C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,948,162 - 175,061,382 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3174,948,537 - 175,061,571 (-)EnsemblGRCr8
mRatBN7.23154,528,917 - 154,629,532 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3154,529,043 - 154,628,463 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3158,334,100 - 158,431,277 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03166,833,091 - 166,930,269 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03164,574,727 - 164,671,904 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03162,480,766 - 162,594,145 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3162,480,804 - 162,581,610 (-)Ensemblrn6Rnor6.0
Rnor_5.03168,658,022 - 168,771,422 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43156,860,459 - 156,957,748 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3153,120,868 - 153,217,849 (-)NCBICelera
RGSC_v3.13156,766,803 - 156,865,056 (-)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium silicate  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
finasteride  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gallic acid  (ISO)
genistein  (EXP)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
methamphetamine  (ISO)
methylmercury chloride  (ISO)
nicotine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
versicolorin A  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA,ISO)
chromosome  (IEA)
cytoplasm  (IBA,IEA,ISO)
dendritic shaft  (IDA)
dendritic spine  (IDA)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
site of DNA damage  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Spikar, a novel drebrin-binding protein, regulates the formation and stabilization of dendritic spines. Yamazaki H, etal., J Neurochem. 2014 Feb;128(4):507-22. doi: 10.1111/jnc.12486. Epub 2013 Nov 13.
Additional References at PubMed
PMID:12477932   PMID:27477906   PMID:28966017  


Genomics

Comparative Map Data
Zmynd8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,948,162 - 175,061,382 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3174,948,537 - 175,061,571 (-)EnsemblGRCr8
mRatBN7.23154,528,917 - 154,629,532 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3154,529,043 - 154,628,463 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3158,334,100 - 158,431,277 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03166,833,091 - 166,930,269 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03164,574,727 - 164,671,904 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03162,480,766 - 162,594,145 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3162,480,804 - 162,581,610 (-)Ensemblrn6Rnor6.0
Rnor_5.03168,658,022 - 168,771,422 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43156,860,459 - 156,957,748 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3153,120,868 - 153,217,849 (-)NCBICelera
RGSC_v3.13156,766,803 - 156,865,056 (-)NCBI
Cytogenetic Map3q42NCBI
ZMYND8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382047,209,214 - 47,356,699 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2047,209,214 - 47,356,889 (-)Ensemblhg38GRCh38
GRCh372045,837,859 - 45,985,443 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362045,271,788 - 45,418,881 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342045,271,787 - 45,418,881NCBI
Celera2042,552,068 - 42,699,142 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2042,581,845 - 42,728,430 (-)NCBIHuRef
CHM1_12045,741,275 - 45,888,362 (-)NCBICHM1_1
T2T-CHM13v2.02048,947,314 - 49,094,980 (-)NCBIT2T-CHM13v2.0
Zmynd8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392165,626,072 - 165,740,896 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2165,626,072 - 165,740,936 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382165,784,152 - 165,898,981 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2165,784,152 - 165,899,016 (-)Ensemblmm10GRCm38
MGSCv372165,609,654 - 165,710,188 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362165,476,506 - 165,588,155 (-)NCBIMGSCv36mm8
Celera2171,721,138 - 171,822,027 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.98NCBI
Zmynd8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544510,229,902 - 10,363,350 (+)Ensembl
ChiLan1.0NW_00495544510,226,031 - 10,361,371 (+)NCBIChiLan1.0ChiLan1.0
ZMYND8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22152,943,925 - 53,104,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12052,937,030 - 53,097,569 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02043,540,819 - 43,701,322 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12044,624,487 - 44,784,920 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2044,624,487 - 44,772,032 (-)EnsemblpanPan2panpan1.1
