 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
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 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | GOA data from the GO Consortium |
| 2. | RGD automated data pipeline |
| 3. | RGD automated import pipeline for gene-chemical interactions |
| 4. | Yamazaki H, etal., J Neurochem. 2014 Feb;128(4):507-22. doi: 10.1111/jnc.12486. Epub 2013 Nov 13. |
References - uncuratedGenomics
Comparative Map Data| Zmynd8 (Rattus norvegicus - Norway rat) |
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| ZMYND8 (Homo sapiens - human) |
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| Zmynd8 (Mus musculus - house mouse) |
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| Zmynd8 (Chinchilla lanigera - long-tailed chinchilla) |
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| ZMYND8 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ZMYND8 (Canis lupus familiaris - dog) |
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| Zmynd8 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| ZMYND8 (Sus scrofa - pig) |
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| ZMYND8 (Chlorocebus sabaeus - African green monkey) |
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| Zmynd8 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| RH144094 |
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| RH136665 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 33 | 43 | 27 | 19 | 27 | 1 | 3 | 74 | 35 | 34 | 11 | 1 |
| Low | 10 | 14 | 14 | 14 | 7 | 8 | 7 | 7 | |||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001100838 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006235536 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235537 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235538 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235539 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235540 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235541 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235542 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235543 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235544 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235546 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235549 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235552 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235553 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235554 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235555 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235557 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235559 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235560 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235562 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235563 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235564 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235565 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235567 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235568 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235569 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235571 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235572 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006235573 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008762479 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008762480 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008762482 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591609 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591610 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591611 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591612 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591613 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591614 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591615 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07054585 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07054586 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01026424 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01026425 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01026426 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01026427 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01026428 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01026429 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01026430 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB074010 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB721962 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC083796 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH474005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ227520 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ231886 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ232424 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000068328 ⟹ ENSRNOP00000061219 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000079324 ⟹ ENSRNOP00000074980 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001100838 ⟹ NP_001094308 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