ZMYND8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12434,322,364 - 34,466,044 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2434,321,570 - 34,485,544 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2433,781,364 - 33,924,600 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02435,030,998 - 35,174,588 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2435,032,085 - 35,157,509 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12434,286,297 - 34,429,942 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02434,404,299 - 34,548,003 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02434,944,918 - 35,088,181 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zmynd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640190,662,525 - 190,760,665 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365146,116,676 - 6,212,996 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365146,116,789 - 6,214,383 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYND8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1749,258,542 - 49,390,399 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11749,258,543 - 49,390,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21755,169,682 - 55,300,653 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZMYND8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1216,547,144 - 16,696,729 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl216,622,702 - 16,696,878 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605065,181,903 - 65,331,185 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmynd8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247907,493,066 - 7,611,485 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247907,473,739 - 7,611,612 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Zmynd8
416 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:30
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000068328
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145956084157309487Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3145956084161299569Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat

Markers in Region
RH144094  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23154,617,229 - 154,617,446 (+)MAPPERmRatBN7.2
Rnor_6.03162,569,407 - 162,569,623NCBIRnor6.0
Rnor_5.03168,746,663 - 168,746,879UniSTSRnor5.0
RGSC_v3.43156,947,729 - 156,947,945UniSTSRGSC3.4
Celera3153,208,109 - 153,208,325UniSTS
RH 3.4 Map31439.1UniSTS
Cytogenetic Map3q42UniSTS
RH136665  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23154,625,974 - 154,626,157 (+)MAPPERmRatBN7.2
Rnor_6.03162,578,010 - 162,578,192NCBIRnor6.0
Rnor_5.03168,755,266 - 168,755,448UniSTSRnor5.0
RGSC_v3.43156,956,557 - 156,956,739UniSTSRGSC3.4
Celera3153,216,658 - 153,216,840UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB074010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB721962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000068328   ⟹   ENSRNOP00000061219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,949,238 - 175,046,437 (-)Ensembl
mRatBN7.2 Ensembl3154,529,993 - 154,627,166 (-)Ensembl
Rnor_6.0 Ensembl3162,481,840 - 162,579,201 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079324   ⟹   ENSRNOP00000074980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,948,537 - 175,042,989 (-)Ensembl
mRatBN7.2 Ensembl3154,529,043 - 154,619,951 (-)Ensembl
Rnor_6.0 Ensembl3162,480,804 - 162,581,610 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095551   ⟹   ENSRNOP00000085133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,949,238 - 175,047,902 (-)Ensembl
mRatBN7.2 Ensembl3154,529,993 - 154,594,329 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103653   ⟹   ENSRNOP00000084382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,948,537 - 175,020,871 (-)Ensembl
mRatBN7.2 Ensembl3154,529,993 - 154,623,533 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114990   ⟹   ENSRNOP00000085787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,948,537 - 175,047,902 (-)Ensembl
mRatBN7.2 Ensembl3154,529,043 - 154,623,533 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116131   ⟹   ENSRNOP00000076397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,948,537 - 175,061,571 (-)Ensembl
mRatBN7.2 Ensembl3154,529,043 - 154,628,463 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168449   ⟹   ENSRNOP00000104801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3174,948,537 - 175,020,763 (-)Ensembl
RefSeq Acc Id: NM_001100838   ⟹   NP_001094308
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,949,229 - 175,046,437 (-)NCBI
mRatBN7.23154,529,984 - 154,627,166 (-)NCBI
Rnor_6.03162,481,833 - 162,579,201 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
RGSC_v3.43156,860,459 - 156,957,748 (-)RGD
Celera3153,120,868 - 153,217,849 (-)RGD
Sequence:
RefSeq Acc Id: XM_006235541   ⟹   XP_006235603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
mRatBN7.23154,528,917 - 154,629,531 (-)NCBI
Rnor_6.03162,480,766 - 162,581,590 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235542   ⟹   XP_006235604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,038,856 (-)NCBI
mRatBN7.23154,528,917 - 154,601,359 (-)NCBI
Rnor_6.03162,480,766 - 162,553,299 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235555   ⟹   XP_006235617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
mRatBN7.23154,528,917 - 154,629,531 (-)NCBI
Rnor_6.03162,480,766 - 162,581,590 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235559   ⟹   XP_006235621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
mRatBN7.23154,528,917 - 154,629,530 (-)NCBI
Rnor_6.03162,480,766 - 162,581,588 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235560   ⟹   XP_006235622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,020,855 (-)NCBI
mRatBN7.23154,528,917 - 154,601,359 (-)NCBI
Rnor_6.03162,480,766 - 162,553,299 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235564   ⟹   XP_006235626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
mRatBN7.23154,528,917 - 154,629,529 (-)NCBI
Rnor_6.03162,480,766 - 162,581,588 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235565   ⟹   XP_006235627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
mRatBN7.23154,528,917 - 154,629,529 (-)NCBI
Rnor_6.03162,480,766 - 162,581,588 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235567   ⟹   XP_006235629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
mRatBN7.23154,528,917 - 154,629,529 (-)NCBI
Rnor_6.03162,480,766 - 162,581,588 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235569   ⟹   XP_006235631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
mRatBN7.23154,528,917 - 154,629,531 (-)NCBI
Rnor_6.03162,480,766 - 162,581,588 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235571   ⟹   XP_006235633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
mRatBN7.23154,528,917 - 154,629,531 (-)NCBI
Rnor_6.03162,480,766 - 162,581,588 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235572   ⟹   XP_006235634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,000,373 (-)NCBI
mRatBN7.23154,528,917 - 154,581,094 (-)NCBI
Rnor_6.03162,480,766 - 162,533,076 (-)NCBI
Rnor_5.03168,658,022 - 168,771,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591609   ⟹   XP_017447098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,044,488 (-)NCBI
mRatBN7.23154,528,917 - 154,625,237 (-)NCBI
Rnor_6.03162,480,766 - 162,577,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591613   ⟹   XP_017447102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,046,827 (-)NCBI
mRatBN7.23154,528,917 - 154,627,217 (-)NCBI
Rnor_6.03162,480,766 - 162,579,805 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104633   ⟹   XP_038960561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,044,488 (-)NCBI
mRatBN7.23154,528,917 - 154,622,745 (-)NCBI
RefSeq Acc Id: XM_063283395   ⟹   XP_063139465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,173 (-)NCBI
RefSeq Acc Id: XM_063283396   ⟹   XP_063139466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,044,488 (-)NCBI
RefSeq Acc Id: XM_063283397   ⟹   XP_063139467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,020,856 (-)NCBI
RefSeq Acc Id: XM_063283398   ⟹   XP_063139468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
RefSeq Acc Id: XM_063283400   ⟹   XP_063139470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
RefSeq Acc Id: XM_063283401   ⟹   XP_063139471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,006,968 (-)NCBI
RefSeq Acc Id: XM_063283402   ⟹   XP_063139472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,061,382 (-)NCBI
RefSeq Acc Id: XM_063283403   ⟹   XP_063139473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,020,855 (-)NCBI
RefSeq Acc Id: XM_063283404   ⟹   XP_063139474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,044,489 (-)NCBI
RefSeq Acc Id: XM_063283405   ⟹   XP_063139475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,020,855 (-)NCBI
RefSeq Acc Id: XM_063283406   ⟹   XP_063139476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,061,382 (-)NCBI
RefSeq Acc Id: XM_063283407   ⟹   XP_063139477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,048,817 (-)NCBI
RefSeq Acc Id: XM_063283408   ⟹   XP_063139478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,038,806 (-)NCBI
RefSeq Acc Id: XM_063283409   ⟹   XP_063139479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,948,162 - 175,014,239 (-)NCBI
RefSeq Acc Id: XM_063283410   ⟹   XP_063139480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,987,784 - 175,061,382 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001094308 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418463 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418464 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418465 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418466 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418467 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418468 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418469 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418470 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418471 (Get FASTA)   NCBI Sequence Viewer  