GAGACGGTTGCTTGAACGTGTGTTGGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGhide sequence |
| RefSeq Acc Id: | XM_006235536 ⟹ XP_006235598 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GCCAGGGGTTGAAGATGTCGGGAAGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGThide sequence |
| RefSeq Acc Id: | XM_006235537 ⟹ XP_006235599 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GCCAGGGGTTGAAGATGTCGGGAAGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGThide sequence |
| RefSeq Acc Id: | XM_006235538 ⟹ XP_006235600 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CTCTCCCGTTTAAGACCTTCCAAGATGGGTACACCATTCTCCTTCGGGAGATGAAGTGGCTTTChide sequence |
| RefSeq Acc Id: | XM_006235539 ⟹ XP_006235601 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CTCTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGChide sequence |
| RefSeq Acc Id: | XM_006235540 ⟹ XP_006235602 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
TGACTCTCTGCTTGTTCTCTCTGCTTCCTCCTCCCCCTGGGAGAGGCTGCTGAGGAGCCGGAAGhide sequence |
| RefSeq Acc Id: | XM_006235541 ⟹ XP_006235603 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CTCTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGChide sequence |
| RefSeq Acc Id: | XM_006235542 ⟹ XP_006235604 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
TGACTCTCTGCTTGTTCTCTCTGCTTCCTCCTCCCCCTGGGAGAGGCTGCTGAGGAGCCGGAAGhide sequence |
| RefSeq Acc Id: | XM_006235543 ⟹ XP_006235605 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GCCAGGGGTTGAAGATGTCGGGAAGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGThide sequence |
| RefSeq Acc Id: | XM_006235544 ⟹ XP_006235606 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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||||||||||||
| Sequence: |
GCCAGGGGTTGAAGATGTCGGGAAGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGThide sequence |
| RefSeq Acc Id: | XM_006235546 ⟹ XP_006235608 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GGTGTTGTGTGGACTGTTCTCTTCCTCTCCAGAGCTTTGCACTTGCAACAACATTGTTCAGCCThide sequence |
| RefSeq Acc Id: | XM_006235549 ⟹ XP_006235611 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CAGAAGGTCTTCTCCCCAGCACAGTTCAGGACTGCCTGTGGCAGATAATCAGGGCAAGCAAGCChide sequence |
| RefSeq Acc Id: | XM_006235552 ⟹ XP_006235614 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
CAGAAGGTCTTCTCCCCAGCACAGTTCAGGACTGCCTGTGGCAGATAATCAGGGCAAGCAAGCChide sequence |
| RefSeq Acc Id: | XM_006235553 ⟹ XP_006235615 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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||||||||||||
| Sequence: |
GGGGGGGTGGGTGGGGAATTACTGGGTTCGTTGTGACTTGCAGCTAGACCTTGAATTGTGTTTGhide sequence |
| RefSeq Acc Id: | XM_006235554 ⟹ XP_006235616 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CTCTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGChide sequence |
| RefSeq Acc Id: | XM_006235555 ⟹ XP_006235617 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CTCTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGChide sequence |
| RefSeq Acc Id: | XM_006235557 ⟹ XP_006235619 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
CCAGGGGTTGAAGATGTCGGGAAGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGTGhide sequence |
| RefSeq Acc Id: | XM_006235559 ⟹ XP_006235621 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGCAAhide sequence |
| RefSeq Acc Id: | XM_006235560 ⟹ XP_006235622 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
TGACTCTCTGCTTGTTCTCTCTGCTTCCTCCTCCCCCTGGGAGAGGCTGCTGAGGAGCCGGAAGhide sequence |
| RefSeq Acc Id: | XM_006235562 ⟹ XP_006235624 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CCAGGGGTTGAAGATGTCGGGAAGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGTGhide sequence |
| RefSeq Acc Id: | XM_006235563 ⟹ XP_006235625 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
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| Sequence: |
AGCCAGGGGTTGAAGATGTCGGGAAGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGhide sequence |
| RefSeq Acc Id: | XM_006235564 ⟹ XP_006235626 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
CTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGCAAhide sequence |
| RefSeq Acc Id: | XM_006235565 ⟹ XP_006235627 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
CTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGCAAhide sequence |
| RefSeq Acc Id: | XM_006235567 ⟹ XP_006235629 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
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| Sequence: |
CTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGCAAhide sequence |
| RefSeq Acc Id: | XM_006235568 ⟹ XP_006235630 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
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| Sequence: |