  NP_001418472 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235603 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235604 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235617 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235621 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235622 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235626 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235627 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235629 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235631 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235633 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235634 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447098 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447102 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960561 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139465 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139466 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139467 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139468 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139470 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139471 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139472 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139473 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139474 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139475 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139476 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139477 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139478 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139479 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139480 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83796 (Get FASTA)   NCBI Sequence Viewer  
  BAF81490 (Get FASTA)   NCBI Sequence Viewer  
  BAM48922 (Get FASTA)   NCBI Sequence Viewer  
  EDL96446 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061219
  ENSRNOP00000061219.1
  ENSRNOP00000074980
  ENSRNOP00000074980.2
  ENSRNOP00000076397
  ENSRNOP00000076397.1
  ENSRNOP00000084382
  ENSRNOP00000084382.1
  ENSRNOP00000085133.1
  ENSRNOP00000085787
  ENSRNOP00000085787.1
  ENSRNOP00000104801
RefSeq Acc Id: NP_001094308   ⟸   NM_001100838
- UniProtKB: A8C4G9 (UniProtKB/TrEMBL),   A0A8I5ZX36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235603   ⟸   XM_006235541
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006235626   ⟸   XM_006235564
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006235617   ⟸   XM_006235555
- Peptide Label: isoform X6
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235631   ⟸   XM_006235569
- Peptide Label: isoform X21
- UniProtKB: A0A0G2K9F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235627   ⟸   XM_006235565
- Peptide Label: isoform X17
- UniProtKB: A0A0G2K9F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235621   ⟸   XM_006235559
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006235633   ⟸   XM_006235571
- Peptide Label: isoform X23
- UniProtKB: A0A0G2K9F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235629   ⟸   XM_006235567
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_006235622   ⟸   XM_006235560
- Peptide Label: isoform X10
- UniProtKB: A0A0G2K9F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235604   ⟸   XM_006235542
- Peptide Label: isoform X3
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235634   ⟸   XM_006235572
- Peptide Label: isoform X24
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447102   ⟸   XM_017591613
- Peptide Label: isoform X4
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447098   ⟸   XM_017591609
- Peptide Label: isoform X1
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074980   ⟸   ENSRNOT00000079324
Ensembl Acc Id: ENSRNOP00000061219   ⟸   ENSRNOT00000068328
RefSeq Acc Id: XP_038960561   ⟸   XM_039104633
- Peptide Label: isoform X4
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084382   ⟸   ENSRNOT00000103653
Ensembl Acc Id: ENSRNOP00000085787   ⟸   ENSRNOT00000114990
Ensembl Acc Id: ENSRNOP00000085133   ⟸   ENSRNOT00000095551
Ensembl Acc Id: ENSRNOP00000076397   ⟸   ENSRNOT00000116131
RefSeq Acc Id: XP_063139476   ⟸   XM_063283406
- Peptide Label: isoform X20
- UniProtKB: A0A0G2K9F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139472   ⟸   XM_063283402
- Peptide Label: isoform X13
- UniProtKB: A0A0G2K9F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139477   ⟸   XM_063283407
- Peptide Label: isoform X22
- UniProtKB: A0A0G2K9F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139470   ⟸   XM_063283400