AGCCAGGGGTTGAAGATGTCGGGAAGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGhide sequence |
| RefSeq Acc Id: | XM_006235569 ⟹ XP_006235631 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
CTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGCAAhide sequence |
| RefSeq Acc Id: | XM_006235571 ⟹ XP_006235633 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
CTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGCAAhide sequence |
| RefSeq Acc Id: | XM_006235572 ⟹ XP_006235634 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
CTCTTCCCCAGAGCCAGGCTGTAGTAGCACAGGCTTGCTCATTCCTTCCCCTGCTCTAGCTCCAhide sequence |
| RefSeq Acc Id: | XM_006235573 ⟹ XP_006235635 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
CTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGCAATChide sequence |
| RefSeq Acc Id: | XM_008762479 ⟹ XP_008760701 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
CTCTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGChide sequence |
| RefSeq Acc Id: | XM_008762480 ⟹ XP_008760702 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GGGGGGGGTGGGTGGGGAATTACTGGGTTCGTTGTGACTTGCAGCTAGACCTTGAATTGTGTTThide sequence |
| RefSeq Acc Id: | XM_008762482 ⟹ XP_008760704 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
CTCTCTCTTTCTGCATCTGCCCGGAGAGAGCTGCAGCTGGTATTTTTCCACAGGCCTTTTCTGChide sequence |
| RefSeq Acc Id: | XM_017591609 ⟹ XP_017447098 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
CTCTCCCGTTTAAGACCTTCCAAGATGGGTACACCATTCTCCTTCGGGAGATGAAGTGGCTTTChide sequence |
| RefSeq Acc Id: | XM_017591610 ⟹ XP_017447099 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
TCCTCTCCCCTGCACTGTTGTCTGTTGTATGTCACATGCCTGCTGGGGGAAGAAAATGGAAGCThide sequence |
| RefSeq Acc Id: | XM_017591611 ⟹ XP_017447100 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
TCGGCTTTTTAACCATCTTTTACCCCTCCCTCTGAGTCATCCGAGTCGTGGAGTAGCAGTGTGAhide sequence |
| RefSeq Acc Id: | XM_017591612 ⟹ XP_017447101 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
TCCTCTCCCCTGCACTGTTGTCTGTTGTATGTCACATGCCTGCTGGGGGAAGAAAATGGAAGCThide sequence |
| RefSeq Acc Id: | XM_017591613 ⟹ XP_017447102 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GGTGTTGTGTGGACTGTTCTCTTCCTCTCCAGAGCTTTGCACTTGCAACAACATTGTTCAGCCThide sequence |
| RefSeq Acc Id: | XM_017591614 ⟹ XP_017447103 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
TCGGCTTTTTAACCATCTTTTACCCCTCCCTCTGAGTCATCCGAGTCGTGGAGTAGCAGTGTGAhide sequence |
| RefSeq Acc Id: | XM_017591615 ⟹ XP_017447104 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GCCAGGGGTTGAAGATGTCGGGAAGCTTGGCTGAAGAGGAGATAAAAACGGAGCAGGAGGTGGThide sequence |
Protein Sequences| Protein RefSeqs | NP_001094308 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006235598 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235599 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235600 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235601 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235602 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235603 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235604 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235605 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235606 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235608 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235611 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235614 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235615 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235616 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235617 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235619 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235621 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235622 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235624 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235625 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235626 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235627 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235629 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235630 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235631 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235633 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235634 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006235635 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008760701 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008760702 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008760704 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447098 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447099 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447100 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447101 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447102 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447103 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447104 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH83796 | (Get FASTA) | NCBI Sequence Viewer |
| BAF81490 | (Get FASTA) | NCBI Sequence Viewer | |
| BAM48922 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL96446 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001094308 ⟸ NM_001100838 |
| - UniProtKB: | A8C4G9 (UniProtKB/TrEMBL) |
| - Sequence: |
MDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSELRHGhide sequence |
| RefSeq Acc Id: | XP_006235599 ⟸ XM_006235537 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MSGSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKhide sequence |
| RefSeq Acc Id: | XP_006235624 ⟸ XM_006235562 |
| - Peptide Label: | isoform X19 |
| - Sequence: |
MSGSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPhide sequence |
| RefSeq Acc Id: | XP_006235605 ⟸ XM_006235543 |
| - Peptide Label: | isoform X9 |
| - Sequence: |
MSGSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPhide sequence |
| RefSeq Acc Id: | XP_006235630 ⟸ XM_006235568 |
| - Peptide Label: | isoform X24 |
| - Sequence: |
MSGSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPhide sequence |
| RefSeq Acc Id: | XP_006235625 ⟸ XM_006235563 |
| - Peptide Label: | isoform X20 |
| - Sequence: |
MSGSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPhide sequence |
| RefSeq Acc Id: | XP_006235619 ⟸ XM_006235557 |
| - Peptide Label: | isoform X15 |
| - Sequence: |
MSGSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPhide sequence |
| RefSeq Acc Id: | XP_006235606 ⟸ XM_006235544 |
| - Peptide Label: | isoform X10 |
| - Sequence: |
MSGSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPhide sequence |
| RefSeq Acc Id: | XP_006235598 ⟸ XM_006235536 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MSGSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPhide sequence |
| RefSeq Acc Id: | XP_006235603 ⟸ XM_006235541 |
| - Peptide Label: | isoform X7 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235616 ⟸ XM_006235554 |
| - Peptide Label: | isoform X13 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTShide sequence |
| RefSeq Acc Id: | XP_006235601 ⟸ XM_006235539 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTShide sequence |
| RefSeq Acc Id: | XP_006235626 ⟸ XM_006235564 |
| - Peptide Label: | isoform X21 |
| - UniProtKB: | A0A0G2K9F7 (UniProtKB/TrEMBL) |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235617 ⟸ XM_006235555 |
| - Peptide Label: | isoform X14 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235631 ⟸ XM_006235569 |
| - Peptide Label: | isoform X25 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235627 ⟸ XM_006235565 |
| - Peptide Label: | isoform X22 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235621 ⟸ XM_006235559 |
| - Peptide Label: | isoform X17 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235633 ⟸ XM_006235571 |
| - Peptide Label: | isoform X26 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235629 ⟸ XM_006235567 |
| - Peptide Label: | isoform X23 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235614 ⟸ XM_006235552 |
| - Peptide Label: | isoform X12 |
| - Sequence: |
MDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSELRHGhide sequence |
| RefSeq Acc Id: | XP_006235611 ⟸ XM_006235549 |
| - Peptide Label: | isoform X11 |
| - Sequence: |
MDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSEhide sequence |
| RefSeq Acc Id: | XP_006235608 ⟸ XM_006235546 |
| - Peptide Label: | isoform X11 |
| - Sequence: |
MDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSEhide sequence |
| RefSeq Acc Id: | XP_006235615 ⟸ XM_006235553 |
| - Peptide Label: | isoform X12 |
| - Sequence: |
MDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSELRHGhide sequence |
| RefSeq Acc Id: | XP_006235600 ⟸ XM_006235538 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MTARFSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSThide sequence |
| RefSeq Acc Id: | XP_006235622 ⟸ XM_006235560 |
| - Peptide Label: | isoform X18 |
| - Sequence: |
MSAAGSLLLSSFGTEEPGSLSGQAASMADPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235604 ⟸ XM_006235542 |
| - Peptide Label: | isoform X8 |
| - Sequence: |
MSAAGSLLLSSFGTEEPGSLSGQAASMADPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKhide sequence |
| RefSeq Acc Id: | XP_006235602 ⟸ XM_006235540 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MSAAGSLLLSSFGTEEPGSLSGQAASMADPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTShide sequence |
| RefSeq Acc Id: | XP_006235634 ⟸ XM_006235572 |
| - Peptide Label: | isoform X27 |
| - Sequence: |
MYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHEMNEIEVCPECYLAACQKRDNWhide sequence |
| RefSeq Acc Id: | XP_006235635 ⟸ XM_006235573 |
| - Peptide Label: | isoform X28 |
| - Sequence: |
MHPQSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTShide sequence |
| RefSeq Acc Id: | XP_008760701 ⟸ XM_008762479 |
| - Peptide Label: | isoform X11 |
| - Sequence: |
MDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSEhide sequence |
| RefSeq Acc Id: | XP_008760704 ⟸ XM_008762482 |
| - Peptide Label: | isoform X12 |
| - Sequence: |
MDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSELRHGhide sequence |
| RefSeq Acc Id: | XP_008760702 ⟸ XM_008762480 |
| - Peptide Label: | isoform X11 |
| - Sequence: |
MDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSEhide sequence |
| RefSeq Acc Id: | XP_017447104 ⟸ XM_017591615 |
| - Peptide Label: | isoform X16 |
| - Sequence: |
MSGSLAEEEIKTEQEVVEGMDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPhide sequence |
| RefSeq Acc Id: | XP_017447103 ⟸ XM_017591614 |
| - Peptide Label: | isoform X12 |
| - Sequence: |
MDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSELRHGhide sequence |
| RefSeq Acc Id: | XP_017447100 ⟸ XM_017591611 |
| - Peptide Label: | isoform X11 |
| - Sequence: |
MDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSEhide sequence |
| RefSeq Acc Id: | XP_017447101 ⟸ XM_017591612 |
| - Peptide Label: | isoform X12 |
| - Sequence: |
MDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSELRHGhide sequence |
| RefSeq Acc Id: | XP_017447099 ⟸ XM_017591610 |
| - Peptide Label: | isoform X11 |
| - Sequence: |
MDISTRSKDPKEDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSEhide sequence |
| RefSeq Acc Id: | XP_017447102 ⟸ XM_017591613 |
| - Peptide Label: | isoform X12 |
| - Sequence: |
MDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKKKKKPGLLNSSSKDQSELRHGhide sequence |
| RefSeq Acc Id: | XP_017447098 ⟸ XM_017591609 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MTARFSLAEEEIKTEQEVVEGMDISTRSKDPGSTERTAQKRKVPSPPHSSNGHSPQDSSTSPIKhide sequence |
| RefSeq Acc Id: | ENSRNOP00000074980 ⟸ ENSRNOT00000079324 |
| RefSeq Acc Id: | ENSRNOP00000061219 ⟸ ENSRNOT00000068328 |
Protein Domains
Bromo MYND-type PHD-type PWWP
TranscriptomePromoters| RGD ID: | 13692679 | ||||||||
| Promoter ID: | EPDNEW_R3204 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Zmynd8_1 | ||||||||
| Description: | zinc finger, MYND-type containing 8 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Alternative Promoters: | null; see alsoEPDNEW_R3205 | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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| RGD ID: | 13692681 | ||||||||
| Promoter ID: | EPDNEW_R3205 | ||||||||
| Type: | multiple initiation site | ||||||||
| Name: | Zmynd8_2 | ||||||||
| Description: | zinc finger, MYND-type containing 8 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Alternative Promoters: | null; see alsoEPDNEW_R3204 | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1309544 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000019154 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000061219 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOP00000074980 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000068328 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOT00000079324 | ENTREZGENE, UniProtKB/TrEMBL | |
| Gene3D-CATH | 1.20.920.10 | UniProtKB/TrEMBL |
| 3.30.40.10 | UniProtKB/TrEMBL | |
| IMAGE_CLONE | IMAGE:7108481 | IMAGE-MGC_LOAD |
| InterPro | Bromodomain | UniProtKB/TrEMBL |
| Bromodomain-like_sf | UniProtKB/TrEMBL | |
| DUF3544 | UniProtKB/TrEMBL | |
| PWWP | UniProtKB/TrEMBL | |
| RACK7_Bromo_dom | UniProtKB/TrEMBL | |
| Zinc_finger_PHD-type_CS | UniProtKB/TrEMBL | |
| ZMYND8/11_PWWP | UniProtKB/TrEMBL | |
| Znf_FYVE_PHD | UniProtKB/TrEMBL | |
| Znf_MYND | UniProtKB/TrEMBL | |
| Znf_PHD | UniProtKB/TrEMBL | |
| Znf_PHD-finger | UniProtKB/TrEMBL | |
| Znf_RING/FYVE/PHD | UniProtKB/TrEMBL | |
| KEGG Report | rno:296374 | UniProtKB/TrEMBL |
| MGC_CLONE | MGC:94817 | IMAGE-MGC_LOAD |
| NCBI Gene | 296374 | ENTREZGENE |
| Pfam | Bromodomain | UniProtKB/TrEMBL |
| DUF3544 | UniProtKB/TrEMBL | |
| PWWP | UniProtKB/TrEMBL | |
| PhenoGen | Zmynd8 | PhenoGen |
| PROSITE | BROMODOMAIN_2 | UniProtKB/TrEMBL |
| PWWP | UniProtKB/TrEMBL | |
| ZF_MYND_1 | UniProtKB/TrEMBL | |
| ZF_MYND_2 | UniProtKB/TrEMBL | |
| ZF_PHD_1 | UniProtKB/TrEMBL | |
| ZF_PHD_2 | UniProtKB/TrEMBL | |
| SMART | BROMO | UniProtKB/TrEMBL |
| PHD | UniProtKB/TrEMBL | |
| PWWP | UniProtKB/TrEMBL | |
| Superfamily-SCOP | Bromodomain | UniProtKB/TrEMBL |
| FYVE_PHD_ZnF | UniProtKB/TrEMBL | |
| UniGene | Rn.219272 | ENTREZGENE |
| Rn.23808 | ENTREZGENE | |
| UniProt | A0A0G2K9F7 | ENTREZGENE, UniProtKB/TrEMBL |
| A8C4G9 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2010-01-14 | Zmynd8 | zinc finger, MYND-type containing 8 | Prkcbp1 | protein kinase C binding protein 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2005-12-06 | Prkcbp1 | protein kinase C binding protein 1 | Prkcbp1_predicted | protein kinase C binding protein 1 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
| 2005-01-12 | Prkcbp1_predicted | protein kinase C binding protein 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
 |
| More on Zmynd8 | |
|
Alliance Gene |
|
NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1309544 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-08-20 |
| Status: | ACTIVE |