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063139468   ⟸   XM_063283398
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZX36 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139465   ⟸   XM_063283395
- Peptide Label: isoform X2
- UniProtKB: A0A8I5XZV4 (UniProtKB/TrEMBL),   A6JXG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139474   ⟸   XM_063283404
- Peptide Label: isoform X16
- UniProtKB: A0A0G2K9F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139466   ⟸   XM_063283396
- Peptide Label: isoform X5
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139478   ⟸   XM_063283408
- Peptide Label: isoform X12
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139467   ⟸   XM_063283397
- Peptide Label: isoform X7
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139475   ⟸   XM_063283405
- Peptide Label: isoform X18
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139473   ⟸   XM_063283403
- Peptide Label: isoform X15
- UniProtKB: A0A0G2K9F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139479   ⟸   XM_063283409
- Peptide Label: isoform X12
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139471   ⟸   XM_063283401
- Peptide Label: isoform X12
- UniProtKB: A6JXG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139480   ⟸   XM_063283410
- Peptide Label: isoform X25
- UniProtKB: Q5XI91 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104801   ⟸   ENSRNOT00000168449
Protein Domains
Bromo   MYND-type   PHD-type   PWWP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A8C4G9-F1-model_v2 AlphaFold A8C4G9 1-1208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692679
Promoter ID:EPDNEW_R3204
Type:initiation region
Name:Zmynd8_1
Description:zinc finger, MYND-type containing 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3205  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03162,580,474 - 162,580,534EPDNEW
RGD ID:13692681
Promoter ID:EPDNEW_R3205
Type:multiple initiation site
Name:Zmynd8_2
Description:zinc finger, MYND-type containing 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3204  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03162,581,586 - 162,581,646EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309544 AgrOrtholog
BioCyc Gene G2FUF-46793 BioCyc
Ensembl Genes ENSRNOG00000019154 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068328 ENTREZGENE
  ENSRNOT00000068328.3 UniProtKB/TrEMBL
  ENSRNOT00000079324 ENTREZGENE
  ENSRNOT00000079324.2 UniProtKB/TrEMBL
  ENSRNOT00000095551.1 UniProtKB/TrEMBL
  ENSRNOT00000103653 ENTREZGENE
  ENSRNOT00000103653.1 UniProtKB/TrEMBL
  ENSRNOT00000114990 ENTREZGENE
  ENSRNOT00000114990.1 UniProtKB/TrEMBL
  ENSRNOT00000116131 ENTREZGENE
  ENSRNOT00000116131.1 UniProtKB/TrEMBL
  ENSRNOT00000168449 ENTREZGENE
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  6.10.140.2220 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7108481 IMAGE-MGC_LOAD
InterPro Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  DUF3544 UniProtKB/TrEMBL
  MYND_ZMYND11_ZMYD8 UniProtKB/TrEMBL
  PRKCBP1_PHD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  RACK7_Bromo_dom UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  ZMYND8_CC UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_MYND UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:296374 UniProtKB/TrEMBL
MGC_CLONE MGC:94817 IMAGE-MGC_LOAD
NCBI Gene 296374 ENTREZGENE
PANTHER PROTEIN KINASE C-BINDING PROTEIN 1 UniProtKB/TrEMBL
  PROTEIN KINASE C-BINDING PROTEIN 1 UniProtKB/TrEMBL
  PROTEIN KINASE C-BINDING PROTEIN 1 ISOFORM X1 UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  DUF3544 UniProtKB/TrEMBL
  MYND_ZMYND11_ZMYD8 UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  ZMYND8_CC UniProtKB/TrEMBL
PhenoGen Zmynd8 PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_2 UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  ZF_MYND_1 UniProtKB/TrEMBL
  ZF_MYND_2 UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019154 RatGTEx
SMART BROMO UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  FYVE_PHD_ZnF UniProtKB/TrEMBL
  HIT/MYND zinc finger-like UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A0G2K9F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5XZV4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZX36 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZH4_RAT UniProtKB/TrEMBL
  A0A8I6A294_RAT UniProtKB/TrEMBL
  A6JXG1 ENTREZGENE, UniProtKB/TrEMBL
  A8C4G9 ENTREZGENE, UniProtKB/TrEMBL
  K0J5S5 ENTREZGENE, UniProtKB/TrEMBL
  Q5XI91 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-01-14 Zmynd8  zinc finger, MYND-type containing 8  Prkcbp1  protein kinase C binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Prkcbp1  protein kinase C binding protein 1  Prkcbp1_predicted  protein kinase C binding protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Prkcbp1_predicted  protein kinase C binding protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED